OBIKmers/obikmer
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v1.1.42
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coissac fa82989ea9 Merge pull request 'refactor: centralize CPU core detection using cgroup-aware utility' (#63) from push-lqzukpulzykz into main 
Reviewed-on: #63
 2026-08-11 10:35:06 +00:00
coissac 2e7cfc4368 Merge pull request 'Push lsqnpxrxuvpp' (#62) from push-lsqnpxrxuvpp into main 
Reviewed-on: #62
 2026-08-11 09:09:23 +00:00
coissac dc3392865f Merge pull request 'Push qowsvpqmoukq' (#61) from push-qowsvpqmoukq into main 
Reviewed-on: #61
 2026-07-08 18:05:42 +00:00
coissac 165982fb07 Merge pull request 'Bump obikmer version to 1.1.38 and add memory footprint logging' (#60) from push-slxmykzqmzzv into main 
Reviewed-on: #60
 2026-07-08 10:15:51 +00:00
coissac dff5d2f457 Merge pull request 'Push smluomvxpptv' (#59) from push-smluomvxpptv into main 
Reviewed-on: #59
 2026-07-07 17:13:03 +00:00
coissac e96ad38c8e Merge pull request 'feat: filter zero-valued entries from kmer strict matches output' (#58) from push-rosnxrytzxzk into main 
Reviewed-on: #58
 2026-07-07 09:22:02 +00:00
coissac 5bdc0f826a Merge pull request 'fix: validate packed matrix columns before repacking' (#57) from push-vkqvorvsqnqx into main 
Reviewed-on: #57
 2026-07-03 15:26:55 +00:00
coissac 7844239a8e Merge pull request 'Push msotyzponsls' (#56) from push-msotyzponsls into main 
Reviewed-on: #56
 2026-07-03 11:28:49 +00:00
coissac 66ab4c6db1 Merge pull request 'feat(numa): introduce I/O sampling to prevent activation stalls' (#55) from push-ooruxnkktvvz into main 
Reviewed-on: #55
 2026-07-02 09:36:19 +00:00
coissac 6378734e1c Merge pull request 'fix(obisys): remove activation guard to always update metrics' (#54) from push-vkloynurrxzu into main 
Reviewed-on: #54
 2026-07-01 18:34:10 +00:00
coissac 2080e5e8a9 Merge pull request 'ci: fix registry auth and bump obikmer to 1.1.30' (#53) from push-zxlknspoxknt into main 
Reviewed-on: #53
 2026-07-01 14:20:09 +00:00
coissac aa126fd89d Merge pull request 'feat: simplify worker spawning logic and update macOS build workflow' (#52) from push-uvmlknmzqqnx into main 
Reviewed-on: #52
 2026-07-01 09:50:51 +00:00
coissac 19660f8cd0 Merge pull request 'ci: update registry auth and improve adaptive worker scaling' (#51) from push-qlpywtroutvx into main 
Reviewed-on: #51
 2026-06-26 13:16:23 +00:00
coissac 89c43e28f5 Merge pull request 'ci: update release workflow and bump obikmer to 1.1.26' (#50) from push-npttlqpomtvz into main 
Reviewed-on: #50
 2026-06-24 13:55:40 +00:00
coissac ca42fdff2f Merge pull request 'ci: update macOS ARM64 build workflow and bump obikmer version' (#49) from push-lllnsqlrqrut into main 
Reviewed-on: #49
 2026-06-23 13:15:20 +00:00
coissac a4bbf607b7 Merge pull request 'Push kxsopnzprltv' (#48) from push-kxsopnzprltv into main 
Reviewed-on: #48
 2026-06-23 09:51:33 +00:00
coissac ef62f1947e Merge pull request 'chore: bump version to 1.1.21 and update obikindex features' (#47) from push-xwutoxpnxorz into main 
Reviewed-on: #47
 2026-06-23 08:31:31 +00:00
coissac c323b3eaef Merge pull request 'Bump obikmer to 1.1.20 and update release workflow' (#46) from push-wpnywwlwxrps into main 
Reviewed-on: #46
 2026-06-23 08:03:58 +00:00
coissac 7c5bab3694 Merge pull request 'fix(ci): restrict workflow to PRs and improve release tagging' (#45) from push-louqrszyuqpz into main 
Reviewed-on: #45
 2026-06-23 07:52:35 +00:00
coissac 973a3f3d6e Merge pull request 'feat: add numa feature flag and automate release workflow' (#44) from push-uymxyvsyooro into main
CI / build (push) Successful in 3m16s
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Reviewed-on: #44
 2026-06-23 07:22:33 +00:00
coissac 2ea58703c7 Merge pull request 'Push zkptpswyxnvt' (#43) from push-zkptpswyxnvt into main
CI / build (push) Successful in 3m19s
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Reviewed-on: #43
 2026-06-22 16:29:59 +00:00
coissac 4e4cce2879 Merge pull request 'fix(ci): enable cross-compilation in release workflow and bump obikmer' (#42) from push-sxlpkrkyuttk into main
CI / build (push) Successful in 3m20s
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Reviewed-on: #42
 2026-06-22 14:31:26 +00:00
coissac 0a668cf8a6 Merge pull request 'chore: bump obikmer to 1.1.13 and fix Makefile revision tag' (#41) from push-qwzpxktnlyls into main
CI / build (push) Has been cancelled
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Reviewed-on: #41
 2026-06-22 14:18:25 +00:00
coissac bf9c9aeacb Merge pull request 'chore: bump version to 1.1.12 and fix release workflow' (#40) from push-zmkxouxypspm into main
CI / build (push) Has been cancelled
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Reviewed-on: #40
 2026-06-22 14:13:13 +00:00
coissac d16a867640 Merge pull request 'ci: bypass PEP 668 restrictions and update obikmer to 1.1.11' (#39) from push-mxysluysloxr into main
CI / build (push) Successful in 4m1s
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Release / build-linux-static (push) Failing after 7m28s
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Reviewed-on: #39
 2026-06-22 13:52:51 +00:00
coissac e22afe9621 Merge pull request 'chore: bump obikmer to 1.1.9 and update release workflow' (#38) from push-noxuppsknsol into main
CI / build (push) Successful in 3m11s
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Release / build-linux-static (push) Failing after 3m4s
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Reviewed-on: #38
 2026-06-22 13:32:50 +00:00
coissac a00bb37478 Merge pull request 'ci: switch to Zig build toolchain and bump obikmer to 1.1.7' (#37) from push-nvvqmzmrotxx into main
CI / build (push) Successful in 3m14s
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Release / build-linux-static (push) Failing after 2m42s
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Reviewed-on: #37
 2026-06-22 13:20:12 +00:00
coissac 6baf2e64ca Merge pull request 'chore: bump obikmer to 1.1.6 and automate git tagging' (#36) from push-yxmtknzsynpx into main
CI / build (push) Successful in 3m20s
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Release / build-linux-static (push) Failing after 4m30s
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Reviewed-on: #36
 2026-06-22 13:01:06 +00:00
coissac a609c1af95 Merge pull request 'ci: streamline release workflow and bump obikmer to 0.1.4' (#35) from push-zokprynyqunu into main
CI / build (push) Successful in 4m41s
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Release / build-linux-static (push) Failing after 6m4s
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Reviewed-on: #35
 2026-06-22 09:38:36 +00:00
coissac c4c71dc892 Merge pull request 'Push mtzqmmrlmzzx' (#34) from push-mtzqmmrlmzzx into main
CI / build (push) Successful in 4m34s
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Reviewed-on: #34
 2026-06-22 08:47:24 +00:00
coissac 9578f991f4 Merge pull request 'Push pslsukyowzrp' (#32) from push-pslsukyowzrp into main 
Reviewed-on: #32
 2026-06-15 16:29:24 +00:00
coissac a9567ad023 Merge pull request 'Push rtnzuqxzmkon' (#31) from push-rtnzuqxzmkon into main 
Reviewed-on: #31
 2026-06-15 09:40:35 +00:00
coissac 313d73838a Merge pull request 'feat: add pipeline concurrency throttling and HPC build docs' (#30) from push-owwylwtskwzw into main 
Reviewed-on: #30
 2026-06-15 08:33:41 +00:00
coissac c6ea0c53e3 Merge pull request 'feat: implement NUMA-aware worker pools for merge command' (#29) from push-wusvurukprsr into main 
Reviewed-on: #29
 2026-06-14 21:57:21 +00:00
coissac f1d76f3203 Merge pull request 'refactor(merge): extract adaptive worker spawn logic' (#28) from push-yzruqtyqvopm into main 
Reviewed-on: #28
 2026-06-13 12:56:34 +00:00
coissac 817b02cbc1 Merge pull request 'Push zkspuxlpumpw' (#27) from push-zkspuxlpumpw into main 
Reviewed-on: #27
 2026-06-13 11:25:12 +00:00
coissac fb5b53dca9 Merge pull request 'Push ooxwzorvsqvy' (#26) from push-ooxwzorvsqvy into main 
Reviewed-on: #26
 2026-06-13 09:59:07 +00:00
coissac 7208dcbb4a Merge pull request 'refactor: defer SrcLayerData lookups in RawBatch' (#25) from push-nxrynoorswrw into main 
Reviewed-on: #25
 2026-06-12 20:19:21 +00:00
coissac 9ea1dff5d6 Merge pull request 'Push rwqsmuvystym' (#24) from push-rwqsmuvystym into main 
Reviewed-on: #24
 2026-06-12 19:33:20 +00:00
coissac db9c604199 Merge pull request 'feat: enhance memory budgeting and add rebuild diagnostics' (#23) from push-nptzpkomspkv into main 
Reviewed-on: #23
 2026-06-12 13:21:12 +00:00
coissac 97e3fb9761 Merge pull request 'Push ylnwstyzqwrt' (#22) from push-ylnwstyzqwrt into main 
Reviewed-on: #22
 2026-06-12 10:10:03 +00:00
coissac 94e0a370b3 Merge pull request 'Push tmpsxsztwpxl' (#21) from push-tmpsxsztwpxl into main 
Reviewed-on: #21
 2026-06-09 13:31:25 +00:00
coissac b0dab452f6 Merge pull request 'refactor: optimize dump partition iteration and add progress tracking' (#20) from push-xqswlxlvmyrq into main 
Reviewed-on: #20
 2026-06-09 09:34:13 +00:00
coissac f65ecd19cc Merge pull request 'Push lrwmyplxxzkn' (#19) from push-lrwmyplxxzkn into main 
Reviewed-on: #19
 2026-06-09 08:28:20 +00:00
coissac 650eea43b6 Merge pull request 'Push quqlpklvxsqx' (#18) from push-quqlpklvxsqx into main 
Reviewed-on: #18
 2026-06-08 18:15:01 +00:00
coissac 3f47e22083 Merge pull request 'Push pvqkqxlkkwry' (#17) from push-pvqkqxlkkwry into main 
Reviewed-on: #17
 2026-06-06 04:44:10 +00:00
coissac ea2c594c86 Merge pull request 'Push ruqusmkoyvwm' (#16) from push-ruqusmkoyvwm into main 
Reviewed-on: #16
 2026-06-05 08:41:08 +00:00
coissac edc18b4908 Merge pull request 'Push rrwpnquuzsvr' (#15) from push-rrwpnquuzsvr into main 
Reviewed-on: #15
 2026-06-03 17:04:25 +00:00
coissac 7a29ca6305 Merge pull request 'Push ywwwypqxrtmy' (#14) from push-ywwwypqxrtmy into main 
Reviewed-on: #14
 2026-06-03 13:18:41 +00:00
coissac 4fd0eb989f Merge pull request 'Push pnxswqpxlyso' (#13) from push-pnxswqpxlyso into main 
Reviewed-on: #13
 2026-06-01 12:45:46 +00:00
coissac 728476a0a6 Merge pull request 'Push rxrxptuxltlp' (#12) from push-rxrxptuxltlp into main 
Reviewed-on: #12
 2026-05-30 14:03:13 +00:00
coissac 3138f6382c Merge pull request 'Push nvyqwlpspwvl' (#11) from push-nvyqwlpspwvl into main 
Reviewed-on: #11
 2026-05-29 07:21:58 +00:00
coissac 82ec6aa1cf Merge pull request 'Push tklvqnrqtzpo' (#10) from push-tklvqnrqtzpo into main 
Reviewed-on: #10
 2026-05-26 15:41:05 +00:00
coissac 6f7abddeaf Merge pull request 'Push vqmnuyrkpxot' (#9) from push-vqmnuyrkpxot into main 
Reviewed-on: #9
 2026-05-26 09:05:50 +00:00
coissac 88365e444c Merge pull request 'Push kztouvrzoqym' (#8) from push-kztouvrzoqym into main 
Reviewed-on: #8
 2026-05-23 12:04:50 +00:00
coissac 9b700ff4a4 Merge pull request 'feat: Implement RAII-based file handle throttling' (#7) from push-qtnvlqlooklx into main 
Reviewed-on: #7
 2026-05-22 12:03:40 +00:00
coissac 6c1a8da2d1 Merge pull request 'feat: limit concurrent open files during scatter' (#6) from push-rkytvkympxrn into main 
Reviewed-on: #6
 2026-05-22 09:33:39 +00:00
coissac 1ba6690256 Merge pull request 'refactor(scatter): move logging call into pipeline closure' (#5) from push-txyqunyttswl into main 
Reviewed-on: #5
 2026-05-22 09:15:05 +00:00
coissac df28cadc41 Merge pull request 'feat: add input file logging and optimize path traversal' (#4) from push-zoyvrpponqqo into main 
Reviewed-on: #4
 2026-05-22 09:04:42 +00:00
coissac fe0832190b Merge pull request 'feat(obiread): add static bzip2 and lzma compression support' (#3) from push-qpvrrxpnqlkw into main 
Reviewed-on: #3
 2026-05-22 08:29:42 +00:00
coissac 3d58a32613 Merge pull request 'feat: introduce genome metadata tracking and CSV export' (#2) from push-zrlrptrsrlkk into main 
Reviewed-on: #2
 2026-05-22 07:36:11 +00:00
coissac 77a0186fae Merge pull request 'Push qkpyqurltlpk' (#1) from push-qkpyqurltlpk into main 
Reviewed-on: #1
 2026-05-21 16:57:19 +00:00