Celine Mercier
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8e92bf6dac
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LCS alignment: it is now checked that sequences are not longer than what
a 16 bits integer can code for (as the LCS and alignment lengths are
kept in 16 bits registers)
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2016-12-22 17:06:23 +01:00 |
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Celine Mercier
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30e4359c85
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LCS alignment: documentation for all the lowest level functions
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2016-12-22 17:03:51 +01:00 |
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Celine Mercier
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8afb1644e9
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Alignment: API rework. 'obi align' is now 'obi lcs', and the results are
now written to columns automatically created in the output view, all
optimally handled at the C level.
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2016-12-12 11:58:59 +01:00 |
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Celine Mercier
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70c49e214a
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Added the kmer filter to LCS alignments, and now obiblobs containing
encoded sequences are directly put in int16_t arrays for the alignment
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2016-11-18 16:29:28 +01:00 |
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Celine Mercier
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b3c47809da
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First version of alignment functions (imported from suma* programs)
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2016-05-11 16:36:23 +02:00 |
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