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Fixed gcc warnings

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This commit is contained in:
Celine Mercier
2019-09-25 11:38:00 +02:00
parent c3b9e46291
commit 44517db51f
11 changed files with 49 additions and 69 deletions
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20
src/libecoPCR/libthermo/nnparams.c
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@@ -479,7 +479,7 @@ int nparam_CountGCContent(char * seq ) {
return count;
}
void nparam_CleanSeq (char* inseq, char* outseq, int len)
void nparam_CleanSeq (const char* inseq, char* outseq, int len)
{
int seqlen = strlen (inseq);
int i, j;
@@ -525,10 +525,10 @@ double nparam_CalcSelfTM(PNNParams nparm, char* seq, int len)
//double thedS = nparam_GetInitialEntropy(nparm);
double thedS = -5.9f+nparm->rlogc;
double mtemp;
char c1;
char c2;
char c3;
char c4;
unsigned char c1;
unsigned char c2;
unsigned char c3;
unsigned char c4;
unsigned int i;
char nseq[50];
char *useq = seq;
@@ -556,7 +556,7 @@ double nparam_CalcSelfTM(PNNParams nparm, char* seq, int len)
return mtemp;
}
double nparam_CalcTwoTM(PNNParams nparm, char* seq1, char* seq2, int len)
double nparam_CalcTwoTM(PNNParams nparm, const char* seq1, const char* seq2, int len)
{
const unsigned long long minus1 = 0xFFFFFFFFFFFFFFFFLLU;
const double NaN = *((double*)&minus1);
@@ -564,10 +564,10 @@ double nparam_CalcTwoTM(PNNParams nparm, char* seq1, char* seq2, int len)
//double thedS = nparam_GetInitialEntropy(nparm);
double thedS = -5.9f+nparm->rlogc;
double mtemp;
char c1;
char c2;
char c3;
char c4;
unsigned char c1;
unsigned char c2;
unsigned char c3;
unsigned char c4;
unsigned int i;
char nseq1[50];
char nseq2[50];

2
src/libecoPCR/libthermo/nnparams.h
View File

@@ -53,7 +53,7 @@ double nparam_GetEntropy(PNNParams nparm, char x0, char x1, char y0, char y1);
double nparam_GetEnthalpy(PNNParams nparm, char x0, char x1, char y0, char y1);
double nparam_CalcTM(double entropy,double enthalpy);
double nparam_CalcSelfTM(PNNParams nparm, char* seq, int len);
double nparam_CalcTwoTM(PNNParams nparm, char* seq1, char* seq2, int len);
double nparam_CalcTwoTM(PNNParams nparm, const char* seq1, const char* seq2, int len);
double nparam_GetInitialEntropy(PNNParams nparm) ;
double calculateMeltingTemperatureBasic (char * seq);