obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity
1,199 Commits 18 Branches 66 Tags
master
Commit Graph

39 Commits

Author SHA1 Message Date
MercierC
7f0f63cf26 C: now completely unmapping files before truncating them to a smaller 
size (#68)
 2021-03-11 15:12:40 +13:00
Celine Mercier
a3ebe5f118 C: AVL trees: fixed a bug where storing the difference between 2 crc64 
values in an int64 would mess trees up resulting in failed data
dereplication
 2020-07-07 16:47:00 +02:00
Celine Mercier
e6b6c6fa84 AVLs: Made an error message more informative 2020-04-29 10:14:04 +02:00
Celine Mercier
e43e49d6f1 C: optimized dir opening 2019-08-29 16:35:10 +02:00
Celine Mercier
7fc1b578cf AVLs: AVLs in a group are not unmapped and remapped constantly anymore 
when adding new values, fixed a bug when calculating if an AVL data file
has reached the maximum size, fixed a casting bug, and added a boolean
so read-only AVLs files are not truncated
 2018-11-19 11:19:07 +01:00
Celine Mercier
e18b762d81 Weird buggy Eclipse commit with nothing changed 2018-10-21 17:35:18 +02:00
Celine Mercier
8ce6dd6d1a Updated prototypes with no arguments with a void argument as suggested 
by compilation warnings
 2018-10-17 12:00:40 +02:00
Celine Mercier
38029b1f77 Forgot a ; 2017-08-20 17:56:18 +02:00
Celine Mercier
6afdc9fb5f AVLs: Added an error check 2017-08-20 17:21:06 +02:00
Celine Mercier
344566d9e9 AVLs: made some functions public and changed some rights to be able to 
import AVLs from a DMS to another
 2017-08-03 16:27:43 +02:00
Celine Mercier
de189fd7e0 Fixed major bug when cloning an AVL where the bloom filter was not 
copied properly (because the sutructure copy via assignation does not
work for structures with a variable size)
 2016-09-15 11:47:02 +02:00
Celine Mercier
c9dce03295 Fixed major bug when cloning an AVL group (last AVL of new group was not 
correctly enlarged before copying the data) + minor improvements
 2016-09-05 12:29:52 +02:00
Celine Mercier
fc3641d7ff Read-only AVLs are now hard-linked instead of copied when cloning an AVL 
group to make it writable. Also fixed several bugs when handling AVL
groups.
 2016-06-03 19:02:46 +02:00
Celine Mercier
ffff91e76c Fixed variable name that had been accidentally changed for better 
clarity
 2016-05-18 13:27:41 +02:00
Celine Mercier
6a8df069ad Indexers are now cloned if needed to modify them after they've been 
closed. Obligatory indexers' names now follow the same pattern as other
indexers (columnname_version). Closes #46 and #49.
 2016-05-18 13:23:48 +02:00
Celine Mercier
31cf27d676 Added indexer function that returns the name of the indexer 2016-04-29 16:18:56 +02:00
Celine Mercier
4ead37ee48 Finished moving obiblob functions to obiblob files and documentation for 
obiblob functions
 2016-04-21 15:18:14 +02:00
Celine Mercier
043e70ff49 Updated AVL documentation 2016-04-21 14:39:03 +02:00
Celine Mercier
66021367f6 Moved some blob functions to obiblob.c 2016-04-21 14:20:26 +02:00
Celine Mercier
02d67c257f The default name of an AVL is now the column name + '_indexer', and when 
an AVL is opened (as opposed to created), it is read-only
 2016-04-15 12:55:26 +02:00
Celine Mercier
527d3555f0 Moved the functions getting full paths for files and directories to 
obidms.c/.h files
 2016-04-15 11:11:13 +02:00
Celine Mercier
71492ad229 Made the handling of listing and unlisting opened columns and indexers 
functions in the obidms files.
 2016-04-15 10:49:12 +02:00
Celine Mercier
d8107533d8 Obiblob_indexer API 2016-04-12 14:53:33 +02:00
Celine Mercier
375bfcce8a Renamed "Obi_byte_arrays" to "Obiblobs" and moved Obiblob functions to 
separate obiblob.c and obiblob.h files
 2016-04-12 11:21:14 +02:00
Celine Mercier
c225cfd8b6 Fixed bug with retrieval of values from AVLs (bad cast in byte array 
structure)
 2016-04-11 17:07:22 +02:00
Celine Mercier
019dfc01b4 Branch to refactor and debug (AVLs bugged) 2016-04-08 15:38:57 +02:00
Celine Mercier
ff6c27acf2 Implemented the retrieval of values with groups of AVLs 2016-03-25 15:35:16 +01:00
Celine Mercier
69856f18dd untested (and no possible retrieval) of CRC used to represent data in 
AVL trees
 2016-03-24 16:38:11 +01:00
Celine Mercier
58ac860cc7 Added macro for the bloom filter parameters and deleted old unused 
macros for crc
 2016-03-23 13:33:40 +01:00
Celine Mercier
6bd42132c4 Minor fixes to silence warnings and replaced two asprintf uses 2016-03-23 12:58:53 +01:00
Celine Mercier
4085904362 Merge branch 'multiple_avls_bloom' 2016-03-22 14:14:10 +01:00
Celine Mercier
b04b4b5902 made POSIX compliant 2016-03-21 11:33:06 +01:00
Celine Mercier
3681cecb4d Multiple AVLs with bloom filters (very raw test version) 2016-03-18 11:06:02 +01:00
Celine Mercier
545ed8111a Code for tests storing data in multiple AVLs. 
(note: unretrievable data as implemented)
 2016-03-11 15:34:55 +01:00
Celine Mercier
86071d30c9 Minor improvement in AVL initial size calculation 2016-03-11 14:07:40 +01:00
Celine Mercier
8e9e21a02e Increased the maximum depth of AVL trees 2016-02-29 16:27:23 +01:00
Celine Mercier
cfaf069095 Fixed more typos and formatting imperfections. 2015-12-11 17:37:25 +01:00
Celine Mercier
a6144eabe2 Fixed typos 2015-12-11 17:26:20 +01:00
Celine Mercier
c139367555 DNA sequences and character strings are now handled using AVL trees. 2015-12-11 17:24:44 +01:00