Commit Graph

39 Commits

Author SHA1 Message Date
dcee664315 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@42 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-06 10:12:30 +00:00
cd4ea3fb32 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@41 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-06 10:12:18 +00:00
a827cc0cfe git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@40 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 14:27:28 +00:00
065f4fe0c6 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@39 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 14:10:06 +00:00
2a433afba2 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@38 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 14:00:14 +00:00
45f27e8c87 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@37 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 13:40:06 +00:00
d36821796f git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@36 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 13:39:23 +00:00
f2d3a6c5f6 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@35 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 13:39:08 +00:00
8b455b0954 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@34 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 13:38:33 +00:00
38030f2298 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@33 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 13:38:21 +00:00
1a768aa97e git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@32 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-05 13:37:41 +00:00
65e22a235d git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@31 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:51:49 +00:00
1673e76781 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@30 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:34:47 +00:00
0cbe831e0e git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@29 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:34:31 +00:00
adca6d14d9 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@28 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:34:14 +00:00
7d9ab96dc1 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@27 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:34:00 +00:00
5094a9a9ce git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@26 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:33:49 +00:00
4fd532e05c git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@25 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:33:30 +00:00
bcfa42d009 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@24 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-04 15:33:22 +00:00
64c1bf5151 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@23 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-01 15:08:42 +00:00
f64bb16909 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@22 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-01 15:08:15 +00:00
736a5b384f git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@21 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-01 15:07:24 +00:00
079d097fb2 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@20 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-01 14:33:04 +00:00
f4cce78d05 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@19 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-01 14:32:21 +00:00
22216dc3a0 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@18 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-06-01 14:16:06 +00:00
4b40069c51 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@17 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-05-28 09:09:47 +00:00
c81a591889 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@16 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-05-25 15:56:13 +00:00
33984922bd new makefile file
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@15 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-05-25 14:47:28 +00:00
e599fc29a0 Nouvelle branche ouverte pour que julien fasse le menage
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@14 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-05-25 14:43:12 +00:00
6cd1141130 Add capacity to format fasta files, with taxonomical data described in title line in the following format :
[taxon: ####] where #### is a taxid from NCBI taxonomy. It can be as precise as possible (species, genus or even root)
		

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@13 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-05-02 10:10:27 +00:00
420cdb877b add a -k option to the ecoPCR binary to substitute superkingdom column by a kingdom column
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@12 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-03-27 16:33:50 +00:00
8c91d3d8f3 add a -k option to the ecoPCR binary to substitute superkingdom column by a kingdom column
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@11 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-03-27 16:29:20 +00:00
b2c307e611 replace bracket by braces
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@10 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-03-15 11:53:50 +00:00
9726434b46 Add patch in to eliminate sequence without taxonomic data
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@9 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-03-14 16:13:23 +00:00
78205cb1a3 patch to correct bug in switch between parts of the sequence database
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@8 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-02-15 17:23:39 +00:00
f31a7679c6 git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@7 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-02-15 15:17:47 +00:00
8d9e519b52 Add of CECILL Licence
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@6 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-02-15 14:21:28 +00:00
ebe8c0b516 Initial version of ecoPCR
git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@5 60f365c0-8329-0410-b2a4-ec073aeeaa1d
2007-02-15 13:33:32 +00:00
f3d2273d8d git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/trunk@3 60f365c0-8329-0410-b2a4-ec073aeeaa1d 2007-02-15 13:25:04 +00:00