 Celine Mercier
|
5c3bc03bd2
|
Added the handling of errors with the functions to get a value in a
column
|
2015-09-14 17:04:29 +02:00 |
|
|
Celine Mercier
|
f2231770f1
|
If an error occurs when cloning a column, the new cloned file is now
deleted
|
2015-09-02 13:06:21 +02:00 |
|
|
Celine Mercier
|
52e3f2ce4a
|
Columns that are cloned are now closed after cloning
|
2015-09-02 10:36:00 +02:00 |
|
|
Celine Mercier
|
f0dffaff13
|
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
|
2015-09-02 10:15:18 +02:00 |
|
|
Celine Mercier
|
f31d8983bb
|
Columns are now enlarged if needed when setting a value
|
2015-09-01 17:38:08 +02:00 |
|
|
Celine Mercier
|
3b7536c0df
|
The number of lines used is updated in the header when a value is set,
and the iteration on the values of a column is done on the number of
lines used (instead of on the total line count).
|
2015-08-26 17:25:15 +02:00 |
|
|
Celine Mercier
|
34ade161de
|
added an obidebug() line
|
2015-08-26 17:05:37 +02:00 |
|
|
Celine Mercier
|
48d10ea17c
|
Functions to truncate and/or close a column
|
2015-08-26 17:01:54 +02:00 |
|
|
Celine Mercier
|
fdc3b96beb
|
Added cython subclasses for columns with _writable or _read for each
data type. Trying to set a value on a _read subclass raises an
exception.
|
2015-08-26 15:34:12 +02:00 |
|
|
Celine Mercier
|
95dbeb25a0
|
Added functions to get and set values in columns using the element name
(for columns with lines made of vectors of elements), for all data types
|
2015-08-26 15:05:23 +02:00 |
|
|
Celine Mercier
|
9d91e907e5
|
When a column is created, its data is initialized to the NA value of the
obitype
|
2015-08-26 12:00:38 +02:00 |
|
|
Celine Mercier
|
3f81dc0173
|
Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
|
2015-08-26 10:52:19 +02:00 |
|
|
Celine Mercier
|
8ff3488926
|
Fix: The number of lines used is set when cloning a column with its data
|
2015-08-26 10:38:07 +02:00 |
|
|
Celine Mercier
|
611699252e
|
Files and functions for columns with the data type OBIChar_t, working
but using char* (needs to be changed)
|
2015-08-26 10:31:56 +02:00 |
|
|
Celine Mercier
|
9ad31fddff
|
Added the possibility to clone a column, with or without its data
|
2015-08-26 10:29:07 +02:00 |
|
|
Celine Mercier
|
2162bf4272
|
obidebug.h for debugging tools
|
2015-06-26 17:56:15 +02:00 |
|
|
Celine Mercier
|
c454f9612e
|
changed 'column groups' to be called 'column directories' for now.
|
2015-06-26 17:53:03 +02:00 |
|
|
Celine Mercier
|
71cd59f775
|
close file descriptors that don't refer to a directory (as those can not
be reopened)
|
2015-06-24 13:53:12 +02:00 |
|
|
Celine Mercier
|
719ef61461
|
changed file names
|
2015-06-23 18:36:20 +02:00 |
|
|
Celine Mercier
|
152b34b5f4
|
Closes #10 : column groups stored in directories
|
2015-06-23 18:35:34 +02:00 |
|
|
Celine Mercier
|
61b6c3ce83
|
Added OBI errnos but work in progress
|
2015-06-23 17:56:21 +02:00 |
|
|
Celine Mercier
|
0a78a786c1
|
fixed replacement *at functions and made get_full_path() function public
|
2015-06-23 17:55:00 +02:00 |
|
|
Celine Mercier
|
e6e68786f7
|
private *at functions (openat, mkdirat, opendirat, closedirat)
|
2015-06-18 17:19:23 +02:00 |
|
|
Celine Mercier
|
58e7066b9f
|
updated and fixed the documentation
|
2015-06-17 17:17:54 +02:00 |
|
|
Celine Mercier
|
ed662077b3
|
fixed bugs and typos in the obidms and obidmscolumn source and header
files
|
2015-06-17 16:51:16 +02:00 |
|
|
Celine Mercier
|
9f9c20aa4a
|
new OBIDMS_column cython class
|
2015-06-17 16:49:49 +02:00 |
|
|
Celine Mercier
|
73ba9fd4c3
|
updated the OBIDMS class
|
2015-06-17 16:48:56 +02:00 |
|
|
Celine Mercier
|
771be89103
|
updated the documentation (replaced 'release files' with 'version
files')
|
2015-06-17 16:45:04 +02:00 |
|
|
Celine Mercier
|
f740557d96
|
fixes #9 : replacement function for openat().
|
2015-06-17 14:55:05 +02:00 |
|
|
Celine Mercier
|
aff74c72dd
|
updated the documentation
|
2015-06-10 15:41:14 +02:00 |
|
|
Celine Mercier
|
5d967f5b7b
|
fixed typos and other minor things
|
2015-06-10 15:19:02 +02:00 |
|
|
Celine Mercier
|
9b6de9c411
|
Attempt at defining some naming conventions.
|
2015-05-28 17:54:11 +02:00 |
|
|
Celine Mercier
|
27e246e709
|
updated the documentation
|
2015-05-28 17:03:50 +02:00 |
|
|
Celine Mercier
|
ff64d1b2e9
|
deleting a useless file
|
2015-05-28 16:35:43 +02:00 |
|
|
Celine Mercier
|
235a81a534
|
deleting test data file
|
2015-05-28 16:35:03 +02:00 |
|
|
Celine Mercier
|
4759e1cf54
|
deleting the Breathe sources
|
2015-05-28 16:34:24 +02:00 |
|
|
Celine Mercier
|
f4a123cd17
|
updated the documentation with the special values, and the idea of
column directories and column group directories.
|
2015-05-28 16:33:45 +02:00 |
|
|
Celine Mercier
|
0b031da28c
|
A very basic obicount
|
2015-05-22 17:54:34 +02:00 |
|
|
Celine Mercier
|
2073f9f307
|
OBIDMSColumn file for testing
|
2015-05-22 17:53:42 +02:00 |
|
|
Celine Mercier
|
f60a98a21d
|
Updated the documentation
|
2015-05-22 17:52:55 +02:00 |
|
|
Celine Mercier
|
2395688bd3
|
adding Doxygen doc generation to the Sphinx Makefile
|
2015-05-21 11:05:43 +02:00 |
|
|
Celine Mercier
|
1d39dcc559
|
updated documentation
|
2015-05-18 17:57:10 +02:00 |
|
|
Celine Mercier
|
196140af35
|
included the doc from both header files in the documentation
|
2015-05-13 11:16:50 +02:00 |
|
|
Celine Mercier
|
5990da3215
|
first header files for OBIColumns.
|
2015-05-13 11:06:52 +02:00 |
|
|
Celine Mercier
|
6e1b92db8f
|
Updated the doc with the idea of OBIDMS release files.
|
2015-05-12 16:41:12 +02:00 |
|
|
Celine Mercier
|
3662613551
|
Closes #4. Updated the doc with new naming conventions for OBIDMS column
files.
|
2015-05-12 15:17:28 +02:00 |
|
|
Celine Mercier
|
d922cceb59
|
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
|
2015-05-12 14:29:39 +02:00 |
|
|
Celine Mercier
|
db8b54aad6
|
fixed "ULM" mistake : replaced with "UML"
|
2015-05-12 14:25:52 +02:00 |
|
|
Celine Mercier
|
aece3281a0
|
adding Doxyfile
|
2015-05-12 11:27:08 +02:00 |
|
|
Celine Mercier
|
6dd6567231
|
documentation for the OBIDMS ULM
|
2015-05-11 17:45:47 +02:00 |
|
|
Celine Mercier
|
c99677a6b6
|
adding the doxygen directories
|
2015-05-11 17:27:03 +02:00 |
|
|
Celine Mercier
|
e1aa835463
|
fixed conf.py to put relative paths
|
2015-05-11 17:23:43 +02:00 |
|
|
Celine Mercier
|
476f30659d
|
new version of the documentation with a part generated using doxygen and
breathe
|
2015-05-11 17:20:59 +02:00 |
|
|
Celine Mercier
|
428431932f
|
configuring the sphinx conf.py file for breathe
|
2015-05-11 17:19:41 +02:00 |
|
|
Celine Mercier
|
66296e1c06
|
adding the breathe files
|
2015-05-11 17:18:23 +02:00 |
|
|
Celine Mercier
|
7e74b40b0a
|
adding header file for the OBIIntColumn structure
|
2015-05-11 17:14:05 +02:00 |
|
|
Celine Mercier
|
7c3c112eff
|
first commit
|
2015-05-07 16:10:03 +02:00 |
|