Celine Mercier
|
e8417b4f6f
|
The endianness of an OBIDMS is now stored in an informations file that
is read when opening the OBIDMS.
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2015-11-16 14:37:51 +01:00 |
|
Celine Mercier
|
6579566c6e
|
Minor changes in code to improve readability and fix C compilation
warnings
|
2015-11-10 14:37:58 +01:00 |
|
Celine Mercier
|
410e2e02a0
|
When retrieving the header of a column, the version number of the column
wanted can now be provided.
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2015-11-10 13:30:10 +01:00 |
|
Celine Mercier
|
661fe3606a
|
In OBI_CHAR columns, characters are now given and retrieved as decoded
(unicode) characters.
|
2015-11-10 11:24:08 +01:00 |
|
Celine Mercier
|
c4b7e579cf
|
Comments in column headers are now working.
|
2015-11-10 10:56:45 +01:00 |
|
Celine Mercier
|
0e3d6ed2d7
|
Methods __len__ (number of lines used) and __sizeof__ (total size in
bytes) implemented for columns.
|
2015-11-09 15:56:20 +01:00 |
|
Celine Mercier
|
9b066f4327
|
Major update: obiarrays with columns containing indices referring to
character strings.
|
2015-11-06 17:55:15 +01:00 |
|
Celine Mercier
|
456551ffeb
|
obi arrays that don't work because of cython bug passing wrong pointers
|
2015-11-03 14:22:00 +01:00 |
|
Celine Mercier
|
ecb9d97adb
|
Reorganized the code to have less functions, and the functions to get
and format the creation date of a column are now working.
|
2015-10-15 15:12:45 +02:00 |
|
Celine Mercier
|
0eaa5aa784
|
Major changes : new cython subclasses to handle columns with multiple
elements per line in a more efficient way + now elements_names are
passed as a list + new function to recover only the header of a column
|
2015-10-14 18:05:34 +02:00 |
|
Celine Mercier
|
21923e213d
|
The unit tests now test for None values
|
2015-10-12 18:02:40 +02:00 |
|
Celine Mercier
|
dbed3d9d1d
|
New module for unit testing with PyUnit
|
2015-10-09 15:42:57 +02:00 |
|
Celine Mercier
|
ebc9f6f512
|
fixed a bug where Cython was casting doubles in floats
|
2015-10-08 15:28:30 +02:00 |
|
Celine Mercier
|
2b3f03ec28
|
Removed deprecated script
|
2015-10-08 10:46:46 +02:00 |
|
Celine Mercier
|
b553eef781
|
Method to close a DMS is uncommented but not complete yet (columns have
to be closed separately)
|
2015-10-08 10:44:13 +02:00 |
|
Celine Mercier
|
392f110c8d
|
new functions in the OBIDMS_column class to raise NotImplementedError
exceptions and to get the creation date of a column
|
2015-10-02 13:51:26 +02:00 |
|
Celine Mercier
|
eeebbc77c3
|
missing __init__ file in previous commit
|
2015-09-28 13:52:13 +02:00 |
|
Celine Mercier
|
72155c3b73
|
entirely reworked cython wrapper
|
2015-09-28 13:51:35 +02:00 |
|
Celine Mercier
|
9aaf2d264a
|
test
|
2015-09-25 11:29:17 +02:00 |
|
Celine Mercier
|
0951934f77
|
test
|
2015-09-25 11:28:23 +02:00 |
|
Celine Mercier
|
68b6ab3224
|
working on the cython wrapper. This doesn't compile
|
2015-09-24 11:32:09 +02:00 |
|
Celine Mercier
|
7d7dbb1bf9
|
Handling of single char columns
|
2015-09-18 15:49:15 +02:00 |
|
Celine Mercier
|
34a3717fb9
|
The cython function to open a column is now a method of the OBIDMS class
|
2015-09-17 11:23:50 +02:00 |
|
Celine Mercier
|
2698022aaf
|
New OBIDMS method to list the columns of an OBIDMS
|
2015-09-15 17:09:31 +02:00 |
|
Celine Mercier
|
90bf15186e
|
Method to get a column's number of lines used
|
2015-09-14 17:33:40 +02:00 |
|
Celine Mercier
|
5c3bc03bd2
|
Added the handling of errors with the functions to get a value in a
column
|
2015-09-14 17:04:29 +02:00 |
|
|
|
0e50fbf706
|
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
|
2015-09-03 08:38:57 -04:00 |
|
|
|
f5937ec019
|
Deplacement des sources de la doc...
|
2015-09-02 04:50:50 -04:00 |
|
Celine Mercier
|
f31d8983bb
|
Columns are now enlarged if needed when setting a value
|
2015-09-01 17:38:08 +02:00 |
|
Celine Mercier
|
3b7536c0df
|
The number of lines used is updated in the header when a value is set,
and the iteration on the values of a column is done on the number of
lines used (instead of on the total line count).
|
2015-08-26 17:25:15 +02:00 |
|
Celine Mercier
|
48d10ea17c
|
Functions to truncate and/or close a column
|
2015-08-26 17:01:54 +02:00 |
|
Celine Mercier
|
fdc3b96beb
|
Added cython subclasses for columns with _writable or _read for each
data type. Trying to set a value on a _read subclass raises an
exception.
|
2015-08-26 15:34:12 +02:00 |
|
Celine Mercier
|
95dbeb25a0
|
Added functions to get and set values in columns using the element name
(for columns with lines made of vectors of elements), for all data types
|
2015-08-26 15:05:23 +02:00 |
|
Celine Mercier
|
3f81dc0173
|
Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
|
2015-08-26 10:52:19 +02:00 |
|
Celine Mercier
|
611699252e
|
Files and functions for columns with the data type OBIChar_t, working
but using char* (needs to be changed)
|
2015-08-26 10:31:56 +02:00 |
|
Celine Mercier
|
9ad31fddff
|
Added the possibility to clone a column, with or without its data
|
2015-08-26 10:29:07 +02:00 |
|
celinemercier
|
eaca9c85f1
|
Files and functions for OBIDMS columns with the data type OBI_BOOL
|
2015-08-11 11:00:59 +02:00 |
|
celinemercier
|
bc2ca89088
|
Basis for OBIDMS columns with the type OBI_IDX
|
2015-08-10 16:30:55 +02:00 |
|
celinemercier
|
a5ed8f0ef0
|
A basic obicount for testing purposes
|
2015-08-10 16:06:05 +02:00 |
|
celinemercier
|
d53c16cf3e
|
Functions and files for OBIDMS columns with the type OBI_FLOAT
|
2015-08-10 16:04:53 +02:00 |
|
celinemercier
|
66f397239b
|
Commented __del__ functions for now, as they contain closedir() that can
create problems
|
2015-08-03 16:15:26 +02:00 |
|
celinemercier
|
1e01c9059c
|
functions to get data type as a character string
|
2015-08-03 11:46:21 +02:00 |
|
celinemercier
|
a6abc74500
|
Cython sources modified to add the handling of OBIDMS columns with the
type OBI_INT
|
2015-07-31 18:02:40 +02:00 |
|
celinemercier
|
5c674715ee
|
added the idea of each line of a column corresponding to a vector, with
the added informations of the number of elements per line and the
elements' names in the column's header structure
|
2015-07-20 16:08:50 +02:00 |
|
celinemercier
|
802f9983c2
|
fixing file names in list of C files after changing 'column groups' to
'column directories'
|
2015-07-20 11:13:56 +02:00 |
|
Celine Mercier
|
152b34b5f4
|
Closes #10 : column groups stored in directories
|
2015-06-23 18:35:34 +02:00 |
|
Celine Mercier
|
9f9c20aa4a
|
new OBIDMS_column cython class
|
2015-06-17 16:49:49 +02:00 |
|
Celine Mercier
|
73ba9fd4c3
|
updated the OBIDMS class
|
2015-06-17 16:48:56 +02:00 |
|
|
|
32fd7b5a6b
|
rename falsly named files *.pyx in *.pxd ;-)
|
2015-05-27 15:05:14 +02:00 |
|
|
|
9f69f76704
|
Few change on the obidms package
|
2015-05-26 14:17:08 +02:00 |
|
