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• v3.0.0b28 24a737aa55

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  v3.0.0b28 Stable

  coissac released this 2020-07-24 14:14:40 +00:00 | 132 commits to master since this release

  • all commands: now handle output to buffer object (e.g. stdout)
  • ngsfilter: unidentified sequences are now kept untrimmed
  • alignpairedend: improved/fixed the output tags for the alignment score and lengths
  • grep: now prints the number of entries grepped

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• v3.0.0b27 9ace9989c4

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  v3.0.0b27 Stable

  coissac released this 2020-07-07 14:51:02 +00:00 | 139 commits to master since this release

  • uniq: Fixed a bug where some sequences were not properly dereplicated
  • clean: Fixed the behaviour when no or bad sample information is given

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• v3.0.0b26 ade1107b42

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  v3.0.0b26 Stable

  coissac released this 2020-06-17 17:00:55 +00:00 | 144 commits to master since this release

  • export: dictionaries are now formatted as they were in the original OBITools, and fixed tuple formatting

  • ngsfilter: reversed tag is now set to 'False' instead of 'None' when false.

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• v3.0.0b25 aa01236cae

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  v3.0.0b25 Stable

  coissac released this 2020-06-13 19:52:15 +00:00 | 149 commits to master since this release

  • ngsfilter: made one of the tag error messages more accurate
  • grep and uniq now output empty views when the input is an empty view
  • ls: fixed an issue with big DMS

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• v3.0.0b24 e4a32788c2

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  v3.0.0b24 Stable

  coissac released this 2020-06-09 12:41:59 +00:00 | 156 commits to master since this release

  • Improved ecotag output with list of taxids of best matches
  • Improved uniq progress bar
  • Fixed bash history display for views
  • Fixed bugs with the output of sequences unaligned ('joined') by alignpairedend
  • Fixed a bug where tuple columns would 'lose' their indexer in some cases

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• v3.0.0b23 359a9fe237

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  v3.0.0b23 Stable

  coissac released this 2020-06-04 13:37:47 +00:00 | 164 commits to master since this release

  Fixed installation on Ubuntu without pip.

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• v3.0.0b22 2a2c233936

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  v3.0.0b22 Stable

  coissac released this 2020-05-29 19:26:58 +00:00 | 167 commits to master since this release

  Fixed a bug when skipping unreadable sequences in obi import

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• v3.0.0b21 faf8ea9d86

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  v3.0.0b21 Stable

  coissac released this 2020-05-28 18:43:38 +00:00 | 168 commits to master since this release

  Improved import of Genbank files

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• v3.0.0b20 a7dcf16c06

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  v3.0.0b20 Stable

  coissac released this 2020-05-20 14:06:01 +00:00 | 171 commits to master since this release

  Reworked installation for pip + minor fixes

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• v3.0.0b19 b5a29ac413

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  v3.0.0b19 Stable

  coissac released this 2020-05-20 08:36:36 +00:00 | 173 commits to master since this release

  Reworked the installation to work with pip, and made obi import work with seq genbank extension.

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