PhyloSkims/annotate
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Change awk to $AwkCmd

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Signed-off-by: Eric Coissac <eric.coissac@metabarcoding.org>
Former-commit-id: 79d7c6cc4333c8f72cef71f9c5323c151bb0e6b7
Former-commit-id: 869cf28bb894c95297fc0f80e424a55d347f2a65
This commit is contained in:
Eric Coissac
2016-10-09 01:25:57 -03:00
parent a4147f27e2
commit 54413e7420
1 changed files with 1 additions and 1 deletions
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detectors/cds/bin/do_exonerate.csh
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@ -185,7 +185,7 @@ $AwkCmd -v MAX_SPAN=$PASS1_MAX_SPAN \
# get annotations
#
egrep "^$ProtName " $ProtDir/Annot.lst | awk '{print "c annot", $0}' > T_$$
egrep "^$ProtName " $ProtDir/Annot.lst | $AwkCmd '{print "c annot", $0}' > T_$$
#
# extend start/stop