|
|
29a2652bbf
|
Fixed installation on Ubuntu without pip
|
2020-06-04 15:06:35 +02:00 |
|
|
|
2a2c233936
|
obi import: fixed a bug when skipping an entry
v3.0.0b22
|
2020-05-29 21:19:42 +02:00 |
|
|
|
faf8ea9d86
|
Switch to version 3.0.0b21
v3.0.0b21
|
2020-05-28 20:42:09 +02:00 |
|
|
|
ffe2485e94
|
Genbank parser: now reading ORIGIN lines with comments without
triggering error
|
2020-05-28 20:41:34 +02:00 |
|
|
|
6094ce2bbc
|
obi import: skip on error more robust
|
2020-05-28 20:40:36 +02:00 |
|
|
|
a7dcf16c06
|
Minor changes for pip release
v3.0.0b20
|
2020-05-20 15:59:04 +02:00 |
|
|
|
f13f8f6165
|
obi import: minor doc/display improvements
|
2020-05-20 11:46:29 +02:00 |
|
|
|
b5a29ac413
|
Switch to version 3.0.0b19
v3.0.0b19
|
2020-05-20 10:29:36 +02:00 |
|
|
|
efd2b9d338
|
Cleaner installation
|
2020-05-20 10:29:12 +02:00 |
|
|
|
ca6e3e7aad
|
obi import: fixed to work with seq genbank extension
|
2020-05-20 10:28:14 +02:00 |
|
|
|
76ed8e18e5
|
Switch to version 3.0.0b18 with version formatting that fits setuptools
|
2020-05-18 17:08:55 +02:00 |
|
|
|
1d17f28aec
|
setup: now using setuptools instead of distutils to work with pip
|
2020-05-18 17:08:09 +02:00 |
|
|
|
fa834e4b8b
|
obi import: small bug fix
|
2020-05-18 17:06:58 +02:00 |
|
|
|
a72fea3cc9
|
Python: fasta parser: fixed a bug stopping the program when the last
line contained a single nucleotide
v3.0.0-beta17
|
2020-05-12 11:24:12 +02:00 |
|
|
|
e9a37d8a6e
|
Switch to version 3.0.0-beta16
v3.0.0-beta16
|
2020-05-07 17:09:26 +02:00 |
|
|
|
ef074f8455
|
typo
|
2020-05-07 17:08:59 +02:00 |
|
|
|
aec5e69f2c
|
C, views: no more automatic COUNT column if MERGED_sample column exists
|
2020-05-07 17:08:07 +02:00 |
|
|
|
170ef3f1ba
|
Views: added obi prefix to commands in bash history
|
2020-05-07 17:07:01 +02:00 |
|
|
|
f999946582
|
obi uniq: fixed the remerging of already merged informations, and
efficiency improvements
|
2020-05-07 17:05:54 +02:00 |
|
|
|
773b36ec37
|
obi import: fixed the import of old obitools files with premerged
informations, and other minor improvements
|
2020-05-07 17:03:04 +02:00 |
|
|
|
69cb434a6c
|
version 3.0.0-beta15c
|
2020-04-29 14:25:33 +02:00 |
|
|
|
55d4f98d60
|
obi annotate: fixed annotation at ranks
|
2020-04-29 14:24:40 +02:00 |
|
|
|
0bec2631e8
|
ecotag: fixed a bug where all the full DMS path weren't properly sent to
the C layer
|
2020-04-29 10:35:55 +02:00 |
|
|
|
e6b6c6fa84
|
AVLs: Made an error message more informative
|
2020-04-29 10:14:04 +02:00 |
|
|
|
974528b2e6
|
build_ref_db: fixed bug erasing some of the higher LCAs (i.e. lowest
similarities)
v3.0.0-beta15
|
2020-04-28 15:56:06 +02:00 |
|
|
|
1b346b54f9
|
ecotag: better specificity by now correctly looking for similarities
within refs above best score instead of ecotag threshold
|
2020-04-28 15:10:07 +02:00 |
|
|
|
058f2ad8b3
|
ecopcr: fixed a bug where sequences were considered circular (generating
false positives)
|
2020-04-27 14:44:35 +02:00 |
|
|
|
60bfd3ae8d
|
obi annotate: now defaults to setting str if expression is not valid
|
2020-04-24 11:35:20 +02:00 |
|
|
|
67bdee105a
|
C: build_ref_db: added progress display for each step
|
2020-04-18 14:24:08 +02:00 |
|
|
|
0f745e0113
|
C: Columns: optimizing column file growth
|
2020-04-18 13:55:47 +02:00 |
|
|
|
da8de52ba4
|
export: fixed progress bar bug
|
2020-04-17 15:09:10 +02:00 |
|
|
|
4d36538c6e
|
C: SSE lcs alignment: band-aid for memory bug I don't understand
(triggered on specific db on ubuntu)
|
2020-04-17 15:07:52 +02:00 |
|
|
|
8d0b17d87d
|
Switch to version 3.0.0-beta14
v3.0.0-beta14
|
2020-04-15 17:47:26 +02:00 |
|
|
|
343999a627
|
Taxonomy: fixed a critical memory bug when building the list of merged
taxids
|
2020-04-15 17:46:13 +02:00 |
|
|
|
e9a40630e9
|
C: Columns: rounding column growth to ceil to avoid looping on small
values
|
2020-04-13 19:02:10 +02:00 |
|
|
|
8dbcd3025a
|
C: Columns: reduced column growth factor from 2 to 1.3 to avoid errno28
|
2020-04-13 14:47:56 +02:00 |
|
|
|
4cf635d001
|
Switch to version 3.0.0-beta13
v3.0.0-beta13
|
2020-04-12 17:42:58 +02:00 |
|
|
|
b7e7cc232a
|
Made completion script cleaner
|
2020-04-12 17:41:59 +02:00 |
|
|
|
b6ab792ceb
|
C: made error message more detailed when checking that sequences and
qualities match
|
2020-04-12 17:40:24 +02:00 |
|
|
|
ddea5a2964
|
obi import: fixed inconsequential error when precomputing number of
entries in some formats
|
2020-04-12 17:38:42 +02:00 |
|
|
|
30852ab7d5
|
View bash history: removed useless shebang
|
2020-04-12 17:36:04 +02:00 |
|
|
|
4d0299904e
|
all commands (almost): cleaner DMS closing at the end
|
2020-04-12 17:31:58 +02:00 |
|
|
|
eef5156d95
|
obi stats: fixed error when printing bool keys
|
2020-04-12 17:12:04 +02:00 |
|
|
|
e62c991bbc
|
goes with previous commit
|
2020-04-10 11:22:26 +02:00 |
|
|
|
1218eed7fd
|
ecopcr: now printing a warning instead of interrupting with an error
when a taxid is not found
|
2020-04-10 11:22:04 +02:00 |
|
|
|
cd9cea8c97
|
obi import: fixed critical bug where the last entry of embl and genbank
files was not imported
|
2020-04-09 19:26:27 +02:00 |
|
|
|
98cfb70d73
|
ecopcr: made some errors more informative
|
2020-04-09 09:15:28 +02:00 |
|
|
|
b9f68c76c8
|
ecopcr: added warnings and check of primer length (related to #75)
|
2020-04-05 18:40:56 +02:00 |
|
|
|
0b98371688
|
ngsfilter: added warning about primer length in -h (#75)
|
2020-04-05 18:39:20 +02:00 |
|
|
|
f0d152fcbd
|
ngsfilter: now checking primer length (fixes #75)
|
2020-04-05 18:29:10 +02:00 |
|
