PhyloSkims/annotate
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new script for sumarizing features for easiest compairison

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Former-commit-id: 348556d9cd376fc017b6b67859e6268083c942d9
Former-commit-id: 034f32f7b2caec70e604c50dd90786a3df0942e0
This commit is contained in:
Eric Coissac
2022-02-17 18:42:55 +01:00
parent 0f6b447c5c
commit d75cb117d3
1 changed files with 12 additions and 0 deletions
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summarize_annot.sh Executable file
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#!/bin/bash
egrep "^FT (CDS|rRNA|tRNA) |/gene=" $1 \
| awk '
/\/gene=/ && (gene!=1) {
print $0;
gene=1
}
/^FT (CDS|rRNA|tRNA)/ {
print $0;
gene=0
}'