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v1.2.0
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No files matched your search
@@ -0,0 +1,35 @@
|
|||||||
|
pname: CI
|
||||||
|
|
||||||
|
on:
|
||||||
|
pull_request:
|
||||||
|
branches: ['main']
|
||||||
|
|
||||||
|
jobs:
|
||||||
|
build:
|
||||||
|
runs-on: ubuntu-latest
|
||||||
|
defaults:
|
||||||
|
run:
|
||||||
|
working-directory: src
|
||||||
|
steps:
|
||||||
|
- uses: actions/checkout@v4
|
||||||
|
|
||||||
|
- name: Install Rust
|
||||||
|
run: |
|
||||||
|
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
|
||||||
|
echo "$HOME/.cargo/bin" >> $GITHUB_PATH
|
||||||
|
|
||||||
|
- name: Cache cargo registry
|
||||||
|
uses: actions/cache@v4
|
||||||
|
with:
|
||||||
|
path: |
|
||||||
|
~/.cargo/registry
|
||||||
|
~/.cargo/git
|
||||||
|
src/target
|
||||||
|
key: ${{ runner.os }}-cargo-v2-${{ hashFiles('src/Cargo.lock') }}
|
||||||
|
restore-keys: ${{ runner.os }}-cargo-v2-
|
||||||
|
|
||||||
|
- name: Build
|
||||||
|
run: cargo build --release
|
||||||
|
|
||||||
|
- name: Test
|
||||||
|
run: cargo test --release
|
||||||
@@ -0,0 +1,127 @@
|
|||||||
|
name: Release
|
||||||
|
|
||||||
|
on:
|
||||||
|
push:
|
||||||
|
tags:
|
||||||
|
- "v*"
|
||||||
|
|
||||||
|
jobs:
|
||||||
|
create-release:
|
||||||
|
runs-on: ubuntu-latest
|
||||||
|
outputs:
|
||||||
|
release_id: ${{ steps.create.outputs.release_id }}
|
||||||
|
steps:
|
||||||
|
- uses: actions/checkout@v4
|
||||||
|
with:
|
||||||
|
fetch-depth: 0
|
||||||
|
|
||||||
|
- name: Create Gitea release
|
||||||
|
id: create
|
||||||
|
env:
|
||||||
|
GITEA_TOKEN: ${{ secrets.GITEATOKEN }}
|
||||||
|
TAG: ${{ github.ref_name }}
|
||||||
|
run: |
|
||||||
|
sudo apt-get update -qq && sudo apt-get install -y -qq jq
|
||||||
|
body=$(git for-each-ref --format='%(contents)' "refs/tags/$TAG")
|
||||||
|
release_id=$(curl -s -X POST \
|
||||||
|
"${{ github.server_url }}/api/v1/repos/${{ github.repository }}/releases" \
|
||||||
|
-H "Authorization: token $GITEA_TOKEN" \
|
||||||
|
-H "Content-Type: application/json" \
|
||||||
|
-d "{\"tag_name\":\"$TAG\",\"name\":\"$TAG\",\"body\":$(echo "$body" | jq -Rs .)}" | jq -r '.id')
|
||||||
|
echo "release_id=$release_id" >> $GITHUB_OUTPUT
|
||||||
|
|
||||||
|
build-linux-x86_64:
|
||||||
|
needs: create-release
|
||||||
|
runs-on: ubuntu-latest
|
||||||
|
defaults:
|
||||||
|
run:
|
||||||
|
working-directory: src
|
||||||
|
steps:
|
||||||
|
- uses: actions/checkout@v4
|
||||||
|
|
||||||
|
- name: Install Rust + zigbuild
|
||||||
|
run: |
|
||||||
|
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y --default-toolchain stable
|
||||||
|
echo "$HOME/.cargo/bin" >> $GITHUB_PATH
|
||||||
|
sudo apt-get update -qq && sudo apt-get install -y -qq jq
|
||||||
|
pip install ziglang --quiet --break-system-packages
|
||||||
|
$HOME/.cargo/bin/cargo install cargo-zigbuild
|
||||||
|
$HOME/.cargo/bin/rustup target add x86_64-unknown-linux-musl
|
||||||
|
|
||||||
|
- name: Create musl C/C++ wrappers
|
||||||
|
run: |
|
||||||
|
ZIG=$(python3 -c "import ziglang, os; print(os.path.join(os.path.dirname(ziglang.__file__), 'zig'))")
|
||||||
|
printf '#!/bin/sh\nexec "%s" cc -target x86_64-linux-musl "$@"\n' "$ZIG" | sudo tee /usr/local/bin/x86_64-linux-musl-gcc > /dev/null
|
||||||
|
printf '#!/bin/sh\nexec "%s" c++ -target x86_64-linux-musl "$@"\n' "$ZIG" | sudo tee /usr/local/bin/x86_64-linux-musl-g++ > /dev/null
|
||||||
|
sudo chmod +x /usr/local/bin/x86_64-linux-musl-gcc /usr/local/bin/x86_64-linux-musl-g++
|
||||||
|
|
||||||
|
- name: Cache cargo registry
|
||||||
|
uses: actions/cache@v4
|
||||||
|
with:
|
||||||
|
path: |
|
||||||
|
~/.cargo/registry
|
||||||
|
~/.cargo/git
|
||||||
|
src/target
|
||||||
|
key: linux-musl-cargo-${{ hashFiles('src/Cargo.lock') }}
|
||||||
|
restore-keys: linux-musl-cargo-
|
||||||
|
|
||||||
|
- name: Build static binary
|
||||||
|
env:
|
||||||
|
PKG_CONFIG_ALLOW_CROSS: "1"
|
||||||
|
run: cargo zigbuild --release --target x86_64-unknown-linux-musl
|
||||||
|
|
||||||
|
- name: Prepare and upload artifact
|
||||||
|
env:
|
||||||
|
GITEA_TOKEN: ${{ secrets.GITEATOKEN }}
|
||||||
|
RELEASE_ID: ${{ needs.create-release.outputs.release_id }}
|
||||||
|
run: |
|
||||||
|
mkdir -p /tmp/dist
|
||||||
|
cp target/x86_64-unknown-linux-musl/release/obikmer /tmp/dist/obikmer-linux-x86_64
|
||||||
|
strip /tmp/dist/obikmer-linux-x86_64
|
||||||
|
curl -s -X POST \
|
||||||
|
"${{ github.server_url }}/api/v1/repos/${{ github.repository }}/releases/$RELEASE_ID/assets" \
|
||||||
|
-H "Authorization: token $GITEA_TOKEN" \
|
||||||
|
-F "attachment=@/tmp/dist/obikmer-linux-x86_64"
|
||||||
|
|
||||||
|
build-macos-arm64:
|
||||||
|
needs: create-release
|
||||||
|
runs-on: ubuntu-latest
|
||||||
|
steps:
|
||||||
|
- uses: actions/checkout@v4
|
||||||
|
|
||||||
|
- name: Login to registry
|
||||||
|
run: echo "${{ secrets.REGISTRYTOKEN }}" | docker login registry.metabarcoding.org -u ${{ secrets.REGISTRYUSER }} --password-stdin
|
||||||
|
|
||||||
|
- name: Cache cargo registry
|
||||||
|
uses: actions/cache@v4
|
||||||
|
with:
|
||||||
|
path: |
|
||||||
|
~/.cargo/registry
|
||||||
|
~/.cargo/git
|
||||||
|
src/target
|
||||||
|
key: macos-arm64-cargo-${{ hashFiles('src/Cargo.lock') }}
|
||||||
|
restore-keys: macos-arm64-cargo-
|
||||||
|
|
||||||
|
- name: Build macOS binary
|
||||||
|
run: |
|
||||||
|
CID=$(docker create \
|
||||||
|
-w /src/src \
|
||||||
|
registry.metabarcoding.org/cibuilder/rustcrossosx:latest \
|
||||||
|
cargo build --release --target aarch64-apple-darwin --no-default-features)
|
||||||
|
docker cp . "$CID:/src"
|
||||||
|
docker start -a "$CID"
|
||||||
|
STATUS=$(docker wait "$CID")
|
||||||
|
mkdir -p /tmp/dist
|
||||||
|
docker cp "$CID:/src/src/target/aarch64-apple-darwin/release/obikmer" /tmp/dist/obikmer-macos-arm64
|
||||||
|
docker rm "$CID" > /dev/null
|
||||||
|
[ "$STATUS" -eq 0 ]
|
||||||
|
|
||||||
|
- name: Prepare and upload artifact
|
||||||
|
env:
|
||||||
|
GITEA_TOKEN: ${{ secrets.GITEATOKEN }}
|
||||||
|
RELEASE_ID: ${{ needs.create-release.outputs.release_id }}
|
||||||
|
run: |
|
||||||
|
curl -s -X POST \
|
||||||
|
"${{ github.server_url }}/api/v1/repos/${{ github.repository }}/releases/$RELEASE_ID/assets" \
|
||||||
|
-H "Authorization: token $GITEA_TOKEN" \
|
||||||
|
-F "attachment=@/tmp/dist/obikmer-macos-arm64"
|
||||||
+31
@@ -8,4 +8,35 @@ data-stress
|
|||||||
*.pb
|
*.pb
|
||||||
./**/*.json
|
./**/*.json
|
||||||
*.bin
|
*.bin
|
||||||
|
*.log
|
||||||
|
*.csv
|
||||||
Betula_exilis--IGA-24-33
|
Betula_exilis--IGA-24-33
|
||||||
|
benchmark/genomes
|
||||||
|
benchmark/genomes_orig
|
||||||
|
benchmark/simulated_data
|
||||||
|
benchmark/specimen_index_presence
|
||||||
|
benchmark/specimen_index_count
|
||||||
|
benchmark/global_index_presence
|
||||||
|
benchmark/global_index_presence_orig
|
||||||
|
benchmark/global_index_presence_sav
|
||||||
|
benchmark/all_specific
|
||||||
|
benchmark/global_index_count
|
||||||
|
benchmark/stats
|
||||||
|
benchmark/reference_index
|
||||||
|
benchmark/reference_dist
|
||||||
|
benchmark/obikmer_dist
|
||||||
|
benchmark/specific_index_count
|
||||||
|
benchmark/specific_index_presence
|
||||||
|
TNT
|
||||||
|
phyg
|
||||||
|
biblio
|
||||||
|
*.tnt
|
||||||
|
*.tre
|
||||||
|
*.phy
|
||||||
|
*.treefile
|
||||||
|
*.bionj
|
||||||
|
*.iqtree
|
||||||
|
*.mldist
|
||||||
|
*.parstree
|
||||||
|
*.ckp.gz
|
||||||
|
*.model
|
||||||
@@ -0,0 +1,2 @@
|
|||||||
|
/cache
|
||||||
|
/project.local.yml
|
||||||
@@ -0,0 +1,133 @@
|
|||||||
|
# the name by which the project can be referenced within Serena
|
||||||
|
project_name: "obikmer"
|
||||||
|
|
||||||
|
|
||||||
|
# list of languages for which language servers are started; choose from:
|
||||||
|
# al angular ansible bash clojure
|
||||||
|
# cpp cpp_ccls crystal csharp csharp_omnisharp
|
||||||
|
# dart elixir elm erlang fortran
|
||||||
|
# fsharp go groovy haskell haxe
|
||||||
|
# hlsl html java json julia
|
||||||
|
# kotlin lean4 lua luau markdown
|
||||||
|
# matlab msl nix ocaml pascal
|
||||||
|
# perl php php_phpactor powershell python
|
||||||
|
# python_jedi python_ty r rego ruby
|
||||||
|
# ruby_solargraph rust scala scss solidity
|
||||||
|
# svelte swift systemverilog terraform toml
|
||||||
|
# typescript typescript_vts vue yaml zig
|
||||||
|
# (This list may be outdated. For the current list, see values of Language enum here:
|
||||||
|
# https://github.com/oraios/serena/blob/main/src/solidlsp/ls_config.py
|
||||||
|
# For some languages, there are alternative language servers, e.g. csharp_omnisharp, ruby_solargraph.)
|
||||||
|
# Note:
|
||||||
|
# - For C, use cpp
|
||||||
|
# - For JavaScript, use typescript
|
||||||
|
# - For Angular projects, use angular (subsumes typescript+html; requires `npm install` in the project root)
|
||||||
|
# - For Svelte projects, use svelte (subsumes typescript/javascript for .svelte projects; requires npm)
|
||||||
|
# - For SCSS / Sass / plain CSS, use scss (some-sass-language-server handles all three)
|
||||||
|
# - For Free Pascal/Lazarus, use pascal
|
||||||
|
# Special requirements:
|
||||||
|
# Some languages require additional setup/installations.
|
||||||
|
# See here for details: https://oraios.github.io/serena/01-about/020_programming-languages.html#language-servers
|
||||||
|
# When using multiple languages, the first language server that supports a given file will be used for that file.
|
||||||
|
# The first language is the default language and the respective language server will be used as a fallback.
|
||||||
|
# Note that when using the JetBrains backend, language servers are not used and this list is correspondingly ignored.
|
||||||
|
languages:
|
||||||
|
- rust
|
||||||
|
|
||||||
|
# the encoding used by text files in the project
|
||||||
|
# For a list of possible encodings, see https://docs.python.org/3.11/library/codecs.html#standard-encodings
|
||||||
|
encoding: "utf-8"
|
||||||
|
|
||||||
|
# line ending convention to use when writing source files.
|
||||||
|
# Possible values: unset (use global setting), "lf", "crlf", or "native" (platform default)
|
||||||
|
# This does not affect Serena's own files (e.g. memories and configuration files), which always use native line endings.
|
||||||
|
line_ending:
|
||||||
|
|
||||||
|
# The language backend to use for this project.
|
||||||
|
# If not set, the global setting from serena_config.yml is used.
|
||||||
|
# Valid values: LSP, JetBrains
|
||||||
|
# Note: the backend is fixed at startup. If a project with a different backend
|
||||||
|
# is activated post-init, an error will be returned.
|
||||||
|
language_backend:
|
||||||
|
|
||||||
|
# whether to use project's .gitignore files to ignore files
|
||||||
|
ignore_all_files_in_gitignore: true
|
||||||
|
|
||||||
|
# advanced configuration option allowing to configure language server-specific options.
|
||||||
|
# Maps the language key to the options.
|
||||||
|
# Have a look at the docstring of the constructors of the LS implementations within solidlsp (e.g., for C# or PHP) to see which options are available.
|
||||||
|
# No documentation on options means no options are available.
|
||||||
|
ls_specific_settings: {}
|
||||||
|
|
||||||
|
# list of additional workspace folder paths for cross-package reference support (e.g. in monorepos).
|
||||||
|
# Paths can be absolute or relative to the project root.
|
||||||
|
# Each folder is registered as an LSP workspace folder, enabling language servers to discover
|
||||||
|
# symbols and references across package boundaries.
|
||||||
|
# Currently supported for: TypeScript.
|
||||||
|
# Example:
|
||||||
|
# additional_workspace_folders:
|
||||||
|
# - ../sibling-package
|
||||||
|
# - ../shared-lib
|
||||||
|
additional_workspace_folders: []
|
||||||
|
|
||||||
|
# list of additional paths to ignore in this project.
|
||||||
|
# Same syntax as gitignore, so you can use * and **.
|
||||||
|
# Note: global ignored_paths from serena_config.yml are also applied additively.
|
||||||
|
ignored_paths: []
|
||||||
|
|
||||||
|
# whether the project is in read-only mode
|
||||||
|
# If set to true, all editing tools will be disabled and attempts to use them will result in an error
|
||||||
|
# Added on 2025-04-18
|
||||||
|
read_only: false
|
||||||
|
|
||||||
|
# list of tool names to exclude.
|
||||||
|
# This extends the existing exclusions (e.g. from the global configuration)
|
||||||
|
# Find the list of tools here: https://oraios.github.io/serena/01-about/035_tools.html
|
||||||
|
excluded_tools: []
|
||||||
|
|
||||||
|
# list of tools to include that would otherwise be disabled (particularly optional tools that are disabled by default).
|
||||||
|
# This extends the existing inclusions (e.g. from the global configuration).
|
||||||
|
# Find the list of tools here: https://oraios.github.io/serena/01-about/035_tools.html
|
||||||
|
included_optional_tools: []
|
||||||
|
|
||||||
|
# fixed set of tools to use as the base tool set (if non-empty), replacing Serena's default set of tools.
|
||||||
|
# This cannot be combined with non-empty excluded_tools or included_optional_tools.
|
||||||
|
# Find the list of tools here: https://oraios.github.io/serena/01-about/035_tools.html
|
||||||
|
fixed_tools: []
|
||||||
|
|
||||||
|
# list of mode names that are to be activated by default, overriding the setting in the global configuration.
|
||||||
|
# The full set of modes to be activated is base_modes (from global config) + default_modes + added_modes.
|
||||||
|
# If the setting is undefined/empty, the default_modes from the global configuration (serena_config.yml) apply.
|
||||||
|
# Otherwise, this overrides the setting from the global configuration (serena_config.yml).
|
||||||
|
# Therefore, you can set this to [] if you do not want the default modes defined in the global config to apply
|
||||||
|
# for this project.
|
||||||
|
# This setting can, in turn, be overridden by CLI parameters (--mode).
|
||||||
|
# See https://oraios.github.io/serena/02-usage/050_configuration.html#modes
|
||||||
|
default_modes:
|
||||||
|
|
||||||
|
# list of mode names to be activated additionally for this project, e.g. ["query-projects"]
|
||||||
|
# The full set of modes to be activated is base_modes (from global config) + default_modes + added_modes.
|
||||||
|
# See https://oraios.github.io/serena/02-usage/050_configuration.html#modes
|
||||||
|
added_modes:
|
||||||
|
|
||||||
|
# initial prompt for the project. It will always be given to the LLM upon activating the project
|
||||||
|
# (contrary to the memories, which are loaded on demand).
|
||||||
|
initial_prompt: ""
|
||||||
|
|
||||||
|
# time budget (seconds) per tool call for the retrieval of additional symbol information
|
||||||
|
# such as docstrings or parameter information.
|
||||||
|
# This overrides the corresponding setting in the global configuration; see the documentation there.
|
||||||
|
# If null or missing, use the setting from the global configuration.
|
||||||
|
symbol_info_budget:
|
||||||
|
|
||||||
|
# list of regex patterns which, when matched, mark a memory entry as read‑only.
|
||||||
|
# Extends the list from the global configuration, merging the two lists.
|
||||||
|
read_only_memory_patterns: []
|
||||||
|
|
||||||
|
# list of regex patterns for memories to completely ignore.
|
||||||
|
# Matching memories will not appear in list_memories or activate_project output
|
||||||
|
# and cannot be accessed via read_memory or write_memory.
|
||||||
|
# To access ignored memory files, use the read_file tool on the raw file path.
|
||||||
|
# Extends the list from the global configuration, merging the two lists.
|
||||||
|
# Example: ["_archive/.*", "_episodes/.*"]
|
||||||
|
ignored_memory_patterns: []
|
||||||
@@ -12,8 +12,8 @@ Si une dépendance demandée pose problème (erreur de compilation, bug, API man
|
|||||||
Quand une nouvelle construction (type, itérateur, abstraction) rend du code historique injustifié, le signaler immédiatement et proposer de le supprimer — ne pas conserver les deux en parallèle par inertie. Le développeur demande explicitement de remettre en cause le code base : ne pas attendre qu'il insiste.
|
Quand une nouvelle construction (type, itérateur, abstraction) rend du code historique injustifié, le signaler immédiatement et proposer de le supprimer — ne pas conserver les deux en parallèle par inertie. Le développeur demande explicitement de remettre en cause le code base : ne pas attendre qu'il insiste.
|
||||||
|
|
||||||
Tu maintiens en **anglais**, dense et sans remplissage, les documents suivants :
|
Tu maintiens en **anglais**, dense et sans remplissage, les documents suivants :
|
||||||
- `docmd/index.md` — document de discussion de base, enrichi progressivement au fil de nos échanges ; il reflète l'état courant de la réflexion sur le projet
|
- `DevDocMD/index.md` — document de discussion de base, enrichi progressivement au fil de nos échanges ; il reflète l'état courant de la réflexion sur le projet
|
||||||
- les autres fichiers Markdown dans `docmd/` selon leur thème respectif
|
- les autres fichiers Markdown dans `DevDocMD/` selon leur thème respectif
|
||||||
|
|
||||||
Les snippets de code y sont courts et illustrent uniquement des principes architecturaux. Nos échanges se font en **français**.
|
Les snippets de code y sont courts et illustrent uniquement des principes architecturaux. Nos échanges se font en **français**.
|
||||||
|
|
||||||
@@ -42,34 +42,62 @@ Les snippets de code y sont courts et illustrent uniquement des principes archit
|
|||||||
|
|
||||||
## Infrastructure de documentation
|
## Infrastructure de documentation
|
||||||
|
|
||||||
La documentation est gérée via **MkDocs + thème Material**, avec publication sur **GitHub Pages**.
|
La documentation est gérée via **MkDocs + thème Material**, avec publication sur **GitHub Pages**. Deux arbres de documentation indépendants, deux configurations à la racine du dépôt (voir aussi `UserDocMD/` ci-dessous pour la doc utilisateur) :
|
||||||
|
|
||||||
**Structure des répertoires**
|
**Structure des répertoires**
|
||||||
|
|
||||||
```
|
```
|
||||||
docmd/ ← sources Markdown + mkdocs.yml
|
DevDocMD/ ← sources Markdown, doc développeur (discussion, historique, rationale)
|
||||||
docmd/mkdocs.yml
|
UserDocMD/ ← sources Markdown, doc utilisateur (état factuel courant, sans code Rust)
|
||||||
doc/ ← site HTML généré (servi par GitHub Pages)
|
mkdocs.yml ← config doc développeur : docs_dir DevDocMD, site_dir DevDoc
|
||||||
|
mkdocs-user.yml ← config doc utilisateur : docs_dir UserDocMD, site_dir doc
|
||||||
|
DevDoc/ ← site HTML généré (doc développeur)
|
||||||
|
doc/ ← site HTML généré (doc utilisateur — publié par GitHub Pages, répertoire par défaut)
|
||||||
.venv/ ← environnement Python (ignoré par git)
|
.venv/ ← environnement Python (ignoré par git)
|
||||||
```
|
```
|
||||||
|
|
||||||
**Configuration `docmd/mkdocs.yml`**
|
|
||||||
- `docs_dir: .` (sources = `docmd/` lui-même)
|
|
||||||
- `site_dir: ../doc` (sortie = `doc/`)
|
|
||||||
|
|
||||||
**Commandes Makefile**
|
**Commandes Makefile**
|
||||||
|
|
||||||
| Commande | Effet |
|
| Commande | Effet |
|
||||||
|---|---|
|
|---|---|
|
||||||
| `make doc` | Construit le HTML dans `doc/` |
|
| `make doc` | Construit la doc développeur dans `DevDoc/` |
|
||||||
| `make doc-serve` | Serveur local avec rechargement automatique |
|
| `make doc-serve` | Serveur local (doc développeur), rechargement automatique |
|
||||||
| `make clean-doc` | Supprime `doc/` |
|
| `make clean-doc` | Supprime `DevDoc/` |
|
||||||
| `make clean` | Supprime `doc/` et `.venv/` |
|
| `make doc-user` | Construit la doc utilisateur dans `doc/` |
|
||||||
|
| `make doc-user-serve` | Serveur local (doc utilisateur), rechargement automatique |
|
||||||
|
| `make clean-doc-user` | Supprime `doc/` |
|
||||||
|
| `make clean` | Supprime `DevDoc/`, `doc/` et `.venv/` |
|
||||||
|
|
||||||
Le `.venv/` est dans `.gitignore`. Le répertoire `doc/` (sortie HTML) est versionné pour GitHub Pages.
|
Le `.venv/` est dans `.gitignore`. `DevDoc/` et `doc/` (sorties HTML) sont versionnés — `doc/` spécifiquement parce que c'est le répertoire par défaut que GitHub Pages sert.
|
||||||
|
|
||||||
Lors de l'ajout de nouveaux fichiers Markdown dans `docmd/`, mettre à jour la section `nav:` de `docmd/mkdocs.yml`.
|
Lors de l'ajout de nouveaux fichiers Markdown dans `DevDocMD/`, mettre à jour la section `nav:` de `mkdocs.yml` ; dans `UserDocMD/`, mettre à jour `mkdocs-user.yml`.
|
||||||
|
|
||||||
---
|
---
|
||||||
|
|
||||||
Je continue à poser mes questions et à guider la discussion.
|
Je continue à poser mes questions et à guider la discussion.
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## MCP Tools
|
||||||
|
|
||||||
|
**Règle absolue : avant tout travail de code, appeler `mcp__serena__initial_instructions` pour charger les instructions Serena.**
|
||||||
|
|
||||||
|
### Hiérarchie des outils pour ce projet Rust
|
||||||
|
|
||||||
|
**Navigation et édition de code → serena en priorité**
|
||||||
|
- Trouver un symbole, une déclaration, les implémentations d'un trait : `mcp__serena__find_symbol`, `mcp__serena__find_declaration`, `mcp__serena__find_implementations`
|
||||||
|
- Trouver les usages d'un symbole : `mcp__serena__find_referencing_symbols`
|
||||||
|
- Diagnostics LSP (erreurs de compilation) : `mcp__serena__get_diagnostics_for_file`
|
||||||
|
- Vue d'ensemble d'un fichier : `mcp__serena__get_symbols_overview`
|
||||||
|
- Modifier le corps d'une fonction/impl : `mcp__serena__replace_symbol_body`
|
||||||
|
- Ne pas utiliser `cclsp` quand serena couvre le besoin
|
||||||
|
|
||||||
|
**Analyse architecturale → jcodemunch**
|
||||||
|
- Hotspots, couplage, dead code, dépendances entre modules
|
||||||
|
- Utiliser avant de refactorer une zone critique
|
||||||
|
|
||||||
|
**Raisonnement complexe → sequential-thinking**
|
||||||
|
- Décisions d'architecture, choix d'algorithme, trade-offs non triviaux
|
||||||
|
|
||||||
|
**Documentation de crates → context7**
|
||||||
|
- Toujours consulter avant d'utiliser une API de bibliothèque externe
|
||||||
+1219
File diff suppressed because it is too large.
Load diff
File renamed without changes.
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
+320
-13
@@ -9,7 +9,7 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<link rel="prev" href="../../../implementation/persistent_bit_vec/">
|
<link rel="prev" href="../../../implementation/obitaxonomy/">
|
||||||
|
|
||||||
|
|
||||||
<link rel="next" href="../../index_architecture/">
|
<link rel="next" href="../../index_architecture/">
|
||||||
@@ -182,6 +182,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../installation/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Installation
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -191,10 +218,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_2" >
|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3" >
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_2" id="__nav_2_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_3" id="__nav_3_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -212,8 +239,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_2_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_2">
|
<label class="md-nav__title" for="__nav_3">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -363,6 +390,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../theory/evolutionary_distances/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Central-position SNP distance (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
|
|
||||||
@@ -385,10 +440,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3" >
|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4" >
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_3" id="__nav_3_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_4" id="__nav_4_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -406,8 +461,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_4_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_3">
|
<label class="md-nav__title" for="__nav_4">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -647,6 +702,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../implementation/evidence_elimination/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Evidence elimination (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<li class="md-nav__item">
|
<li class="md-nav__item">
|
||||||
<a href="../../../implementation/obilayeredmap/" class="md-nav__link">
|
<a href="../../../implementation/obilayeredmap/" class="md-nav__link">
|
||||||
|
|
||||||
@@ -725,6 +808,146 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../implementation/merge/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Merge command
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../implementation/merge_parallelism/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Merge parallelism & memory
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../implementation/filtering/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Kmer filtering
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../implementation/select/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Select command
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../../implementation/obitaxonomy/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
obitaxonomy crate
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
|
|
||||||
@@ -749,10 +972,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4" checked>
|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_5" checked>
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_4" id="__nav_4_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_5" id="__nav_5_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -770,8 +993,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_4_label" aria-expanded="true">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_5_label" aria-expanded="true">
|
||||||
<label class="md-nav__title" for="__nav_4">
|
<label class="md-nav__title" for="__nav_5">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -847,6 +1070,90 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../siblings/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Sibling annex (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../numa_worker_pools/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
NUMA-aware worker pools
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../numa_partition_runner/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
NUMA-aware partition runner
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
|
|
||||||
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|
After Width: | Height: | Size: 1.8 KiB |
@@ -0,0 +1,16 @@
|
|||||||
|
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||||||
|
* escape-html
|
||||||
|
* Copyright(c) 2012-2013 TJ Holowaychuk
|
||||||
|
* Copyright(c) 2015 Andreas Lubbe
|
||||||
|
* Copyright(c) 2015 Tiancheng "Timothy" Gu
|
||||||
|
* MIT Licensed
|
||||||
|
*/var qa=/["'&<>]/;Rn.exports=Ka;function Ka(e){var t=""+e,r=qa.exec(t);if(!r)return t;var o,n="",i=0,s=0;for(i=r.index;i<t.length;i++){switch(t.charCodeAt(i)){case 34:o=""";break;case 38:o="&";break;case 39:o="'";break;case 60:o="<";break;case 62:o=">";break;default:continue}s!==i&&(n+=t.substring(s,i)),s=i+1,n+=o}return s!==i?n+t.substring(s,i):n}});var ao=Cr((Nt,io)=>{/*!
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||||||
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* clipboard.js v2.0.11
|
||||||
|
* https://clipboardjs.com/
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||||||
|
*
|
||||||
|
* Licensed MIT © Zeno Rocha
|
||||||
|
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|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Danish` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
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||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.da=function(){this.pipeline.reset(),this.pipeline.add(e.da.trimmer,e.da.stopWordFilter,e.da.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.da.stemmer))},e.da.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.da.trimmer=e.trimmerSupport.generateTrimmer(e.da.wordCharacters),e.Pipeline.registerFunction(e.da.trimmer,"trimmer-da"),e.da.stemmer=function(){var r=e.stemmerSupport.Among,i=e.stemmerSupport.SnowballProgram,n=new function(){function e(){var e,r=f.cursor+3;if(d=f.limit,0<=r&&r<=f.limit){for(a=r;;){if(e=f.cursor,f.in_grouping(w,97,248)){f.cursor=e;break}if(f.cursor=e,e>=f.limit)return;f.cursor++}for(;!f.out_grouping(w,97,248);){if(f.cursor>=f.limit)return;f.cursor++}d=f.cursor,d<a&&(d=a)}}function n(){var e,r;if(f.cursor>=d&&(r=f.limit_backward,f.limit_backward=d,f.ket=f.cursor,e=f.find_among_b(c,32),f.limit_backward=r,e))switch(f.bra=f.cursor,e){case 1:f.slice_del();break;case 2:f.in_grouping_b(p,97,229)&&f.slice_del()}}function t(){var e,r=f.limit-f.cursor;f.cursor>=d&&(e=f.limit_backward,f.limit_backward=d,f.ket=f.cursor,f.find_among_b(l,4)?(f.bra=f.cursor,f.limit_backward=e,f.cursor=f.limit-r,f.cursor>f.limit_backward&&(f.cursor--,f.bra=f.cursor,f.slice_del())):f.limit_backward=e)}function s(){var e,r,i,n=f.limit-f.cursor;if(f.ket=f.cursor,f.eq_s_b(2,"st")&&(f.bra=f.cursor,f.eq_s_b(2,"ig")&&f.slice_del()),f.cursor=f.limit-n,f.cursor>=d&&(r=f.limit_backward,f.limit_backward=d,f.ket=f.cursor,e=f.find_among_b(m,5),f.limit_backward=r,e))switch(f.bra=f.cursor,e){case 1:f.slice_del(),i=f.limit-f.cursor,t(),f.cursor=f.limit-i;break;case 2:f.slice_from("løs")}}function o(){var e;f.cursor>=d&&(e=f.limit_backward,f.limit_backward=d,f.ket=f.cursor,f.out_grouping_b(w,97,248)?(f.bra=f.cursor,u=f.slice_to(u),f.limit_backward=e,f.eq_v_b(u)&&f.slice_del()):f.limit_backward=e)}var a,d,u,c=[new r("hed",-1,1),new r("ethed",0,1),new r("ered",-1,1),new r("e",-1,1),new r("erede",3,1),new r("ende",3,1),new r("erende",5,1),new r("ene",3,1),new r("erne",3,1),new r("ere",3,1),new r("en",-1,1),new r("heden",10,1),new r("eren",10,1),new r("er",-1,1),new r("heder",13,1),new r("erer",13,1),new r("s",-1,2),new r("heds",16,1),new r("es",16,1),new r("endes",18,1),new r("erendes",19,1),new r("enes",18,1),new r("ernes",18,1),new r("eres",18,1),new r("ens",16,1),new r("hedens",24,1),new r("erens",24,1),new r("ers",16,1),new r("ets",16,1),new r("erets",28,1),new r("et",-1,1),new r("eret",30,1)],l=[new r("gd",-1,-1),new r("dt",-1,-1),new r("gt",-1,-1),new r("kt",-1,-1)],m=[new r("ig",-1,1),new r("lig",0,1),new r("elig",1,1),new r("els",-1,1),new r("løst",-1,2)],w=[17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,48,0,128],p=[239,254,42,3,0,0,0,0,0,0,0,0,0,0,0,0,16],f=new i;this.setCurrent=function(e){f.setCurrent(e)},this.getCurrent=function(){return f.getCurrent()},this.stem=function(){var r=f.cursor;return e(),f.limit_backward=r,f.cursor=f.limit,n(),f.cursor=f.limit,t(),f.cursor=f.limit,s(),f.cursor=f.limit,o(),!0}};return function(e){return"function"==typeof e.update?e.update(function(e){return n.setCurrent(e),n.stem(),n.getCurrent()}):(n.setCurrent(e),n.stem(),n.getCurrent())}}(),e.Pipeline.registerFunction(e.da.stemmer,"stemmer-da"),e.da.stopWordFilter=e.generateStopWordFilter("ad af alle alt anden at blev blive bliver da de dem den denne der deres det dette dig din disse dog du efter eller en end er et for fra ham han hans har havde have hende hendes her hos hun hvad hvis hvor i ikke ind jeg jer jo kunne man mange med meget men mig min mine mit mod ned noget nogle nu når og også om op os over på selv sig sin sine sit skal skulle som sådan thi til ud under var vi vil ville vor være været".split(" ")),e.Pipeline.registerFunction(e.da.stopWordFilter,"stopWordFilter-da")}});
|
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|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `German` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.de=function(){this.pipeline.reset(),this.pipeline.add(e.de.trimmer,e.de.stopWordFilter,e.de.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.de.stemmer))},e.de.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.de.trimmer=e.trimmerSupport.generateTrimmer(e.de.wordCharacters),e.Pipeline.registerFunction(e.de.trimmer,"trimmer-de"),e.de.stemmer=function(){var r=e.stemmerSupport.Among,n=e.stemmerSupport.SnowballProgram,i=new function(){function e(e,r,n){return!(!v.eq_s(1,e)||(v.ket=v.cursor,!v.in_grouping(p,97,252)))&&(v.slice_from(r),v.cursor=n,!0)}function i(){for(var r,n,i,s,t=v.cursor;;)if(r=v.cursor,v.bra=r,v.eq_s(1,"ß"))v.ket=v.cursor,v.slice_from("ss");else{if(r>=v.limit)break;v.cursor=r+1}for(v.cursor=t;;)for(n=v.cursor;;){if(i=v.cursor,v.in_grouping(p,97,252)){if(s=v.cursor,v.bra=s,e("u","U",i))break;if(v.cursor=s,e("y","Y",i))break}if(i>=v.limit)return void(v.cursor=n);v.cursor=i+1}}function s(){for(;!v.in_grouping(p,97,252);){if(v.cursor>=v.limit)return!0;v.cursor++}for(;!v.out_grouping(p,97,252);){if(v.cursor>=v.limit)return!0;v.cursor++}return!1}function t(){m=v.limit,l=m;var e=v.cursor+3;0<=e&&e<=v.limit&&(d=e,s()||(m=v.cursor,m<d&&(m=d),s()||(l=v.cursor)))}function o(){for(var e,r;;){if(r=v.cursor,v.bra=r,!(e=v.find_among(h,6)))return;switch(v.ket=v.cursor,e){case 1:v.slice_from("y");break;case 2:case 5:v.slice_from("u");break;case 3:v.slice_from("a");break;case 4:v.slice_from("o");break;case 6:if(v.cursor>=v.limit)return;v.cursor++}}}function c(){return m<=v.cursor}function u(){return l<=v.cursor}function a(){var e,r,n,i,s=v.limit-v.cursor;if(v.ket=v.cursor,(e=v.find_among_b(w,7))&&(v.bra=v.cursor,c()))switch(e){case 1:v.slice_del();break;case 2:v.slice_del(),v.ket=v.cursor,v.eq_s_b(1,"s")&&(v.bra=v.cursor,v.eq_s_b(3,"nis")&&v.slice_del());break;case 3:v.in_grouping_b(g,98,116)&&v.slice_del()}if(v.cursor=v.limit-s,v.ket=v.cursor,(e=v.find_among_b(f,4))&&(v.bra=v.cursor,c()))switch(e){case 1:v.slice_del();break;case 2:if(v.in_grouping_b(k,98,116)){var t=v.cursor-3;v.limit_backward<=t&&t<=v.limit&&(v.cursor=t,v.slice_del())}}if(v.cursor=v.limit-s,v.ket=v.cursor,(e=v.find_among_b(_,8))&&(v.bra=v.cursor,u()))switch(e){case 1:v.slice_del(),v.ket=v.cursor,v.eq_s_b(2,"ig")&&(v.bra=v.cursor,r=v.limit-v.cursor,v.eq_s_b(1,"e")||(v.cursor=v.limit-r,u()&&v.slice_del()));break;case 2:n=v.limit-v.cursor,v.eq_s_b(1,"e")||(v.cursor=v.limit-n,v.slice_del());break;case 3:if(v.slice_del(),v.ket=v.cursor,i=v.limit-v.cursor,!v.eq_s_b(2,"er")&&(v.cursor=v.limit-i,!v.eq_s_b(2,"en")))break;v.bra=v.cursor,c()&&v.slice_del();break;case 4:v.slice_del(),v.ket=v.cursor,e=v.find_among_b(b,2),e&&(v.bra=v.cursor,u()&&1==e&&v.slice_del())}}var d,l,m,h=[new r("",-1,6),new r("U",0,2),new r("Y",0,1),new r("ä",0,3),new r("ö",0,4),new r("ü",0,5)],w=[new r("e",-1,2),new r("em",-1,1),new r("en",-1,2),new r("ern",-1,1),new r("er",-1,1),new r("s",-1,3),new r("es",5,2)],f=[new r("en",-1,1),new r("er",-1,1),new r("st",-1,2),new r("est",2,1)],b=[new r("ig",-1,1),new r("lich",-1,1)],_=[new r("end",-1,1),new r("ig",-1,2),new r("ung",-1,1),new r("lich",-1,3),new r("isch",-1,2),new r("ik",-1,2),new r("heit",-1,3),new r("keit",-1,4)],p=[17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,8,0,32,8],g=[117,30,5],k=[117,30,4],v=new n;this.setCurrent=function(e){v.setCurrent(e)},this.getCurrent=function(){return v.getCurrent()},this.stem=function(){var e=v.cursor;return i(),v.cursor=e,t(),v.limit_backward=e,v.cursor=v.limit,a(),v.cursor=v.limit_backward,o(),!0}};return function(e){return"function"==typeof e.update?e.update(function(e){return i.setCurrent(e),i.stem(),i.getCurrent()}):(i.setCurrent(e),i.stem(),i.getCurrent())}}(),e.Pipeline.registerFunction(e.de.stemmer,"stemmer-de"),e.de.stopWordFilter=e.generateStopWordFilter("aber alle allem allen aller alles als also am an ander andere anderem anderen anderer anderes anderm andern anderr anders auch auf aus bei bin bis bist da damit dann das dasselbe dazu daß dein deine deinem deinen deiner deines dem demselben den denn denselben der derer derselbe derselben des desselben dessen dich die dies diese dieselbe dieselben diesem diesen dieser dieses dir doch dort du durch ein eine einem einen einer eines einig einige einigem einigen einiger einiges einmal er es etwas euch euer eure eurem euren eurer eures für gegen gewesen hab habe haben hat hatte hatten hier hin hinter ich ihm ihn ihnen ihr ihre ihrem ihren ihrer ihres im in indemLine truncated
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Dutch` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");console.warn('[Lunr Languages] Please use the "nl" instead of the "du". The "nl" code is the standard code for Dutch language, and "du" will be removed in the next major versions.'),e.du=function(){this.pipeline.reset(),this.pipeline.add(e.du.trimmer,e.du.stopWordFilter,e.du.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.du.stemmer))},e.du.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.du.trimmer=e.trimmerSupport.generateTrimmer(e.du.wordCharacters),e.Pipeline.registerFunction(e.du.trimmer,"trimmer-du"),e.du.stemmer=function(){var r=e.stemmerSupport.Among,i=e.stemmerSupport.SnowballProgram,n=new function(){function e(){for(var e,r,i,o=C.cursor;;){if(C.bra=C.cursor,e=C.find_among(b,11))switch(C.ket=C.cursor,e){case 1:C.slice_from("a");continue;case 2:C.slice_from("e");continue;case 3:C.slice_from("i");continue;case 4:C.slice_from("o");continue;case 5:C.slice_from("u");continue;case 6:if(C.cursor>=C.limit)break;C.cursor++;continue}break}for(C.cursor=o,C.bra=o,C.eq_s(1,"y")?(C.ket=C.cursor,C.slice_from("Y")):C.cursor=o;;)if(r=C.cursor,C.in_grouping(q,97,232)){if(i=C.cursor,C.bra=i,C.eq_s(1,"i"))C.ket=C.cursor,C.in_grouping(q,97,232)&&(C.slice_from("I"),C.cursor=r);else if(C.cursor=i,C.eq_s(1,"y"))C.ket=C.cursor,C.slice_from("Y"),C.cursor=r;else if(n(r))break}else if(n(r))break}function n(e){return C.cursor=e,e>=C.limit||(C.cursor++,!1)}function o(){_=C.limit,f=_,t()||(_=C.cursor,_<3&&(_=3),t()||(f=C.cursor))}function t(){for(;!C.in_grouping(q,97,232);){if(C.cursor>=C.limit)return!0;C.cursor++}for(;!C.out_grouping(q,97,232);){if(C.cursor>=C.limit)return!0;C.cursor++}return!1}function s(){for(var e;;)if(C.bra=C.cursor,e=C.find_among(p,3))switch(C.ket=C.cursor,e){case 1:C.slice_from("y");break;case 2:C.slice_from("i");break;case 3:if(C.cursor>=C.limit)return;C.cursor++}}function u(){return _<=C.cursor}function c(){return f<=C.cursor}function a(){var e=C.limit-C.cursor;C.find_among_b(g,3)&&(C.cursor=C.limit-e,C.ket=C.cursor,C.cursor>C.limit_backward&&(C.cursor--,C.bra=C.cursor,C.slice_del()))}function l(){var e;w=!1,C.ket=C.cursor,C.eq_s_b(1,"e")&&(C.bra=C.cursor,u()&&(e=C.limit-C.cursor,C.out_grouping_b(q,97,232)&&(C.cursor=C.limit-e,C.slice_del(),w=!0,a())))}function m(){var e;u()&&(e=C.limit-C.cursor,C.out_grouping_b(q,97,232)&&(C.cursor=C.limit-e,C.eq_s_b(3,"gem")||(C.cursor=C.limit-e,C.slice_del(),a())))}function d(){var e,r,i,n,o,t,s=C.limit-C.cursor;if(C.ket=C.cursor,e=C.find_among_b(h,5))switch(C.bra=C.cursor,e){case 1:u()&&C.slice_from("heid");break;case 2:m();break;case 3:u()&&C.out_grouping_b(z,97,232)&&C.slice_del()}if(C.cursor=C.limit-s,l(),C.cursor=C.limit-s,C.ket=C.cursor,C.eq_s_b(4,"heid")&&(C.bra=C.cursor,c()&&(r=C.limit-C.cursor,C.eq_s_b(1,"c")||(C.cursor=C.limit-r,C.slice_del(),C.ket=C.cursor,C.eq_s_b(2,"en")&&(C.bra=C.cursor,m())))),C.cursor=C.limit-s,C.ket=C.cursor,e=C.find_among_b(k,6))switch(C.bra=C.cursor,e){case 1:if(c()){if(C.slice_del(),i=C.limit-C.cursor,C.ket=C.cursor,C.eq_s_b(2,"ig")&&(C.bra=C.cursor,c()&&(n=C.limit-C.cursor,!C.eq_s_b(1,"e")))){C.cursor=C.limit-n,C.slice_del();break}C.cursor=C.limit-i,a()}break;case 2:c()&&(o=C.limit-C.cursor,C.eq_s_b(1,"e")||(C.cursor=C.limit-o,C.slice_del()));break;case 3:c()&&(C.slice_del(),l());break;case 4:c()&&C.slice_del();break;case 5:c()&&w&&C.slice_del()}C.cursor=C.limit-s,C.out_grouping_b(j,73,232)&&(t=C.limit-C.cursor,C.find_among_b(v,4)&&C.out_grouping_b(q,97,232)&&(C.cursor=C.limit-t,C.ket=C.cursor,C.cursor>C.limit_backward&&(C.cursor--,C.bra=C.cursor,C.slice_del())))}var f,_,w,b=[new r("",-1,6),new r("á",0,1),new r("ä",0,1),new r("é",0,2),new r("ë",0,2),new r("í",0,3),new r("ï",0,3),new r("ó",0,4),new r("ö",0,4),new r("ú",0,5),new r("ü",0,5)],p=[new r("",-1,3),new r("I",0,2),new r("Y",0,1)],g=[new r("dd",-1,-1),new r("kk",-1,-1),new r("tt",-1,-1)],h=[new r("ene",-1,2),new r("se",-1,3),new r("en",-1,2),new r("heden",2,1),new r("s",-1,3)],k=[new r("end",-1,1),new r("ig",-1,2),new r("ing",-1,1),new r("lijk",-1,3),new r("baar",-1,4),new r("bar",-1,5)],v=[new r("aa",-1,-1),new r("ee",-1,-1),new r("oo",-1,-1),new r("uu",-1,-1)],q=[17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,128],j=[1,0,0,17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,128],z=[17,67,16,1,0,0,0,0,0,0,0,0,0,0,0,0,128],C=new i;this.setCurrent=function(e){C.setCurrent(e)},this.getCurrent=function(){return C.getCurrent()},this.stem=function(){var r=C.cursor;return e(),C.cursor=r,o(),C.limit_backward=r,C.cursoLine truncated
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,t){"function"==typeof define&&define.amd?define(t):"object"==typeof exports?module.exports=t():t()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.el=function(){this.pipeline.reset(),void 0===this.searchPipeline&&this.pipeline.add(e.el.trimmer,e.el.normilizer),this.pipeline.add(e.el.stopWordFilter,e.el.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.el.stemmer))},e.el.wordCharacters="A-Za-zΑαΒβΓγΔδΕεΖζΗηΘθΙιΚκΛλΜμΝνΞξΟοΠπΡρΣσςΤτΥυΦφΧχΨψΩωΆάΈέΉήΊίΌόΎύΏώΪΐΫΰΐΰ",e.el.trimmer=e.trimmerSupport.generateTrimmer(e.el.wordCharacters),e.Pipeline.registerFunction(e.el.trimmer,"trimmer-el"),e.el.stemmer=function(){function e(e){return s.test(e)}function t(e){return/[ΑΕΗΙΟΥΩ]$/.test(e)}function r(e){return/[ΑΕΗΙΟΩ]$/.test(e)}function n(n){var s=n;if(n.length<3)return s;if(!e(n))return s;if(i.indexOf(n)>=0)return s;var u=new RegExp("(.*)("+Object.keys(l).join("|")+")$"),o=u.exec(s);return null!==o&&(s=o[1]+l[o[2]]),null!==(o=/^(.+?)(ΑΔΕΣ|ΑΔΩΝ)$/.exec(s))&&(s=o[1],/(ΟΚ|ΜΑΜ|ΜΑΝ|ΜΠΑΜΠ|ΠΑΤΕΡ|ΓΙΑΓΙ|ΝΤΑΝΤ|ΚΥΡ|ΘΕΙ|ΠΕΘΕΡ|ΜΟΥΣΑΜ|ΚΑΠΛΑΜ|ΠΑΡ|ΨΑΡ|ΤΖΟΥΡ|ΤΑΜΠΟΥΡ|ΓΑΛΑΤ|ΦΑΦΛΑΤ)$/.test(o[1])||(s+="ΑΔ")),null!==(o=/^(.+?)(ΕΔΕΣ|ΕΔΩΝ)$/.exec(s))&&(s=o[1],/(ΟΠ|ΙΠ|ΕΜΠ|ΥΠ|ΓΗΠ|ΔΑΠ|ΚΡΑΣΠ|ΜΙΛ)$/.test(o[1])&&(s+="ΕΔ")),null!==(o=/^(.+?)(ΟΥΔΕΣ|ΟΥΔΩΝ)$/.exec(s))&&(s=o[1],/(ΑΡΚ|ΚΑΛΙΑΚ|ΠΕΤΑΛ|ΛΙΧ|ΠΛΕΞ|ΣΚ|Σ|ΦΛ|ΦΡ|ΒΕΛ|ΛΟΥΛ|ΧΝ|ΣΠ|ΤΡΑΓ|ΦΕ)$/.test(o[1])&&(s+="ΟΥΔ")),null!==(o=/^(.+?)(ΕΩΣ|ΕΩΝ|ΕΑΣ|ΕΑ)$/.exec(s))&&(s=o[1],/^(Θ|Δ|ΕΛ|ΓΑΛ|Ν|Π|ΙΔ|ΠΑΡ|ΣΤΕΡ|ΟΡΦ|ΑΝΔΡ|ΑΝΤΡ)$/.test(o[1])&&(s+="Ε")),null!==(o=/^(.+?)(ΕΙΟ|ΕΙΟΣ|ΕΙΟΙ|ΕΙΑ|ΕΙΑΣ|ΕΙΕΣ|ΕΙΟΥ|ΕΙΟΥΣ|ΕΙΩΝ)$/.exec(s))&&o[1].length>4&&(s=o[1]),null!==(o=/^(.+?)(ΙΟΥΣ|ΙΑΣ|ΙΕΣ|ΙΟΣ|ΙΟΥ|ΙΟΙ|ΙΩΝ|ΙΟΝ|ΙΑ|ΙΟ)$/.exec(s))&&(s=o[1],(t(s)||s.length<2||/^(ΑΓ|ΑΓΓΕΛ|ΑΓΡ|ΑΕΡ|ΑΘΛ|ΑΚΟΥΣ|ΑΞ|ΑΣ|Β|ΒΙΒΛ|ΒΥΤ|Γ|ΓΙΑΓ|ΓΩΝ|Δ|ΔΑΝ|ΔΗΛ|ΔΗΜ|ΔΟΚΙΜ|ΕΛ|ΖΑΧΑΡ|ΗΛ|ΗΠ|ΙΔ|ΙΣΚ|ΙΣΤ|ΙΟΝ|ΙΩΝ|ΚΙΜΩΛ|ΚΟΛΟΝ|ΚΟΡ|ΚΤΗΡ|ΚΥΡ|ΛΑΓ|ΛΟΓ|ΜΑΓ|ΜΠΑΝ|ΜΠΡ|ΝΑΥΤ|ΝΟΤ|ΟΠΑΛ|ΟΞ|ΟΡ|ΟΣ|ΠΑΝΑΓ|ΠΑΤΡ|ΠΗΛ|ΠΗΝ|ΠΛΑΙΣ|ΠΟΝΤ|ΡΑΔ|ΡΟΔ|ΣΚ|ΣΚΟΡΠ|ΣΟΥΝ|ΣΠΑΝ|ΣΤΑΔ|ΣΥΡ|ΤΗΛ|ΤΙΜ|ΤΟΚ|ΤΟΠ|ΤΡΟΧ|ΦΙΛ|ΦΩΤ|Χ|ΧΙΛ|ΧΡΩΜ|ΧΩΡ)$/.test(o[1]))&&(s+="Ι"),/^(ΠΑΛ)$/.test(o[1])&&(s+="ΑΙ")),null!==(o=/^(.+?)(ΙΚΟΣ|ΙΚΟΝ|ΙΚΕΙΣ|ΙΚΟΙ|ΙΚΕΣ|ΙΚΟΥΣ|ΙΚΗ|ΙΚΗΣ|ΙΚΟ|ΙΚΑ|ΙΚΟΥ|ΙΚΩΝ|ΙΚΩΣ)$/.exec(s))&&(s=o[1],(t(s)||/^(ΑΔ|ΑΛ|ΑΜΑΝ|ΑΜΕΡ|ΑΜΜΟΧΑΛ|ΑΝΗΘ|ΑΝΤΙΔ|ΑΠΛ|ΑΤΤ|ΑΦΡ|ΒΑΣ|ΒΡΩΜ|ΓΕΝ|ΓΕΡ|Δ|ΔΙΚΑΝ|ΔΥΤ|ΕΙΔ|ΕΝΔ|ΕΞΩΔ|ΗΘ|ΘΕΤ|ΚΑΛΛΙΝ|ΚΑΛΠ|ΚΑΤΑΔ|ΚΟΥΖΙΝ|ΚΡ|ΚΩΔ|ΛΟΓ|Μ|ΜΕΡ|ΜΟΝΑΔ|ΜΟΥΛ|ΜΟΥΣ|ΜΠΑΓΙΑΤ|ΜΠΑΝ|ΜΠΟΛ|ΜΠΟΣ|ΜΥΣΤ|Ν|ΝΙΤ|ΞΙΚ|ΟΠΤ|ΠΑΝ|ΠΕΤΣ|ΠΙΚΑΝΤ|ΠΙΤΣ|ΠΛΑΣΤ|ΠΛΙΑΤΣ|ΠΟΝΤ|ΠΟΣΤΕΛΝ|ΠΡΩΤΟΔ|ΣΕΡΤ|ΣΗΜΑΝΤ|ΣΤΑΤ|ΣΥΝΑΔ|ΣΥΝΟΜΗΛ|ΤΕΛ|ΤΕΧΝ|ΤΡΟΠ|ΤΣΑΜ|ΥΠΟΔ|Φ|ΦΙΛΟΝ|ΦΥΛΟΔ|ΦΥΣ|ΧΑΣ)$/.test(o[1])||/(ΦΟΙΝ)$/.test(o[1]))&&(s+="ΙΚ")),"ΑΓΑΜΕ"===s&&(s="ΑΓΑΜ"),null!==(o=/^(.+?)(ΑΓΑΜΕ|ΗΣΑΜΕ|ΟΥΣΑΜΕ|ΗΚΑΜΕ|ΗΘΗΚΑΜΕ)$/.exec(s))&&(s=o[1]),null!==(o=/^(.+?)(ΑΜΕ)$/.exec(s))&&(s=o[1],/^(ΑΝΑΠ|ΑΠΟΘ|ΑΠΟΚ|ΑΠΟΣΤ|ΒΟΥΒ|ΞΕΘ|ΟΥΛ|ΠΕΘ|ΠΙΚΡ|ΠΟΤ|ΣΙΧ|Χ)$/.test(o[1])&&(s+="ΑΜ")),null!==(o=/^(.+?)(ΑΓΑΝΕ|ΗΣΑΝΕ|ΟΥΣΑΝΕ|ΙΟΝΤΑΝΕ|ΙΟΤΑΝΕ|ΙΟΥΝΤΑΝΕ|ΟΝΤΑΝΕ|ΟΤΑΝΕ|ΟΥΝΤΑΝΕ|ΗΚΑΝΕ|ΗΘΗΚΑΝΕ)$/.exec(s))&&(s=o[1],/^(ΤΡ|ΤΣ)$/.test(o[1])&&(s+="ΑΓΑΝ")),null!==(o=/^(.+?)(ΑΝΕ)$/.exec(s))&&(s=o[1],(r(s)||/^(ΒΕΤΕΡ|ΒΟΥΛΚ|ΒΡΑΧΜ|Γ|ΔΡΑΔΟΥΜ|Θ|ΚΑΛΠΟΥΖ|ΚΑΣΤΕΛ|ΚΟΡΜΟΡ|ΛΑΟΠΛ|ΜΩΑΜΕΘ|Μ|ΜΟΥΣΟΥΛΜΑΝ|ΟΥΛ|Π|ΠΕΛΕΚ|ΠΛ|ΠΟΛΙΣ|ΠΟΡΤΟΛ|ΣΑΡΑΚΑΤΣ|ΣΟΥΛΤ|ΤΣΑΡΛΑΤ|ΟΡΦ|ΤΣΙΓΓ|ΤΣΟΠ|ΦΩΤΟΣΤΕΦ|Χ|ΨΥΧΟΠΛ|ΑΓ|ΟΡΦ|ΓΑΛ|ΓΕΡ|ΔΕΚ|ΔΙΠΛ|ΑΜΕΡΙΚΑΝ|ΟΥΡ|ΠΙΘ|ΠΟΥΡΙΤ|Σ|ΖΩΝΤ|ΙΚ|ΚΑΣΤ|ΚΟΠ|ΛΙΧ|ΛΟΥΘΗΡ|ΜΑΙΝΤ|ΜΕΛ|ΣΙΓ|ΣΠ|ΣΤΕΓ|ΤΡΑΓ|ΤΣΑΓ|Φ|ΕΡ|ΑΔΑΠ|ΑΘΙΓΓ|ΑΜΗΧ|ΑΝΙΚ|ΑΝΟΡΓ|ΑΠΗΓ|ΑΠΙΘ|ΑΤΣΙΓΓ|ΒΑΣ|ΒΑΣΚ|ΒΑΘΥΓΑΛ|ΒΙΟΜΗΧ|ΒΡΑΧΥΚ|ΔΙΑΤ|ΔΙΑΦ|ΕΝΟΡΓ|ΘΥΣ|ΚΑΠΝΟΒΙΟΜΗΧ|ΚΑΤLine truncated
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Spanish` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,s){"function"==typeof define&&define.amd?define(s):"object"==typeof exports?module.exports=s():s()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.es=function(){this.pipeline.reset(),this.pipeline.add(e.es.trimmer,e.es.stopWordFilter,e.es.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.es.stemmer))},e.es.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.es.trimmer=e.trimmerSupport.generateTrimmer(e.es.wordCharacters),e.Pipeline.registerFunction(e.es.trimmer,"trimmer-es"),e.es.stemmer=function(){var s=e.stemmerSupport.Among,r=e.stemmerSupport.SnowballProgram,n=new function(){function e(){if(A.out_grouping(x,97,252)){for(;!A.in_grouping(x,97,252);){if(A.cursor>=A.limit)return!0;A.cursor++}return!1}return!0}function n(){if(A.in_grouping(x,97,252)){var s=A.cursor;if(e()){if(A.cursor=s,!A.in_grouping(x,97,252))return!0;for(;!A.out_grouping(x,97,252);){if(A.cursor>=A.limit)return!0;A.cursor++}}return!1}return!0}function i(){var s,r=A.cursor;if(n()){if(A.cursor=r,!A.out_grouping(x,97,252))return;if(s=A.cursor,e()){if(A.cursor=s,!A.in_grouping(x,97,252)||A.cursor>=A.limit)return;A.cursor++}}g=A.cursor}function a(){for(;!A.in_grouping(x,97,252);){if(A.cursor>=A.limit)return!1;A.cursor++}for(;!A.out_grouping(x,97,252);){if(A.cursor>=A.limit)return!1;A.cursor++}return!0}function t(){var e=A.cursor;g=A.limit,p=g,v=g,i(),A.cursor=e,a()&&(p=A.cursor,a()&&(v=A.cursor))}function o(){for(var e;;){if(A.bra=A.cursor,e=A.find_among(k,6))switch(A.ket=A.cursor,e){case 1:A.slice_from("a");continue;case 2:A.slice_from("e");continue;case 3:A.slice_from("i");continue;case 4:A.slice_from("o");continue;case 5:A.slice_from("u");continue;case 6:if(A.cursor>=A.limit)break;A.cursor++;continue}break}}function u(){return g<=A.cursor}function w(){return p<=A.cursor}function c(){return v<=A.cursor}function m(){var e;if(A.ket=A.cursor,A.find_among_b(y,13)&&(A.bra=A.cursor,(e=A.find_among_b(q,11))&&u()))switch(e){case 1:A.bra=A.cursor,A.slice_from("iendo");break;case 2:A.bra=A.cursor,A.slice_from("ando");break;case 3:A.bra=A.cursor,A.slice_from("ar");break;case 4:A.bra=A.cursor,A.slice_from("er");break;case 5:A.bra=A.cursor,A.slice_from("ir");break;case 6:A.slice_del();break;case 7:A.eq_s_b(1,"u")&&A.slice_del()}}function l(e,s){if(!c())return!0;A.slice_del(),A.ket=A.cursor;var r=A.find_among_b(e,s);return r&&(A.bra=A.cursor,1==r&&c()&&A.slice_del()),!1}function d(e){return!c()||(A.slice_del(),A.ket=A.cursor,A.eq_s_b(2,e)&&(A.bra=A.cursor,c()&&A.slice_del()),!1)}function b(){var e;if(A.ket=A.cursor,e=A.find_among_b(S,46)){switch(A.bra=A.cursor,e){case 1:if(!c())return!1;A.slice_del();break;case 2:if(d("ic"))return!1;break;case 3:if(!c())return!1;A.slice_from("log");break;case 4:if(!c())return!1;A.slice_from("u");break;case 5:if(!c())return!1;A.slice_from("ente");break;case 6:if(!w())return!1;A.slice_del(),A.ket=A.cursor,e=A.find_among_b(C,4),e&&(A.bra=A.cursor,c()&&(A.slice_del(),1==e&&(A.ket=A.cursor,A.eq_s_b(2,"at")&&(A.bra=A.cursor,c()&&A.slice_del()))));break;case 7:if(l(P,3))return!1;break;case 8:if(l(F,3))return!1;break;case 9:if(d("at"))return!1}return!0}return!1}function f(){var e,s;if(A.cursor>=g&&(s=A.limit_backward,A.limit_backward=g,A.ket=A.cursor,e=A.find_among_b(W,12),A.limit_backward=s,e)){if(A.bra=A.cursor,1==e){if(!A.eq_s_b(1,"u"))return!1;A.slice_del()}return!0}return!1}function _(){var e,s,r,n;if(A.cursor>=g&&(s=A.limit_backward,A.limit_backward=g,A.ket=A.cursor,e=A.find_among_b(L,96),A.limit_backward=s,e))switch(A.bra=A.cursor,e){case 1:r=A.limit-A.cursor,A.eq_s_b(1,"u")?(n=A.limit-A.cursor,A.eq_s_b(1,"g")?A.cursor=A.limit-n:A.cursor=A.limit-r):A.cursor=A.limit-r,A.bra=A.cursor;case 2:A.slice_del()}}function h(){var e,s;if(A.ket=A.cursor,e=A.find_among_b(z,8))switch(A.bra=A.cursor,e){case 1:u()&&A.slice_del();break;case 2:u()&&(A.slice_del(),A.ket=A.cursor,A.eq_s_b(1,"u")&&(A.bra=A.cursor,s=A.limit-A.cursor,A.eq_s_b(1,"g")&&(A.cursor=A.limit-s,u()&&A.slice_del())))}}var v,p,g,k=[new s("",-1,6),new s("á",0,1),new s("é",0,2),new s("í",0,3),new s("ó",0,4),new s("ú",0,5)],y=[new s("la",-1,-1),new s("sela",0,-1),new s("le",-1,-1),new s("me",-1,-1),new s("se",-1,-1),new s("lo",-1,-1),new s("selo",5,-1),new s("las",-1,-1),new s("selas",7,-1),new s("les",-1,-1),new s("los",-1,-1),new s("selos",10,-1),new s("nos",-1,-1)],q=[new s("ando",-1,6),new s("iendo",-1,6),new s("yendo",-1,7),new s("ándo",-1,2),new s("iéndo",-1,1),new s("ar",-1,6),new s("er",-1,6),new s("ir",-1,6),new s("ár",-1,3),new s("ér",-1,4),new s("ír",-1,5)],C=[new s("ic",-1,-1),new s("ad",-1,-1),new s("os",-1,-1),new s("iLine truncated
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Finnish` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(i,e){"function"==typeof define&&define.amd?define(e):"object"==typeof exports?module.exports=e():e()(i.lunr)}(this,function(){return function(i){if(void 0===i)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===i.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");i.fi=function(){this.pipeline.reset(),this.pipeline.add(i.fi.trimmer,i.fi.stopWordFilter,i.fi.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(i.fi.stemmer))},i.fi.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",i.fi.trimmer=i.trimmerSupport.generateTrimmer(i.fi.wordCharacters),i.Pipeline.registerFunction(i.fi.trimmer,"trimmer-fi"),i.fi.stemmer=function(){var e=i.stemmerSupport.Among,r=i.stemmerSupport.SnowballProgram,n=new function(){function i(){f=A.limit,d=f,n()||(f=A.cursor,n()||(d=A.cursor))}function n(){for(var i;;){if(i=A.cursor,A.in_grouping(W,97,246))break;if(A.cursor=i,i>=A.limit)return!0;A.cursor++}for(A.cursor=i;!A.out_grouping(W,97,246);){if(A.cursor>=A.limit)return!0;A.cursor++}return!1}function t(){return d<=A.cursor}function s(){var i,e;if(A.cursor>=f)if(e=A.limit_backward,A.limit_backward=f,A.ket=A.cursor,i=A.find_among_b(h,10)){switch(A.bra=A.cursor,A.limit_backward=e,i){case 1:if(!A.in_grouping_b(x,97,246))return;break;case 2:if(!t())return}A.slice_del()}else A.limit_backward=e}function o(){var i,e,r;if(A.cursor>=f)if(e=A.limit_backward,A.limit_backward=f,A.ket=A.cursor,i=A.find_among_b(v,9))switch(A.bra=A.cursor,A.limit_backward=e,i){case 1:r=A.limit-A.cursor,A.eq_s_b(1,"k")||(A.cursor=A.limit-r,A.slice_del());break;case 2:A.slice_del(),A.ket=A.cursor,A.eq_s_b(3,"kse")&&(A.bra=A.cursor,A.slice_from("ksi"));break;case 3:A.slice_del();break;case 4:A.find_among_b(p,6)&&A.slice_del();break;case 5:A.find_among_b(g,6)&&A.slice_del();break;case 6:A.find_among_b(j,2)&&A.slice_del()}else A.limit_backward=e}function l(){return A.find_among_b(q,7)}function a(){return A.eq_s_b(1,"i")&&A.in_grouping_b(L,97,246)}function u(){var i,e,r;if(A.cursor>=f)if(e=A.limit_backward,A.limit_backward=f,A.ket=A.cursor,i=A.find_among_b(C,30)){switch(A.bra=A.cursor,A.limit_backward=e,i){case 1:if(!A.eq_s_b(1,"a"))return;break;case 2:case 9:if(!A.eq_s_b(1,"e"))return;break;case 3:if(!A.eq_s_b(1,"i"))return;break;case 4:if(!A.eq_s_b(1,"o"))return;break;case 5:if(!A.eq_s_b(1,"ä"))return;break;case 6:if(!A.eq_s_b(1,"ö"))return;break;case 7:if(r=A.limit-A.cursor,!l()&&(A.cursor=A.limit-r,!A.eq_s_b(2,"ie"))){A.cursor=A.limit-r;break}if(A.cursor=A.limit-r,A.cursor<=A.limit_backward){A.cursor=A.limit-r;break}A.cursor--,A.bra=A.cursor;break;case 8:if(!A.in_grouping_b(W,97,246)||!A.out_grouping_b(W,97,246))return}A.slice_del(),k=!0}else A.limit_backward=e}function c(){var i,e,r;if(A.cursor>=d)if(e=A.limit_backward,A.limit_backward=d,A.ket=A.cursor,i=A.find_among_b(P,14)){if(A.bra=A.cursor,A.limit_backward=e,1==i){if(r=A.limit-A.cursor,A.eq_s_b(2,"po"))return;A.cursor=A.limit-r}A.slice_del()}else A.limit_backward=e}function m(){var i;A.cursor>=f&&(i=A.limit_backward,A.limit_backward=f,A.ket=A.cursor,A.find_among_b(F,2)?(A.bra=A.cursor,A.limit_backward=i,A.slice_del()):A.limit_backward=i)}function w(){var i,e,r,n,t,s;if(A.cursor>=f){if(e=A.limit_backward,A.limit_backward=f,A.ket=A.cursor,A.eq_s_b(1,"t")&&(A.bra=A.cursor,r=A.limit-A.cursor,A.in_grouping_b(W,97,246)&&(A.cursor=A.limit-r,A.slice_del(),A.limit_backward=e,n=A.limit-A.cursor,A.cursor>=d&&(A.cursor=d,t=A.limit_backward,A.limit_backward=A.cursor,A.cursor=A.limit-n,A.ket=A.cursor,i=A.find_among_b(S,2))))){if(A.bra=A.cursor,A.limit_backward=t,1==i){if(s=A.limit-A.cursor,A.eq_s_b(2,"po"))return;A.cursor=A.limit-s}return void A.slice_del()}A.limit_backward=e}}function _(){var i,e,r,n;if(A.cursor>=f){for(i=A.limit_backward,A.limit_backward=f,e=A.limit-A.cursor,l()&&(A.cursor=A.limit-e,A.ket=A.cursor,A.cursor>A.limit_backward&&(A.cursor--,A.bra=A.cursor,A.slice_del())),A.cursor=A.limit-e,A.ket=A.cursor,A.in_grouping_b(y,97,228)&&(A.bra=A.cursor,A.out_grouping_b(W,97,246)&&A.slice_del()),A.cursor=A.limit-e,A.ket=A.cursor,A.eq_s_b(1,"j")&&(A.bra=A.cursor,r=A.limit-A.cursor,A.eq_s_b(1,"o")?A.slice_del():(A.cursor=A.limit-r,A.eq_s_b(1,"u")&&A.slice_del())),A.cursor=A.limit-e,A.ket=A.cursor,A.eq_s_b(1,"o")&&(A.bra=A.cursor,A.eq_s_b(1,"j")&&A.slice_del()),A.cursor=A.limit-e,A.limit_backward=i;;){if(n=A.limit-A.cursor,A.out_grouping_b(W,97,246)){A.cursor=A.limit-n;break}if(A.cursor=A.limit-n,A.cursor<=A.limit_backward)return;A.cursor--}A.ket=A.cursor,A.cursor>A.limit_backward&&(A.cursor--,A.bra=A.cursor,b=A.slice_to(),A.eq_v_b(b)&&A.slice_del())}}var k,b,d,f,h=[new e("pa",-1,1),new e("sti",-1,2),new e("kaan",-1,1),new e("han",-1,1),new e("kin",-1,1),new e("hän",-1,1),new e("kään",-1,1),new e("ko",-1,Line truncated
|
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|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `French` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.fr=function(){this.pipeline.reset(),this.pipeline.add(e.fr.trimmer,e.fr.stopWordFilter,e.fr.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.fr.stemmer))},e.fr.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.fr.trimmer=e.trimmerSupport.generateTrimmer(e.fr.wordCharacters),e.Pipeline.registerFunction(e.fr.trimmer,"trimmer-fr"),e.fr.stemmer=function(){var r=e.stemmerSupport.Among,s=e.stemmerSupport.SnowballProgram,i=new function(){function e(e,r,s){return!(!W.eq_s(1,e)||(W.ket=W.cursor,!W.in_grouping(F,97,251)))&&(W.slice_from(r),W.cursor=s,!0)}function i(e,r,s){return!!W.eq_s(1,e)&&(W.ket=W.cursor,W.slice_from(r),W.cursor=s,!0)}function n(){for(var r,s;;){if(r=W.cursor,W.in_grouping(F,97,251)){if(W.bra=W.cursor,s=W.cursor,e("u","U",r))continue;if(W.cursor=s,e("i","I",r))continue;if(W.cursor=s,i("y","Y",r))continue}if(W.cursor=r,W.bra=r,!e("y","Y",r)){if(W.cursor=r,W.eq_s(1,"q")&&(W.bra=W.cursor,i("u","U",r)))continue;if(W.cursor=r,r>=W.limit)return;W.cursor++}}}function t(){for(;!W.in_grouping(F,97,251);){if(W.cursor>=W.limit)return!0;W.cursor++}for(;!W.out_grouping(F,97,251);){if(W.cursor>=W.limit)return!0;W.cursor++}return!1}function u(){var e=W.cursor;if(q=W.limit,g=q,p=q,W.in_grouping(F,97,251)&&W.in_grouping(F,97,251)&&W.cursor<W.limit)W.cursor++;else if(W.cursor=e,!W.find_among(v,3)){W.cursor=e;do{if(W.cursor>=W.limit){W.cursor=q;break}W.cursor++}while(!W.in_grouping(F,97,251))}q=W.cursor,W.cursor=e,t()||(g=W.cursor,t()||(p=W.cursor))}function o(){for(var e,r;;){if(r=W.cursor,W.bra=r,!(e=W.find_among(h,4)))break;switch(W.ket=W.cursor,e){case 1:W.slice_from("i");break;case 2:W.slice_from("u");break;case 3:W.slice_from("y");break;case 4:if(W.cursor>=W.limit)return;W.cursor++}}}function c(){return q<=W.cursor}function a(){return g<=W.cursor}function l(){return p<=W.cursor}function w(){var e,r;if(W.ket=W.cursor,e=W.find_among_b(C,43)){switch(W.bra=W.cursor,e){case 1:if(!l())return!1;W.slice_del();break;case 2:if(!l())return!1;W.slice_del(),W.ket=W.cursor,W.eq_s_b(2,"ic")&&(W.bra=W.cursor,l()?W.slice_del():W.slice_from("iqU"));break;case 3:if(!l())return!1;W.slice_from("log");break;case 4:if(!l())return!1;W.slice_from("u");break;case 5:if(!l())return!1;W.slice_from("ent");break;case 6:if(!c())return!1;if(W.slice_del(),W.ket=W.cursor,e=W.find_among_b(z,6))switch(W.bra=W.cursor,e){case 1:l()&&(W.slice_del(),W.ket=W.cursor,W.eq_s_b(2,"at")&&(W.bra=W.cursor,l()&&W.slice_del()));break;case 2:l()?W.slice_del():a()&&W.slice_from("eux");break;case 3:l()&&W.slice_del();break;case 4:c()&&W.slice_from("i")}break;case 7:if(!l())return!1;if(W.slice_del(),W.ket=W.cursor,e=W.find_among_b(y,3))switch(W.bra=W.cursor,e){case 1:l()?W.slice_del():W.slice_from("abl");break;case 2:l()?W.slice_del():W.slice_from("iqU");break;case 3:l()&&W.slice_del()}break;case 8:if(!l())return!1;if(W.slice_del(),W.ket=W.cursor,W.eq_s_b(2,"at")&&(W.bra=W.cursor,l()&&(W.slice_del(),W.ket=W.cursor,W.eq_s_b(2,"ic")))){W.bra=W.cursor,l()?W.slice_del():W.slice_from("iqU");break}break;case 9:W.slice_from("eau");break;case 10:if(!a())return!1;W.slice_from("al");break;case 11:if(l())W.slice_del();else{if(!a())return!1;W.slice_from("eux")}break;case 12:if(!a()||!W.out_grouping_b(F,97,251))return!1;W.slice_del();break;case 13:return c()&&W.slice_from("ant"),!1;case 14:return c()&&W.slice_from("ent"),!1;case 15:return r=W.limit-W.cursor,W.in_grouping_b(F,97,251)&&c()&&(W.cursor=W.limit-r,W.slice_del()),!1}return!0}return!1}function f(){var e,r;if(W.cursor<q)return!1;if(r=W.limit_backward,W.limit_backward=q,W.ket=W.cursor,!(e=W.find_among_b(x,35)))return W.limit_backward=r,!1;if(W.bra=W.cursor,1==e){if(!W.out_grouping_b(F,97,251))return W.limit_backward=r,!1;W.slice_del()}return W.limit_backward=r,!0}function m(){var e,r,s;if(W.cursor<q)return!1;if(r=W.limit_backward,W.limit_backward=q,W.ket=W.cursor,!(e=W.find_among_b(I,38)))return W.limit_backward=r,!1;switch(W.bra=W.cursor,e){case 1:if(!l())return W.limit_backward=r,!1;W.slice_del();break;case 2:W.slice_del();break;case 3:W.slice_del(),s=W.limit-W.cursor,W.ket=W.cursor,W.eq_s_b(1,"e")?(W.bra=W.cursor,W.slice_del()):W.cursor=W.limit-s}return W.limit_backward=r,!0}function _(){var e,r,s,i,n=W.limit-W.cursor;if(W.ket=W.cursor,W.eq_s_b(1,"s")?(W.bra=W.cursor,r=W.limit-W.cursor,W.out_grouping_b(S,97,232)?(W.cursor=W.limit-r,W.slice_del()):W.cursor=W.limit-n):W.cursor=W.limit-n,W.cursor>=q){if(s=W.limit_backward,W.limit_backwarLine truncated
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.he=function(){this.pipeline.reset(),this.pipeline.add(e.he.trimmer,e.he.stopWordFilter,e.he.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.he.stemmer))},e.he.wordCharacters="֑-״א-תa-zA-Za-zA-Z0-90-9",e.he.trimmer=e.trimmerSupport.generateTrimmer(e.he.wordCharacters),e.Pipeline.registerFunction(e.he.trimmer,"trimmer-he"),e.he.stemmer=function(){var e=this;return e.result=!1,e.preRemoved=!1,e.sufRemoved=!1,e.pre={pre1:"ה ו י ת",pre2:"ב כ ל מ ש כש",pre3:"הב הכ הל המ הש בש לכ",pre4:"וב וכ ול ומ וש",pre5:"מה שה כל",pre6:"מב מכ מל ממ מש",pre7:"בה בו בי בת כה כו כי כת לה לו לי לת",pre8:"ובה ובו ובי ובת וכה וכו וכי וכת ולה ולו ולי ולת"},e.suf={suf1:"ך כ ם ן נ",suf2:"ים ות וך וכ ום ון ונ הם הן יכ יך ינ ים",suf3:"תי תך תכ תם תן תנ",suf4:"ותי ותך ותכ ותם ותן ותנ",suf5:"נו כם כן הם הן",suf6:"ונו וכם וכן והם והן",suf7:"תכם תכן תנו תהם תהן",suf8:"הוא היא הם הן אני אתה את אנו אתם אתן",suf9:"ני נו כי כו כם כן תי תך תכ תם תן",suf10:"י ך כ ם ן נ ת"},e.patterns=JSON.parse('{"hebrewPatterns": [{"pt1": [{"c": "ה", "l": 0}]}, {"pt2": [{"c": "ו", "l": 0}]}, {"pt3": [{"c": "י", "l": 0}]}, {"pt4": [{"c": "ת", "l": 0}]}, {"pt5": [{"c": "מ", "l": 0}]}, {"pt6": [{"c": "ל", "l": 0}]}, {"pt7": [{"c": "ב", "l": 0}]}, {"pt8": [{"c": "כ", "l": 0}]}, {"pt9": [{"c": "ש", "l": 0}]}, {"pt10": [{"c": "כש", "l": 0}]}, {"pt11": [{"c": "בה", "l": 0}]}, {"pt12": [{"c": "וב", "l": 0}]}, {"pt13": [{"c": "וכ", "l": 0}]}, {"pt14": [{"c": "ול", "l": 0}]}, {"pt15": [{"c": "ומ", "l": 0}]}, {"pt16": [{"c": "וש", "l": 0}]}, {"pt17": [{"c": "הב", "l": 0}]}, {"pt18": [{"c": "הכ", "l": 0}]}, {"pt19": [{"c": "הל", "l": 0}]}, {"pt20": [{"c": "המ", "l": 0}]}, {"pt21": [{"c": "הש", "l": 0}]}, {"pt22": [{"c": "מה", "l": 0}]}, {"pt23": [{"c": "שה", "l": 0}]}, {"pt24": [{"c": "כל", "l": 0}]}]}'),e.execArray=["cleanWord","removeDiacritics","removeStopWords","normalizeHebrewCharacters"],e.stem=function(){var r=0;for(e.result=!1,e.preRemoved=!1,e.sufRemoved=!1;r<e.execArray.length&&1!=e.result;)e.result=e[e.execArray[r]](),r++},e.setCurrent=function(r){e.word=r},e.getCurrent=function(){return e.word},e.cleanWord=function(){return!!new RegExp("[^֑-״א-ת]").test("")},e.removeDiacritics=function(){var r=new RegExp("[ְ-ֿ]","g");return e.word=e.word.replace(r,""),!1},e.removeStopWords=function(){if("אבל או אולי אותו אותי אותך אותם אותן אותנו אז אחר אחרות אחרי אחריכן אחרים אחרת אי איזה איך אין איפה אל אלה אלו אם אנחנו אני אף אפשר את אתה אתכם אתכן אתם אתן באיזה באיזו בגלל בין בלבד בעבור בעזרת בכל בכן בלי במידה במקום שבו ברוב בשביל בשעה ש בתוך גם דרך הוא היא היה היי היכן היתה היתי הם הן הנה הסיבה שבגללה הרי ואילו ואת זאת זה זות יהיה יוכל יוכלו יותר מדי יכול יכולה יכולות יכולים יכל יכלה יכלו יש כאן כאשר כולם כולן כזה כי כיצד כך כל כלל כמו כן כפי כש לא לאו לאיזותך לאן לבין לה להיות להם להן לו לזה לזות לי לך לכם לכן למה למעלה למעלה מ למטה למטה מ למעט למקום שבו למרות לנו לעבר לעיכן לפיכך לפני מאד מאחורי מאיזו סיבה מאין מאיפה מבלי מבעד מדוע מה מהיכן מול מחוץ מי מידע מכאן מכל מכן מלבד מן מנין מסוגל מעט מעטים מעל מצד מקום בו מתחת מתי נגד נגר נו עד עז על עלי עליו עליה עליהם עליך עלינו עם עצמה עצמהם עצמהן עצמו עצמי עצמם עצמן עצמנו פה רק שוב של שלה שלהם שלהן שלו שלי שלך שלכה שלכם שלכן שלנו שם תהיה תחת".split(" ").indexOf(e.word)>=0)return!0},e.normalizeHebrewCharacters=function(){return e.word=e.word.replace("ך","כ"),e.word=e.word.replace("ם","מ"),e.word=e.word.replace("ן","נ"),e.word=e.word.replace("ף","פ"),e.word=e.word.replace("ץ","צ"),!1},function(r){return"function"==typeof r.update?r.update(function(r){return e.setLine truncated
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.hi=function(){this.pipeline.reset(),this.pipeline.add(e.hi.trimmer,e.hi.stopWordFilter,e.hi.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.hi.stemmer))},e.hi.wordCharacters="ऀ-ःऄ-एऐ-टठ-यर-िी-ॏॐ-य़ॠ-९॰-ॿa-zA-Za-zA-Z0-90-9",e.hi.trimmer=e.trimmerSupport.generateTrimmer(e.hi.wordCharacters),e.Pipeline.registerFunction(e.hi.trimmer,"trimmer-hi"),e.hi.stopWordFilter=e.generateStopWordFilter("अत अपना अपनी अपने अभी अंदर आदि आप इत्यादि इन इनका इन्हीं इन्हें इन्हों इस इसका इसकी इसके इसमें इसी इसे उन उनका उनकी उनके उनको उन्हीं उन्हें उन्हों उस उसके उसी उसे एक एवं एस ऐसे और कई कर करता करते करना करने करें कहते कहा का काफ़ी कि कितना किन्हें किन्हों किया किर किस किसी किसे की कुछ कुल के को कोई कौन कौनसा गया घर जब जहाँ जा जितना जिन जिन्हें जिन्हों जिस जिसे जीधर जैसा जैसे जो तक तब तरह तिन तिन्हें तिन्हों तिस तिसे तो था थी थे दबारा दिया दुसरा दूसरे दो द्वारा न नके नहीं ना निहायत नीचे ने पर पहले पूरा पे फिर बनी बही बहुत बाद बाला बिलकुल भी भीतर मगर मानो मे में यदि यह यहाँ यही या यिह ये रखें रहा रहे ऱ्वासा लिए लिये लेकिन व वग़ैरह वर्ग वह वहाँ वहीं वाले वुह वे वो सकता सकते सबसे सभी साथ साबुत साभ सारा से सो संग ही हुआ हुई हुए है हैं हो होता होती होते होना होने".split(" ")),e.hi.stemmer=function(){return function(e){return"function"==typeof e.update?e.update(function(e){return e}):e}}();var r=e.wordcut;r.init(),e.hi.tokenizer=function(i){if(!arguments.length||null==i||void 0==i)return[];if(Array.isArray(i))return i.map(function(r){return isLunr2?new e.Token(r.toLowerCase()):r.toLowerCase()});var t=i.toString().toLowerCase().replace(/^\s+/,"");return r.cut(t).split("|")},e.Pipeline.registerFunction(e.hi.stemmer,"stemmer-hi"),e.Pipeline.registerFunction(e.hi.stopWordFilter,"stopWordFilter-hi")}});
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Hungarian` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,n){"function"==typeof define&&define.amd?define(n):"object"==typeof exports?module.exports=n():n()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.hu=function(){this.pipeline.reset(),this.pipeline.add(e.hu.trimmer,e.hu.stopWordFilter,e.hu.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.hu.stemmer))},e.hu.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.hu.trimmer=e.trimmerSupport.generateTrimmer(e.hu.wordCharacters),e.Pipeline.registerFunction(e.hu.trimmer,"trimmer-hu"),e.hu.stemmer=function(){var n=e.stemmerSupport.Among,r=e.stemmerSupport.SnowballProgram,i=new function(){function e(){var e,n=L.cursor;if(d=L.limit,L.in_grouping(W,97,252))for(;;){if(e=L.cursor,L.out_grouping(W,97,252))return L.cursor=e,L.find_among(g,8)||(L.cursor=e,e<L.limit&&L.cursor++),void(d=L.cursor);if(L.cursor=e,e>=L.limit)return void(d=e);L.cursor++}if(L.cursor=n,L.out_grouping(W,97,252)){for(;!L.in_grouping(W,97,252);){if(L.cursor>=L.limit)return;L.cursor++}d=L.cursor}}function i(){return d<=L.cursor}function a(){var e;if(L.ket=L.cursor,(e=L.find_among_b(h,2))&&(L.bra=L.cursor,i()))switch(e){case 1:L.slice_from("a");break;case 2:L.slice_from("e")}}function t(){var e=L.limit-L.cursor;return!!L.find_among_b(p,23)&&(L.cursor=L.limit-e,!0)}function s(){if(L.cursor>L.limit_backward){L.cursor--,L.ket=L.cursor;var e=L.cursor-1;L.limit_backward<=e&&e<=L.limit&&(L.cursor=e,L.bra=e,L.slice_del())}}function c(){var e;if(L.ket=L.cursor,(e=L.find_among_b(_,2))&&(L.bra=L.cursor,i())){if((1==e||2==e)&&!t())return;L.slice_del(),s()}}function o(){L.ket=L.cursor,L.find_among_b(v,44)&&(L.bra=L.cursor,i()&&(L.slice_del(),a()))}function w(){var e;if(L.ket=L.cursor,(e=L.find_among_b(z,3))&&(L.bra=L.cursor,i()))switch(e){case 1:L.slice_from("e");break;case 2:case 3:L.slice_from("a")}}function l(){var e;if(L.ket=L.cursor,(e=L.find_among_b(y,6))&&(L.bra=L.cursor,i()))switch(e){case 1:case 2:L.slice_del();break;case 3:L.slice_from("a");break;case 4:L.slice_from("e")}}function u(){var e;if(L.ket=L.cursor,(e=L.find_among_b(j,2))&&(L.bra=L.cursor,i())){if((1==e||2==e)&&!t())return;L.slice_del(),s()}}function m(){var e;if(L.ket=L.cursor,(e=L.find_among_b(C,7))&&(L.bra=L.cursor,i()))switch(e){case 1:L.slice_from("a");break;case 2:L.slice_from("e");break;case 3:case 4:case 5:case 6:case 7:L.slice_del()}}function k(){var e;if(L.ket=L.cursor,(e=L.find_among_b(P,12))&&(L.bra=L.cursor,i()))switch(e){case 1:case 4:case 7:case 9:L.slice_del();break;case 2:case 5:case 8:L.slice_from("e");break;case 3:case 6:L.slice_from("a")}}function f(){var e;if(L.ket=L.cursor,(e=L.find_among_b(F,31))&&(L.bra=L.cursor,i()))switch(e){case 1:case 4:case 7:case 8:case 9:case 12:case 13:case 16:case 17:case 18:L.slice_del();break;case 2:case 5:case 10:case 14:case 19:L.slice_from("a");break;case 3:case 6:case 11:case 15:case 20:L.slice_from("e")}}function b(){var e;if(L.ket=L.cursor,(e=L.find_among_b(S,42))&&(L.bra=L.cursor,i()))switch(e){case 1:case 4:case 5:case 6:case 9:case 10:case 11:case 14:case 15:case 16:case 17:case 20:case 21:case 24:case 25:case 26:case 29:L.slice_del();break;case 2:case 7:case 12:case 18:case 22:case 27:L.slice_from("a");break;case 3:case 8:case 13:case 19:case 23:case 28:L.slice_from("e")}}var d,g=[new n("cs",-1,-1),new n("dzs",-1,-1),new n("gy",-1,-1),new n("ly",-1,-1),new n("ny",-1,-1),new n("sz",-1,-1),new n("ty",-1,-1),new n("zs",-1,-1)],h=[new n("á",-1,1),new n("é",-1,2)],p=[new n("bb",-1,-1),new n("cc",-1,-1),new n("dd",-1,-1),new n("ff",-1,-1),new n("gg",-1,-1),new n("jj",-1,-1),new n("kk",-1,-1),new n("ll",-1,-1),new n("mm",-1,-1),new n("nn",-1,-1),new n("pp",-1,-1),new n("rr",-1,-1),new n("ccs",-1,-1),new n("ss",-1,-1),new n("zzs",-1,-1),new n("tt",-1,-1),new n("vv",-1,-1),new n("ggy",-1,-1),new n("lly",-1,-1),new n("nny",-1,-1),new n("tty",-1,-1),new n("ssz",-1,-1),new n("zz",-1,-1)],_=[new n("al",-1,1),new n("el",-1,2)],v=[new n("ba",-1,-1),new n("ra",-1,-1),new n("be",-1,-1),new n("re",-1,-1),new n("ig",-1,-1),new n("nak",-1,-1),new n("nek",-1,-1),new n("val",-1,-1),new n("vel",-1,-1),new n("ul",-1,-1),new n("nál",-1,-1),new n("nél",-1,-1),new n("ból",-1,-1),new n("ról",-1,-1),new n("tól",-1,-1),new n("bõl",-1,-1),new n("rõl",-1,-1),new n("tõl",-1,-1),new n("ül",-1,-1),new n("n",-1,-1),new n("an",19,-1),new n("ban",20,-1),new n("en",19,-1),new n("ben",22,-1),new n("képpen",22,-1),new n("on",19,-1),new n("ön",19,-1),new n("képp",-1,-1),new n("kor",-1,-1),new n("t",-1,-1),new n("at",29,-1),new n("et",29,-1),new n("ként",29,-1),new n("anként",32,-1),new n("enként",32,-1),new n("onként",32,-1),Line truncated
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.hy=function(){this.pipeline.reset(),this.pipeline.add(e.hy.trimmer,e.hy.stopWordFilter)},e.hy.wordCharacters="[A-Za-z-֏ff-ﭏ]",e.hy.trimmer=e.trimmerSupport.generateTrimmer(e.hy.wordCharacters),e.Pipeline.registerFunction(e.hy.trimmer,"trimmer-hy"),e.hy.stopWordFilter=e.generateStopWordFilter("դու և եք էիր էիք հետո նաև նրանք որը վրա է որ պիտի են այս մեջ ն իր ու ի այդ որոնք այն կամ էր մի ես համար այլ իսկ էին ենք հետ ին թ էինք մենք նրա նա դուք եմ էի ըստ որպես ում".split(" ")),e.Pipeline.registerFunction(e.hy.stopWordFilter,"stopWordFilter-hy"),e.hy.stemmer=function(){return function(e){return"function"==typeof e.update?e.update(function(e){return e}):e}}(),e.Pipeline.registerFunction(e.hy.stemmer,"stemmer-hy")}});
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Italian` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.it=function(){this.pipeline.reset(),this.pipeline.add(e.it.trimmer,e.it.stopWordFilter,e.it.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.it.stemmer))},e.it.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.it.trimmer=e.trimmerSupport.generateTrimmer(e.it.wordCharacters),e.Pipeline.registerFunction(e.it.trimmer,"trimmer-it"),e.it.stemmer=function(){var r=e.stemmerSupport.Among,n=e.stemmerSupport.SnowballProgram,i=new function(){function e(e,r,n){return!(!x.eq_s(1,e)||(x.ket=x.cursor,!x.in_grouping(L,97,249)))&&(x.slice_from(r),x.cursor=n,!0)}function i(){for(var r,n,i,o,t=x.cursor;;){if(x.bra=x.cursor,r=x.find_among(h,7))switch(x.ket=x.cursor,r){case 1:x.slice_from("à");continue;case 2:x.slice_from("è");continue;case 3:x.slice_from("ì");continue;case 4:x.slice_from("ò");continue;case 5:x.slice_from("ù");continue;case 6:x.slice_from("qU");continue;case 7:if(x.cursor>=x.limit)break;x.cursor++;continue}break}for(x.cursor=t;;)for(n=x.cursor;;){if(i=x.cursor,x.in_grouping(L,97,249)){if(x.bra=x.cursor,o=x.cursor,e("u","U",i))break;if(x.cursor=o,e("i","I",i))break}if(x.cursor=i,x.cursor>=x.limit)return void(x.cursor=n);x.cursor++}}function o(e){if(x.cursor=e,!x.in_grouping(L,97,249))return!1;for(;!x.out_grouping(L,97,249);){if(x.cursor>=x.limit)return!1;x.cursor++}return!0}function t(){if(x.in_grouping(L,97,249)){var e=x.cursor;if(x.out_grouping(L,97,249)){for(;!x.in_grouping(L,97,249);){if(x.cursor>=x.limit)return o(e);x.cursor++}return!0}return o(e)}return!1}function s(){var e,r=x.cursor;if(!t()){if(x.cursor=r,!x.out_grouping(L,97,249))return;if(e=x.cursor,x.out_grouping(L,97,249)){for(;!x.in_grouping(L,97,249);){if(x.cursor>=x.limit)return x.cursor=e,void(x.in_grouping(L,97,249)&&x.cursor<x.limit&&x.cursor++);x.cursor++}return void(k=x.cursor)}if(x.cursor=e,!x.in_grouping(L,97,249)||x.cursor>=x.limit)return;x.cursor++}k=x.cursor}function a(){for(;!x.in_grouping(L,97,249);){if(x.cursor>=x.limit)return!1;x.cursor++}for(;!x.out_grouping(L,97,249);){if(x.cursor>=x.limit)return!1;x.cursor++}return!0}function u(){var e=x.cursor;k=x.limit,p=k,g=k,s(),x.cursor=e,a()&&(p=x.cursor,a()&&(g=x.cursor))}function c(){for(var e;;){if(x.bra=x.cursor,!(e=x.find_among(q,3)))break;switch(x.ket=x.cursor,e){case 1:x.slice_from("i");break;case 2:x.slice_from("u");break;case 3:if(x.cursor>=x.limit)return;x.cursor++}}}function w(){return k<=x.cursor}function l(){return p<=x.cursor}function m(){return g<=x.cursor}function f(){var e;if(x.ket=x.cursor,x.find_among_b(C,37)&&(x.bra=x.cursor,(e=x.find_among_b(z,5))&&w()))switch(e){case 1:x.slice_del();break;case 2:x.slice_from("e")}}function v(){var e;if(x.ket=x.cursor,!(e=x.find_among_b(S,51)))return!1;switch(x.bra=x.cursor,e){case 1:if(!m())return!1;x.slice_del();break;case 2:if(!m())return!1;x.slice_del(),x.ket=x.cursor,x.eq_s_b(2,"ic")&&(x.bra=x.cursor,m()&&x.slice_del());break;case 3:if(!m())return!1;x.slice_from("log");break;case 4:if(!m())return!1;x.slice_from("u");break;case 5:if(!m())return!1;x.slice_from("ente");break;case 6:if(!w())return!1;x.slice_del();break;case 7:if(!l())return!1;x.slice_del(),x.ket=x.cursor,e=x.find_among_b(P,4),e&&(x.bra=x.cursor,m()&&(x.slice_del(),1==e&&(x.ket=x.cursor,x.eq_s_b(2,"at")&&(x.bra=x.cursor,m()&&x.slice_del()))));break;case 8:if(!m())return!1;x.slice_del(),x.ket=x.cursor,e=x.find_among_b(F,3),e&&(x.bra=x.cursor,1==e&&m()&&x.slice_del());break;case 9:if(!m())return!1;x.slice_del(),x.ket=x.cursor,x.eq_s_b(2,"at")&&(x.bra=x.cursor,m()&&(x.slice_del(),x.ket=x.cursor,x.eq_s_b(2,"ic")&&(x.bra=x.cursor,m()&&x.slice_del())))}return!0}function b(){var e,r;x.cursor>=k&&(r=x.limit_backward,x.limit_backward=k,x.ket=x.cursor,e=x.find_among_b(W,87),e&&(x.bra=x.cursor,1==e&&x.slice_del()),x.limit_backward=r)}function d(){var e=x.limit-x.cursor;if(x.ket=x.cursor,x.in_grouping_b(y,97,242)&&(x.bra=x.cursor,w()&&(x.slice_del(),x.ket=x.cursor,x.eq_s_b(1,"i")&&(x.bra=x.cursor,w()))))return void x.slice_del();x.cursor=x.limit-e}function _(){d(),x.ket=x.cursor,x.eq_s_b(1,"h")&&(x.bra=x.cursor,x.in_grouping_b(U,99,103)&&w()&&x.slice_del())}var g,p,k,h=[new r("",-1,7),new r("qu",0,6),new r("á",0,1),new r("é",0,2),new r("í",0,3),new r("ó",0,4),new r("ú",0,5)],q=[new r("",-1,3),new r("I",0,1),new r("U",0,2)],C=[new r("la",-1,-1),new r("cela",0,-1),new r("gliela",0,-1),new r("mela",0,-1),new r("tela",0,-1),new r("vela",0,-1),new r("le",-1,-1),new r("cele",6,-1),new r("gliele",6Line truncated
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");var r="2"==e.version[0];e.ja=function(){this.pipeline.reset(),this.pipeline.add(e.ja.trimmer,e.ja.stopWordFilter,e.ja.stemmer),r?this.tokenizer=e.ja.tokenizer:(e.tokenizer&&(e.tokenizer=e.ja.tokenizer),this.tokenizerFn&&(this.tokenizerFn=e.ja.tokenizer))};var t=new e.TinySegmenter;e.ja.tokenizer=function(i){var n,o,s,p,a,u,m,l,c,f;if(!arguments.length||null==i||void 0==i)return[];if(Array.isArray(i))return i.map(function(t){return r?new e.Token(t.toLowerCase()):t.toLowerCase()});for(o=i.toString().toLowerCase().replace(/^\s+/,""),n=o.length-1;n>=0;n--)if(/\S/.test(o.charAt(n))){o=o.substring(0,n+1);break}for(a=[],s=o.length,c=0,l=0;c<=s;c++)if(u=o.charAt(c),m=c-l,u.match(/\s/)||c==s){if(m>0)for(p=t.segment(o.slice(l,c)).filter(function(e){return!!e}),f=l,n=0;n<p.length;n++)r?a.push(new e.Token(p[n],{position:[f,p[n].length],index:a.length})):a.push(p[n]),f+=p[n].length;l=c+1}return a},e.ja.stemmer=function(){return function(e){return e}}(),e.Pipeline.registerFunction(e.ja.stemmer,"stemmer-ja"),e.ja.wordCharacters="一二三四五六七八九十百千万億兆一-龠々〆ヵヶぁ-んァ-ヴーア-ン゙a-zA-Za-zA-Z0-90-9",e.ja.trimmer=e.trimmerSupport.generateTrimmer(e.ja.wordCharacters),e.Pipeline.registerFunction(e.ja.trimmer,"trimmer-ja"),e.ja.stopWordFilter=e.generateStopWordFilter("これ それ あれ この その あの ここ そこ あそこ こちら どこ だれ なに なん 何 私 貴方 貴方方 我々 私達 あの人 あのかた 彼女 彼 です あります おります います は が の に を で え から まで より も どの と し それで しかし".split(" ")),e.Pipeline.registerFunction(e.ja.stopWordFilter,"stopWordFilter-ja"),e.jp=e.ja,e.Pipeline.registerFunction(e.jp.stemmer,"stemmer-jp"),e.Pipeline.registerFunction(e.jp.trimmer,"trimmer-jp"),e.Pipeline.registerFunction(e.jp.stopWordFilter,"stopWordFilter-jp")}});
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module.exports=require("./lunr.ja");
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!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.kn=function(){this.pipeline.reset(),this.pipeline.add(e.kn.trimmer,e.kn.stopWordFilter,e.kn.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.kn.stemmer))},e.kn.wordCharacters="ಀ-಄ಅ-ಔಕ-ಹಾ-ೌ಼-ಽೕ-ೖೝ-ೞೠ-ೡೢ-ೣ೦-೯ೱ-ೳ",e.kn.trimmer=e.trimmerSupport.generateTrimmer(e.kn.wordCharacters),e.Pipeline.registerFunction(e.kn.trimmer,"trimmer-kn"),e.kn.stopWordFilter=e.generateStopWordFilter("ಮತ್ತು ಈ ಒಂದು ರಲ್ಲಿ ಹಾಗೂ ಎಂದು ಅಥವಾ ಇದು ರ ಅವರು ಎಂಬ ಮೇಲೆ ಅವರ ತನ್ನ ಆದರೆ ತಮ್ಮ ನಂತರ ಮೂಲಕ ಹೆಚ್ಚು ನ ಆ ಕೆಲವು ಅನೇಕ ಎರಡು ಹಾಗು ಪ್ರಮುಖ ಇದನ್ನು ಇದರ ಸುಮಾರು ಅದರ ಅದು ಮೊದಲ ಬಗ್ಗೆ ನಲ್ಲಿ ರಂದು ಇತರ ಅತ್ಯಂತ ಹೆಚ್ಚಿನ ಸಹ ಸಾಮಾನ್ಯವಾಗಿ ನೇ ಹಲವಾರು ಹೊಸ ದಿ ಕಡಿಮೆ ಯಾವುದೇ ಹೊಂದಿದೆ ದೊಡ್ಡ ಅನ್ನು ಇವರು ಪ್ರಕಾರ ಇದೆ ಮಾತ್ರ ಕೂಡ ಇಲ್ಲಿ ಎಲ್ಲಾ ವಿವಿಧ ಅದನ್ನು ಹಲವು ರಿಂದ ಕೇವಲ ದ ದಕ್ಷಿಣ ಗೆ ಅವನ ಅತಿ ನೆಯ ಬಹಳ ಕೆಲಸ ಎಲ್ಲ ಪ್ರತಿ ಇತ್ಯಾದಿ ಇವು ಬೇರೆ ಹೀಗೆ ನಡುವೆ ಇದಕ್ಕೆ ಎಸ್ ಇವರ ಮೊದಲು ಶ್ರೀ ಮಾಡುವ ಇದರಲ್ಲಿ ರೀತಿಯ ಮಾಡಿದ ಕಾಲ ಅಲ್ಲಿ ಮಾಡಲು ಅದೇ ಈಗ ಅವು ಗಳು ಎ ಎಂಬುದು ಅವನು ಅಂದರೆ ಅವರಿಗೆ ಇರುವ ವಿಶೇಷ ಮುಂದೆ ಅವುಗಳ ಮುಂತಾದ ಮೂಲ ಬಿ ಮೀ ಒಂದೇ ಇನ್ನೂ ಹೆಚ್ಚಾಗಿ ಮಾಡಿ ಅವರನ್ನು ಇದೇ ಯ ರೀತಿಯಲ್ಲಿ ಜೊತೆ ಅದರಲ್ಲಿ ಮಾಡಿದರು ನಡೆದ ಆಗ ಮತ್ತೆ ಪೂರ್ವ ಆತ ಬಂದ ಯಾವ ಒಟ್ಟು ಇತರೆ ಹಿಂದೆ ಪ್ರಮಾಣದ ಗಳನ್ನು ಕುರಿತು ಯು ಆದ್ದರಿಂದ ಅಲ್ಲದೆ ನಗರದ ಮೇಲಿನ ಏಕೆಂದರೆ ರಷ್ಟು ಎಂಬುದನ್ನು ಬಾರಿ ಎಂದರೆ ಹಿಂದಿನ ಆದರೂ ಆದ ಸಂಬಂಧಿಸಿದ ಮತ್ತೊಂದು ಸಿ ಆತನ ".split(" ")),e.kn.stemmer=function(){return function(e){return"function"==typeof e.update?e.update(function(e){return e}):e}}();var r=e.wordcut;r.init(),e.kn.tokenizer=function(t){if(!arguments.length||null==t||void 0==t)return[];if(Array.isArray(t))return t.map(function(r){return isLunr2?new e.Token(r.toLowerCase()):r.toLowerCase()});var n=t.toString().toLowerCase().replace(/^\s+/,"");return r.cut(n).split("|")},e.Pipeline.registerFunction(e.kn.stemmer,"stemmer-kn"),e.Pipeline.registerFunction(e.kn.stopWordFilter,"stopWordFilter-kn")}});
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!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.ko=function(){this.pipeline.reset(),this.pipeline.add(e.ko.trimmer,e.ko.stopWordFilter)},e.ko.wordCharacters="[A-Za-z가-힣]",e.ko.trimmer=e.trimmerSupport.generateTrimmer(e.ko.wordCharacters),e.Pipeline.registerFunction(e.ko.trimmer,"trimmer-ko"),e.ko.stopWordFilter=e.generateStopWordFilter("아 휴 아이구 아이쿠 아이고 어 나 우리 저희 따라 의해 을 를 에 의 가 으로 로 에게 뿐이다 의거하여 근거하여 입각하여 기준으로 예하면 예를 들면 예를 들자면 저 소인 소생 저희 지말고 하지마 하지마라 다른 물론 또한 그리고 비길수 없다 해서는 안된다 뿐만 아니라 만이 아니다 만은 아니다 막론하고 관계없이 그치지 않다 그러나 그런데 하지만 든간에 논하지 않다 따지지 않다 설사 비록 더라도 아니면 만 못하다 하는 편이 낫다 불문하고 향하여 향해서 향하다 쪽으로 틈타 이용하여 타다 오르다 제외하고 이 외에 이 밖에 하여야 비로소 한다면 몰라도 외에도 이곳 여기 부터 기점으로 따라서 할 생각이다 하려고하다 이리하여 그리하여 그렇게 함으로써 하지만 일때 할때 앞에서 중에서 보는데서 으로써 로써 까지 해야한다 일것이다 반드시 할줄알다 할수있다 할수있어 임에 틀림없다 한다면 등 등등 제 겨우 단지 다만 할뿐 딩동 댕그 대해서 대하여 대하면 훨씬 얼마나 얼마만큼 얼마큼 남짓 여 얼마간 약간 다소 좀 조금 다수 몇 얼마 지만 하물며 또한 그러나 그렇지만 하지만 이외에도 대해 말하자면 뿐이다 다음에 반대로 반대로 말하자면 이와 반대로 바꾸어서 말하면 바꾸어서 한다면 만약 그렇지않으면 까악 툭 딱 삐걱거리다 보드득 비걱거리다 꽈당 응당 해야한다 에 가서 각 각각 여러분 각종 각자 제각기 하도록하다 와 과 그러므로 그래서 고로 한 까닭에 하기 때문에 거니와 이지만 대하여 관하여 관한 과연 실로 아니나다를가 생각한대로 진짜로 한적이있다 하곤하였다 하 하하 허허 아하 거바 와 오 왜 어째서 무엇때문에 어찌 하겠는가 무슨 어디 어느곳 더군다나 하물며 더욱이는 어느때 언제 야 이봐 어이 여보시오 흐흐 흥 휴 헉헉 헐떡헐떡 영차 여차 어기여차 끙끙 아야 앗 아야 콸콸 졸졸 좍좍 뚝뚝 주룩주룩 솨 우르르 그래도 또 그리고 바꾸어말하면 바꾸어말하자면 혹은 혹시 답다 및 그에 따르는 때가 되어 즉 지든지 설령 가령 하더라도 할지라도 일지라도 지든지 몇 거의 하마터면 인젠 이젠 된바에야 된이상 만큼\t어찌됏든 그위에 게다가 점에서 보아 비추어 보아 고려하면 하게될것이다 일것이다 비교적 좀 보다더 비하면 시키다 하게하다 할만하다 의해서 연이서 이어서 잇따라 뒤따라 뒤이어 결국 의지하여 기대여 통하여 자마자 더욱더 불구하고 얼마든지 마음대로 주저하지 않고 곧 즉시 바로 당장 하자마자 밖에 안된다 하면된다 그래 그렇지 요컨대 다시 말하자면 바꿔 말하면 즉 구체적으로 말하자면 시작하여 시초에 이상 허 헉 허걱 바와같이 해도좋다 해도된다 게다가 더구나 하물며 와르르 팍 퍽 펄렁 동안 이래 하고있었다 이었다 에서 로부터 까지 예하면 했어요 해요 함께 같이 더불어 마저 마저도 양자 모두 습니다 가까스로 하려고하다 즈음하여 다른 다른 방면으로 해봐요 습니까 했어요 말할것도 없고 무릎쓰고 개의치않고 하는것만 못하다 하는것이 낫다 매 매번 들 모 어느것 어느 로써 갖고말하자면 어디 어느쪽 어느것 어느해 어느 년도 라 해도 언젠가 어떤것 어느것 저기 저쪽 저것 그때 그럼 그러면 요만한걸 그래 그때 저것만큼 그저 이르기까지 할 줄 안다 할 힘이 있다 너 너희 당신 어찌 설마 차라리 할지언정 할지라도 할망정 할지언정 구토하다 게우다 토하다 메쓰겁다 옆사람 퉤 쳇 의거하여 근거하여 의해 따라 힘입어 그 다음 버금 두번째로 기타 첫번째로 나머지는 그중에서 견지에서 형식으로 쓰여 입장에서 위해서 단지 의해되다 하도록시키다 뿐만아니라 반대로 전후 전자 앞의것 잠시 잠깐 하면서 그렇지만 다음에 그러한즉 그런즉 남들 아무거나 어찌하Line truncated
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!function(e,t){"function"==typeof define&&define.amd?define(t):"object"==typeof exports?module.exports=t():t()(e.lunr)}(this,function(){return function(e){e.multiLanguage=function(){for(var t=Array.prototype.slice.call(arguments),i=t.join("-"),r="",n=[],s=[],p=0;p<t.length;++p)"en"==t[p]?(r+="\\w",n.unshift(e.stopWordFilter),n.push(e.stemmer),s.push(e.stemmer)):(r+=e[t[p]].wordCharacters,e[t[p]].stopWordFilter&&n.unshift(e[t[p]].stopWordFilter),e[t[p]].stemmer&&(n.push(e[t[p]].stemmer),s.push(e[t[p]].stemmer)));var o=e.trimmerSupport.generateTrimmer(r);return e.Pipeline.registerFunction(o,"lunr-multi-trimmer-"+i),n.unshift(o),function(){this.pipeline.reset(),this.pipeline.add.apply(this.pipeline,n),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add.apply(this.searchPipeline,s))}}}});
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/*!
|
||||||
|
* Lunr languages, `Dutch` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
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||||||
|
!function(r,e){"function"==typeof define&&define.amd?define(e):"object"==typeof exports?module.exports=e():e()(r.lunr)}(this,function(){return function(r){if(void 0===r)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===r.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");r.nl=function(){this.pipeline.reset(),this.pipeline.add(r.nl.trimmer,r.nl.stopWordFilter,r.nl.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(r.nl.stemmer))},r.nl.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",r.nl.trimmer=r.trimmerSupport.generateTrimmer(r.nl.wordCharacters),r.Pipeline.registerFunction(r.nl.trimmer,"trimmer-nl"),r.nl.stemmer=function(){var e=r.stemmerSupport.Among,i=r.stemmerSupport.SnowballProgram,n=new function(){function r(){for(var r,e,i,o=C.cursor;;){if(C.bra=C.cursor,r=C.find_among(b,11))switch(C.ket=C.cursor,r){case 1:C.slice_from("a");continue;case 2:C.slice_from("e");continue;case 3:C.slice_from("i");continue;case 4:C.slice_from("o");continue;case 5:C.slice_from("u");continue;case 6:if(C.cursor>=C.limit)break;C.cursor++;continue}break}for(C.cursor=o,C.bra=o,C.eq_s(1,"y")?(C.ket=C.cursor,C.slice_from("Y")):C.cursor=o;;)if(e=C.cursor,C.in_grouping(q,97,232)){if(i=C.cursor,C.bra=i,C.eq_s(1,"i"))C.ket=C.cursor,C.in_grouping(q,97,232)&&(C.slice_from("I"),C.cursor=e);else if(C.cursor=i,C.eq_s(1,"y"))C.ket=C.cursor,C.slice_from("Y"),C.cursor=e;else if(n(e))break}else if(n(e))break}function n(r){return C.cursor=r,r>=C.limit||(C.cursor++,!1)}function o(){_=C.limit,d=_,t()||(_=C.cursor,_<3&&(_=3),t()||(d=C.cursor))}function t(){for(;!C.in_grouping(q,97,232);){if(C.cursor>=C.limit)return!0;C.cursor++}for(;!C.out_grouping(q,97,232);){if(C.cursor>=C.limit)return!0;C.cursor++}return!1}function s(){for(var r;;)if(C.bra=C.cursor,r=C.find_among(p,3))switch(C.ket=C.cursor,r){case 1:C.slice_from("y");break;case 2:C.slice_from("i");break;case 3:if(C.cursor>=C.limit)return;C.cursor++}}function u(){return _<=C.cursor}function c(){return d<=C.cursor}function a(){var r=C.limit-C.cursor;C.find_among_b(g,3)&&(C.cursor=C.limit-r,C.ket=C.cursor,C.cursor>C.limit_backward&&(C.cursor--,C.bra=C.cursor,C.slice_del()))}function l(){var r;w=!1,C.ket=C.cursor,C.eq_s_b(1,"e")&&(C.bra=C.cursor,u()&&(r=C.limit-C.cursor,C.out_grouping_b(q,97,232)&&(C.cursor=C.limit-r,C.slice_del(),w=!0,a())))}function m(){var r;u()&&(r=C.limit-C.cursor,C.out_grouping_b(q,97,232)&&(C.cursor=C.limit-r,C.eq_s_b(3,"gem")||(C.cursor=C.limit-r,C.slice_del(),a())))}function f(){var r,e,i,n,o,t,s=C.limit-C.cursor;if(C.ket=C.cursor,r=C.find_among_b(h,5))switch(C.bra=C.cursor,r){case 1:u()&&C.slice_from("heid");break;case 2:m();break;case 3:u()&&C.out_grouping_b(j,97,232)&&C.slice_del()}if(C.cursor=C.limit-s,l(),C.cursor=C.limit-s,C.ket=C.cursor,C.eq_s_b(4,"heid")&&(C.bra=C.cursor,c()&&(e=C.limit-C.cursor,C.eq_s_b(1,"c")||(C.cursor=C.limit-e,C.slice_del(),C.ket=C.cursor,C.eq_s_b(2,"en")&&(C.bra=C.cursor,m())))),C.cursor=C.limit-s,C.ket=C.cursor,r=C.find_among_b(k,6))switch(C.bra=C.cursor,r){case 1:if(c()){if(C.slice_del(),i=C.limit-C.cursor,C.ket=C.cursor,C.eq_s_b(2,"ig")&&(C.bra=C.cursor,c()&&(n=C.limit-C.cursor,!C.eq_s_b(1,"e")))){C.cursor=C.limit-n,C.slice_del();break}C.cursor=C.limit-i,a()}break;case 2:c()&&(o=C.limit-C.cursor,C.eq_s_b(1,"e")||(C.cursor=C.limit-o,C.slice_del()));break;case 3:c()&&(C.slice_del(),l());break;case 4:c()&&C.slice_del();break;case 5:c()&&w&&C.slice_del()}C.cursor=C.limit-s,C.out_grouping_b(z,73,232)&&(t=C.limit-C.cursor,C.find_among_b(v,4)&&C.out_grouping_b(q,97,232)&&(C.cursor=C.limit-t,C.ket=C.cursor,C.cursor>C.limit_backward&&(C.cursor--,C.bra=C.cursor,C.slice_del())))}var d,_,w,b=[new e("",-1,6),new e("á",0,1),new e("ä",0,1),new e("é",0,2),new e("ë",0,2),new e("í",0,3),new e("ï",0,3),new e("ó",0,4),new e("ö",0,4),new e("ú",0,5),new e("ü",0,5)],p=[new e("",-1,3),new e("I",0,2),new e("Y",0,1)],g=[new e("dd",-1,-1),new e("kk",-1,-1),new e("tt",-1,-1)],h=[new e("ene",-1,2),new e("se",-1,3),new e("en",-1,2),new e("heden",2,1),new e("s",-1,3)],k=[new e("end",-1,1),new e("ig",-1,2),new e("ing",-1,1),new e("lijk",-1,3),new e("baar",-1,4),new e("bar",-1,5)],v=[new e("aa",-1,-1),new e("ee",-1,-1),new e("oo",-1,-1),new e("uu",-1,-1)],q=[17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,128],z=[1,0,0,17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,128],j=[17,67,16,1,0,0,0,0,0,0,0,0,0,0,0,0,128],C=new i;this.setCurrent=function(r){C.setCurrent(r)},this.getCurrent=function(){return C.getCurrent()},this.stem=function(){var e=C.cursor;return r(),C.cursor=e,o(),C.limit_backward=e,C.cursor=C.limit,f(),C.cursor=C.limit_backward,s(),!0}};return function(r){return"function"==typeof r.update?r.update(function(r){return n.setCurrent(r),n.stem(),n.getCurrent()}):(n.setCurrLine truncated
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Norwegian` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.no=function(){this.pipeline.reset(),this.pipeline.add(e.no.trimmer,e.no.stopWordFilter,e.no.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.no.stemmer))},e.no.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.no.trimmer=e.trimmerSupport.generateTrimmer(e.no.wordCharacters),e.Pipeline.registerFunction(e.no.trimmer,"trimmer-no"),e.no.stemmer=function(){var r=e.stemmerSupport.Among,n=e.stemmerSupport.SnowballProgram,i=new function(){function e(){var e,r=w.cursor+3;if(a=w.limit,0<=r||r<=w.limit){for(s=r;;){if(e=w.cursor,w.in_grouping(d,97,248)){w.cursor=e;break}if(e>=w.limit)return;w.cursor=e+1}for(;!w.out_grouping(d,97,248);){if(w.cursor>=w.limit)return;w.cursor++}a=w.cursor,a<s&&(a=s)}}function i(){var e,r,n;if(w.cursor>=a&&(r=w.limit_backward,w.limit_backward=a,w.ket=w.cursor,e=w.find_among_b(m,29),w.limit_backward=r,e))switch(w.bra=w.cursor,e){case 1:w.slice_del();break;case 2:n=w.limit-w.cursor,w.in_grouping_b(c,98,122)?w.slice_del():(w.cursor=w.limit-n,w.eq_s_b(1,"k")&&w.out_grouping_b(d,97,248)&&w.slice_del());break;case 3:w.slice_from("er")}}function t(){var e,r=w.limit-w.cursor;w.cursor>=a&&(e=w.limit_backward,w.limit_backward=a,w.ket=w.cursor,w.find_among_b(u,2)?(w.bra=w.cursor,w.limit_backward=e,w.cursor=w.limit-r,w.cursor>w.limit_backward&&(w.cursor--,w.bra=w.cursor,w.slice_del())):w.limit_backward=e)}function o(){var e,r;w.cursor>=a&&(r=w.limit_backward,w.limit_backward=a,w.ket=w.cursor,e=w.find_among_b(l,11),e?(w.bra=w.cursor,w.limit_backward=r,1==e&&w.slice_del()):w.limit_backward=r)}var s,a,m=[new r("a",-1,1),new r("e",-1,1),new r("ede",1,1),new r("ande",1,1),new r("ende",1,1),new r("ane",1,1),new r("ene",1,1),new r("hetene",6,1),new r("erte",1,3),new r("en",-1,1),new r("heten",9,1),new r("ar",-1,1),new r("er",-1,1),new r("heter",12,1),new r("s",-1,2),new r("as",14,1),new r("es",14,1),new r("edes",16,1),new r("endes",16,1),new r("enes",16,1),new r("hetenes",19,1),new r("ens",14,1),new r("hetens",21,1),new r("ers",14,1),new r("ets",14,1),new r("et",-1,1),new r("het",25,1),new r("ert",-1,3),new r("ast",-1,1)],u=[new r("dt",-1,-1),new r("vt",-1,-1)],l=[new r("leg",-1,1),new r("eleg",0,1),new r("ig",-1,1),new r("eig",2,1),new r("lig",2,1),new r("elig",4,1),new r("els",-1,1),new r("lov",-1,1),new r("elov",7,1),new r("slov",7,1),new r("hetslov",9,1)],d=[17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,48,0,128],c=[119,125,149,1],w=new n;this.setCurrent=function(e){w.setCurrent(e)},this.getCurrent=function(){return w.getCurrent()},this.stem=function(){var r=w.cursor;return e(),w.limit_backward=r,w.cursor=w.limit,i(),w.cursor=w.limit,t(),w.cursor=w.limit,o(),!0}};return function(e){return"function"==typeof e.update?e.update(function(e){return i.setCurrent(e),i.stem(),i.getCurrent()}):(i.setCurrent(e),i.stem(),i.getCurrent())}}(),e.Pipeline.registerFunction(e.no.stemmer,"stemmer-no"),e.no.stopWordFilter=e.generateStopWordFilter("alle at av bare begge ble blei bli blir blitt både båe da de deg dei deim deira deires dem den denne der dere deres det dette di din disse ditt du dykk dykkar då eg ein eit eitt eller elles en enn er et ett etter for fordi fra før ha hadde han hans har hennar henne hennes her hjå ho hoe honom hoss hossen hun hva hvem hver hvilke hvilken hvis hvor hvordan hvorfor i ikke ikkje ikkje ingen ingi inkje inn inni ja jeg kan kom korleis korso kun kunne kva kvar kvarhelst kven kvi kvifor man mange me med medan meg meget mellom men mi min mine mitt mot mykje ned no noe noen noka noko nokon nokor nokre nå når og også om opp oss over på samme seg selv si si sia sidan siden sin sine sitt sjøl skal skulle slik so som som somme somt så sånn til um upp ut uten var vart varte ved vere verte vi vil ville vore vors vort vår være være vært å".split(" ")),e.Pipeline.registerFunction(e.no.stopWordFilter,"stopWordFilter-no")}});
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Portuguese` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.pt=function(){this.pipeline.reset(),this.pipeline.add(e.pt.trimmer,e.pt.stopWordFilter,e.pt.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.pt.stemmer))},e.pt.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.pt.trimmer=e.trimmerSupport.generateTrimmer(e.pt.wordCharacters),e.Pipeline.registerFunction(e.pt.trimmer,"trimmer-pt"),e.pt.stemmer=function(){var r=e.stemmerSupport.Among,s=e.stemmerSupport.SnowballProgram,n=new function(){function e(){for(var e;;){if(z.bra=z.cursor,e=z.find_among(k,3))switch(z.ket=z.cursor,e){case 1:z.slice_from("a~");continue;case 2:z.slice_from("o~");continue;case 3:if(z.cursor>=z.limit)break;z.cursor++;continue}break}}function n(){if(z.out_grouping(y,97,250)){for(;!z.in_grouping(y,97,250);){if(z.cursor>=z.limit)return!0;z.cursor++}return!1}return!0}function i(){if(z.in_grouping(y,97,250))for(;!z.out_grouping(y,97,250);){if(z.cursor>=z.limit)return!1;z.cursor++}return g=z.cursor,!0}function o(){var e,r,s=z.cursor;if(z.in_grouping(y,97,250))if(e=z.cursor,n()){if(z.cursor=e,i())return}else g=z.cursor;if(z.cursor=s,z.out_grouping(y,97,250)){if(r=z.cursor,n()){if(z.cursor=r,!z.in_grouping(y,97,250)||z.cursor>=z.limit)return;z.cursor++}g=z.cursor}}function t(){for(;!z.in_grouping(y,97,250);){if(z.cursor>=z.limit)return!1;z.cursor++}for(;!z.out_grouping(y,97,250);){if(z.cursor>=z.limit)return!1;z.cursor++}return!0}function a(){var e=z.cursor;g=z.limit,b=g,h=g,o(),z.cursor=e,t()&&(b=z.cursor,t()&&(h=z.cursor))}function u(){for(var e;;){if(z.bra=z.cursor,e=z.find_among(q,3))switch(z.ket=z.cursor,e){case 1:z.slice_from("ã");continue;case 2:z.slice_from("õ");continue;case 3:if(z.cursor>=z.limit)break;z.cursor++;continue}break}}function w(){return g<=z.cursor}function m(){return b<=z.cursor}function c(){return h<=z.cursor}function l(){var e;if(z.ket=z.cursor,!(e=z.find_among_b(F,45)))return!1;switch(z.bra=z.cursor,e){case 1:if(!c())return!1;z.slice_del();break;case 2:if(!c())return!1;z.slice_from("log");break;case 3:if(!c())return!1;z.slice_from("u");break;case 4:if(!c())return!1;z.slice_from("ente");break;case 5:if(!m())return!1;z.slice_del(),z.ket=z.cursor,e=z.find_among_b(j,4),e&&(z.bra=z.cursor,c()&&(z.slice_del(),1==e&&(z.ket=z.cursor,z.eq_s_b(2,"at")&&(z.bra=z.cursor,c()&&z.slice_del()))));break;case 6:if(!c())return!1;z.slice_del(),z.ket=z.cursor,e=z.find_among_b(C,3),e&&(z.bra=z.cursor,1==e&&c()&&z.slice_del());break;case 7:if(!c())return!1;z.slice_del(),z.ket=z.cursor,e=z.find_among_b(P,3),e&&(z.bra=z.cursor,1==e&&c()&&z.slice_del());break;case 8:if(!c())return!1;z.slice_del(),z.ket=z.cursor,z.eq_s_b(2,"at")&&(z.bra=z.cursor,c()&&z.slice_del());break;case 9:if(!w()||!z.eq_s_b(1,"e"))return!1;z.slice_from("ir")}return!0}function f(){var e,r;if(z.cursor>=g){if(r=z.limit_backward,z.limit_backward=g,z.ket=z.cursor,e=z.find_among_b(S,120))return z.bra=z.cursor,1==e&&z.slice_del(),z.limit_backward=r,!0;z.limit_backward=r}return!1}function d(){var e;z.ket=z.cursor,(e=z.find_among_b(W,7))&&(z.bra=z.cursor,1==e&&w()&&z.slice_del())}function v(e,r){if(z.eq_s_b(1,e)){z.bra=z.cursor;var s=z.limit-z.cursor;if(z.eq_s_b(1,r))return z.cursor=z.limit-s,w()&&z.slice_del(),!1}return!0}function p(){var e;if(z.ket=z.cursor,e=z.find_among_b(L,4))switch(z.bra=z.cursor,e){case 1:w()&&(z.slice_del(),z.ket=z.cursor,z.limit-z.cursor,v("u","g")&&v("i","c"));break;case 2:z.slice_from("c")}}function _(){if(!l()&&(z.cursor=z.limit,!f()))return z.cursor=z.limit,void d();z.cursor=z.limit,z.ket=z.cursor,z.eq_s_b(1,"i")&&(z.bra=z.cursor,z.eq_s_b(1,"c")&&(z.cursor=z.limit,w()&&z.slice_del()))}var h,b,g,k=[new r("",-1,3),new r("ã",0,1),new r("õ",0,2)],q=[new r("",-1,3),new r("a~",0,1),new r("o~",0,2)],j=[new r("ic",-1,-1),new r("ad",-1,-1),new r("os",-1,-1),new r("iv",-1,1)],C=[new r("ante",-1,1),new r("avel",-1,1),new r("ível",-1,1)],P=[new r("ic",-1,1),new r("abil",-1,1),new r("iv",-1,1)],F=[new r("ica",-1,1),new r("ância",-1,1),new r("ência",-1,4),new r("ira",-1,9),new r("adora",-1,1),new r("osa",-1,1),new r("ista",-1,1),new r("iva",-1,8),new r("eza",-1,1),new r("logía",-1,2),new r("idade",-1,7),new r("ante",-1,1),new r("mente",-1,6),new r("amente",12,5),new r("ável",-1,1),new r("ível",-1,1),new r("ución",-1,3),new r("ico",-1,1),new r("ismo",-1,1),new r("oso",-1,1),new r("amento",-1,1),new r("imento",-1,1),new r("ivo",-1,8),new r("aça~o",-1,1),new r("ador",-1,1),new r("icas",-1,1),new r("ências",-1,4),new r("iras",-1,9),Line truncated
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Romanian` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,i){"function"==typeof define&&define.amd?define(i):"object"==typeof exports?module.exports=i():i()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.ro=function(){this.pipeline.reset(),this.pipeline.add(e.ro.trimmer,e.ro.stopWordFilter,e.ro.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.ro.stemmer))},e.ro.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.ro.trimmer=e.trimmerSupport.generateTrimmer(e.ro.wordCharacters),e.Pipeline.registerFunction(e.ro.trimmer,"trimmer-ro"),e.ro.stemmer=function(){var i=e.stemmerSupport.Among,r=e.stemmerSupport.SnowballProgram,n=new function(){function e(e,i){L.eq_s(1,e)&&(L.ket=L.cursor,L.in_grouping(W,97,259)&&L.slice_from(i))}function n(){for(var i,r;;){if(i=L.cursor,L.in_grouping(W,97,259)&&(r=L.cursor,L.bra=r,e("u","U"),L.cursor=r,e("i","I")),L.cursor=i,L.cursor>=L.limit)break;L.cursor++}}function t(){if(L.out_grouping(W,97,259)){for(;!L.in_grouping(W,97,259);){if(L.cursor>=L.limit)return!0;L.cursor++}return!1}return!0}function a(){if(L.in_grouping(W,97,259))for(;!L.out_grouping(W,97,259);){if(L.cursor>=L.limit)return!0;L.cursor++}return!1}function o(){var e,i,r=L.cursor;if(L.in_grouping(W,97,259)){if(e=L.cursor,!t())return void(h=L.cursor);if(L.cursor=e,!a())return void(h=L.cursor)}L.cursor=r,L.out_grouping(W,97,259)&&(i=L.cursor,t()&&(L.cursor=i,L.in_grouping(W,97,259)&&L.cursor<L.limit&&L.cursor++),h=L.cursor)}function u(){for(;!L.in_grouping(W,97,259);){if(L.cursor>=L.limit)return!1;L.cursor++}for(;!L.out_grouping(W,97,259);){if(L.cursor>=L.limit)return!1;L.cursor++}return!0}function c(){var e=L.cursor;h=L.limit,k=h,g=h,o(),L.cursor=e,u()&&(k=L.cursor,u()&&(g=L.cursor))}function s(){for(var e;;){if(L.bra=L.cursor,e=L.find_among(z,3))switch(L.ket=L.cursor,e){case 1:L.slice_from("i");continue;case 2:L.slice_from("u");continue;case 3:if(L.cursor>=L.limit)break;L.cursor++;continue}break}}function w(){return h<=L.cursor}function m(){return k<=L.cursor}function l(){return g<=L.cursor}function f(){var e,i;if(L.ket=L.cursor,(e=L.find_among_b(C,16))&&(L.bra=L.cursor,m()))switch(e){case 1:L.slice_del();break;case 2:L.slice_from("a");break;case 3:L.slice_from("e");break;case 4:L.slice_from("i");break;case 5:i=L.limit-L.cursor,L.eq_s_b(2,"ab")||(L.cursor=L.limit-i,L.slice_from("i"));break;case 6:L.slice_from("at");break;case 7:L.slice_from("aţi")}}function p(){var e,i=L.limit-L.cursor;if(L.ket=L.cursor,(e=L.find_among_b(P,46))&&(L.bra=L.cursor,m())){switch(e){case 1:L.slice_from("abil");break;case 2:L.slice_from("ibil");break;case 3:L.slice_from("iv");break;case 4:L.slice_from("ic");break;case 5:L.slice_from("at");break;case 6:L.slice_from("it")}return _=!0,L.cursor=L.limit-i,!0}return!1}function d(){var e,i;for(_=!1;;)if(i=L.limit-L.cursor,!p()){L.cursor=L.limit-i;break}if(L.ket=L.cursor,(e=L.find_among_b(F,62))&&(L.bra=L.cursor,l())){switch(e){case 1:L.slice_del();break;case 2:L.eq_s_b(1,"ţ")&&(L.bra=L.cursor,L.slice_from("t"));break;case 3:L.slice_from("ist")}_=!0}}function b(){var e,i,r;if(L.cursor>=h){if(i=L.limit_backward,L.limit_backward=h,L.ket=L.cursor,e=L.find_among_b(q,94))switch(L.bra=L.cursor,e){case 1:if(r=L.limit-L.cursor,!L.out_grouping_b(W,97,259)&&(L.cursor=L.limit-r,!L.eq_s_b(1,"u")))break;case 2:L.slice_del()}L.limit_backward=i}}function v(){var e;L.ket=L.cursor,(e=L.find_among_b(S,5))&&(L.bra=L.cursor,w()&&1==e&&L.slice_del())}var _,g,k,h,z=[new i("",-1,3),new i("I",0,1),new i("U",0,2)],C=[new i("ea",-1,3),new i("aţia",-1,7),new i("aua",-1,2),new i("iua",-1,4),new i("aţie",-1,7),new i("ele",-1,3),new i("ile",-1,5),new i("iile",6,4),new i("iei",-1,4),new i("atei",-1,6),new i("ii",-1,4),new i("ului",-1,1),new i("ul",-1,1),new i("elor",-1,3),new i("ilor",-1,4),new i("iilor",14,4)],P=[new i("icala",-1,4),new i("iciva",-1,4),new i("ativa",-1,5),new i("itiva",-1,6),new i("icale",-1,4),new i("aţiune",-1,5),new i("iţiune",-1,6),new i("atoare",-1,5),new i("itoare",-1,6),new i("ătoare",-1,5),new i("icitate",-1,4),new i("abilitate",-1,1),new i("ibilitate",-1,2),new i("ivitate",-1,3),new i("icive",-1,4),new i("ative",-1,5),new i("itive",-1,6),new i("icali",-1,4),new i("atori",-1,5),new i("icatori",18,4),new i("itori",-1,6),new i("ători",-1,5),new i("icitati",-1,4),new i("abilitati",-1,1),new i("ivitati",-1,3),new i("icivi",-1,4),new i("ativi",-1,5),new i("itivi",-1,6),new i("icităi",-1,4),new i("abilităi",-1,1),new i("ivităi",-1,3),new i("icităţi",-1,4),new i("abilităţi",-1,1),new i("ivităţi",-1,3),new i("ical",-1,4),new i("ator",-1,5),new i("icator",35,4),new i("itor",-1,6),new i("ător",-1,5),new i("iciv",-1,4),neLine truncated
|
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|||||||
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/*!
|
||||||
|
* Lunr languages, `Russian` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
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|
*
|
||||||
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* Copyright 2014, Mihai Valentin
|
||||||
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* http://www.mozilla.org/MPL/
|
||||||
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*/
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||||||
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/*!
|
||||||
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* based on
|
||||||
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* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
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|
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|
!function(e,n){"function"==typeof define&&define.amd?define(n):"object"==typeof exports?module.exports=n():n()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.ru=function(){this.pipeline.reset(),this.pipeline.add(e.ru.trimmer,e.ru.stopWordFilter,e.ru.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.ru.stemmer))},e.ru.wordCharacters="Ѐ-҄҇-ԯᴫᵸⷠ-ⷿꙀ-ꚟ︮︯",e.ru.trimmer=e.trimmerSupport.generateTrimmer(e.ru.wordCharacters),e.Pipeline.registerFunction(e.ru.trimmer,"trimmer-ru"),e.ru.stemmer=function(){var n=e.stemmerSupport.Among,r=e.stemmerSupport.SnowballProgram,t=new function(){function e(){for(;!W.in_grouping(S,1072,1103);){if(W.cursor>=W.limit)return!1;W.cursor++}return!0}function t(){for(;!W.out_grouping(S,1072,1103);){if(W.cursor>=W.limit)return!1;W.cursor++}return!0}function w(){b=W.limit,_=b,e()&&(b=W.cursor,t()&&e()&&t()&&(_=W.cursor))}function i(){return _<=W.cursor}function u(e,n){var r,t;if(W.ket=W.cursor,r=W.find_among_b(e,n)){switch(W.bra=W.cursor,r){case 1:if(t=W.limit-W.cursor,!W.eq_s_b(1,"а")&&(W.cursor=W.limit-t,!W.eq_s_b(1,"я")))return!1;case 2:W.slice_del()}return!0}return!1}function o(){return u(h,9)}function s(e,n){var r;return W.ket=W.cursor,!!(r=W.find_among_b(e,n))&&(W.bra=W.cursor,1==r&&W.slice_del(),!0)}function c(){return s(g,26)}function m(){return!!c()&&(u(C,8),!0)}function f(){return s(k,2)}function l(){return u(P,46)}function a(){s(v,36)}function p(){var e;W.ket=W.cursor,(e=W.find_among_b(F,2))&&(W.bra=W.cursor,i()&&1==e&&W.slice_del())}function d(){var e;if(W.ket=W.cursor,e=W.find_among_b(q,4))switch(W.bra=W.cursor,e){case 1:if(W.slice_del(),W.ket=W.cursor,!W.eq_s_b(1,"н"))break;W.bra=W.cursor;case 2:if(!W.eq_s_b(1,"н"))break;case 3:W.slice_del()}}var _,b,h=[new n("в",-1,1),new n("ив",0,2),new n("ыв",0,2),new n("вши",-1,1),new n("ивши",3,2),new n("ывши",3,2),new n("вшись",-1,1),new n("ившись",6,2),new n("ывшись",6,2)],g=[new n("ее",-1,1),new n("ие",-1,1),new n("ое",-1,1),new n("ые",-1,1),new n("ими",-1,1),new n("ыми",-1,1),new n("ей",-1,1),new n("ий",-1,1),new n("ой",-1,1),new n("ый",-1,1),new n("ем",-1,1),new n("им",-1,1),new n("ом",-1,1),new n("ым",-1,1),new n("его",-1,1),new n("ого",-1,1),new n("ему",-1,1),new n("ому",-1,1),new n("их",-1,1),new n("ых",-1,1),new n("ею",-1,1),new n("ою",-1,1),new n("ую",-1,1),new n("юю",-1,1),new n("ая",-1,1),new n("яя",-1,1)],C=[new n("ем",-1,1),new n("нн",-1,1),new n("вш",-1,1),new n("ивш",2,2),new n("ывш",2,2),new n("щ",-1,1),new n("ющ",5,1),new n("ующ",6,2)],k=[new n("сь",-1,1),new n("ся",-1,1)],P=[new n("ла",-1,1),new n("ила",0,2),new n("ыла",0,2),new n("на",-1,1),new n("ена",3,2),new n("ете",-1,1),new n("ите",-1,2),new n("йте",-1,1),new n("ейте",7,2),new n("уйте",7,2),new n("ли",-1,1),new n("или",10,2),new n("ыли",10,2),new n("й",-1,1),new n("ей",13,2),new n("уй",13,2),new n("л",-1,1),new n("ил",16,2),new n("ыл",16,2),new n("ем",-1,1),new n("им",-1,2),new n("ым",-1,2),new n("н",-1,1),new n("ен",22,2),new n("ло",-1,1),new n("ило",24,2),new n("ыло",24,2),new n("но",-1,1),new n("ено",27,2),new n("нно",27,1),new n("ет",-1,1),new n("ует",30,2),new n("ит",-1,2),new n("ыт",-1,2),new n("ют",-1,1),new n("уют",34,2),new n("ят",-1,2),new n("ны",-1,1),new n("ены",37,2),new n("ть",-1,1),new n("ить",39,2),new n("ыть",39,2),new n("ешь",-1,1),new n("ишь",-1,2),new n("ю",-1,2),new n("ую",44,2)],v=[new n("а",-1,1),new n("ев",-1,1),new n("ов",-1,1),new n("е",-1,1),new n("ие",3,1),new n("ье",3,1),new n("и",-1,1),new n("еи",6,1),new n("ии",6,1),new n("ами",6,1),new n("ями",6,1),new n("иями",10,1),new n("й",-1,1),new n("ей",12,1),new n("ией",13,1),new n("ий",12,1),new n("ой",12,1),new n("ам",-1,1),new n("ем",-1,1),new n("ием",18,1),new n("ом",-1,1),new n("ям",-1,1),new n("иям",21,1),new n("о",-1,1),new n("у",-1,1),new n("ах",-1,1),new n("ях",-1,1),new n("иях",26,1),new n("ы",-1,1),new n("ь",-1,1),new n("ю",-1,1),new n("ию",30,1),new n("ью",30,1),new n("я",-1,1),new n("ия",33,1),new n("ья",33,1)],F=[new n("ост",-1,1),new n("ость",-1,1)],q=[new n("ейше",-1,1),new n("н",-1,2),new n("ейш",-1,1),new n("ь",-1,3)],S=[33,65,8,232],W=new r;this.setCurrent=function(e){W.setCurrent(e)},this.getCurrent=function(){return W.getCurrent()},this.stem=function(){return w(),W.cursor=W.limit,!(W.cursor<b)&&(W.limit_backward=b,o()||(W.cursor=W.limit,f()||(W.cursor=W.limit),m()||(W.cursor=W.limit,l()||(W.cursor=W.limit,a()))),W.cursor=W.limit,W.ket=W.cursor,W.eq_s_b(1,"и"Line truncated
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.sa=function(){this.pipeline.reset(),this.pipeline.add(e.sa.trimmer,e.sa.stopWordFilter,e.sa.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.sa.stemmer))},e.sa.wordCharacters="ऀ-ःऄ-एऐ-टठ-यर-िी-ॏॐ-य़ॠ-९॰-ॿ꣠-꣱ꣲ-ꣷ꣸-ꣻ꣼-ꣽꣾ-ꣿᆰ0-ᆰ9",e.sa.trimmer=e.trimmerSupport.generateTrimmer(e.sa.wordCharacters),e.Pipeline.registerFunction(e.sa.trimmer,"trimmer-sa"),e.sa.stopWordFilter=e.generateStopWordFilter('तथा अयम् एकम् इत्यस्मिन् तथा तत् वा अयम् इत्यस्य ते आहूत उपरि तेषाम् किन्तु तेषाम् तदा इत्यनेन अधिकः इत्यस्य तत् केचन बहवः द्वि तथा महत्वपूर्णः अयम् अस्य विषये अयं अस्ति तत् प्रथमः विषये इत्युपरि इत्युपरि इतर अधिकतमः अधिकः अपि सामान्यतया ठ इतरेतर नूतनम् द न्यूनम् कश्चित् वा विशालः द सः अस्ति तदनुसारम् तत्र अस्ति केवलम् अपि अत्र सर्वे विविधाः तत् बहवः यतः इदानीम् द दक्षिण इत्यस्मै तस्य उपरि नथ अतीव कार्यम् सर्वे एकैकम् इत्यादि। एते सन्ति उत इत्थम् मध्ये एतदर्थं . स कस्य प्रथमः श्री. करोति अस्मिन् प्रकारः निर्मिता कालः तत्र कर्तुं समान अधुना ते सन्ति स एकः अस्ति सः अर्थात् तेषां कृते . स्थितम् विशेषः अग्रिम तेषाम् समान स्रोतः ख म समान इदानीमपि अधिकतया करोतु ते समान इत्यस्य वीथी सह यस्मिन् कृतवान् धृतः तदा पुनः पूर्वं सः आगतः किम् कुल इतर पुरा मात्रा स विषये उ अतएव अपि नगरस्य उपरि यतः प्रतिशतं कतरः कालः साधनानि भूत तथापि जात सम्बन्धि अन्यत् ग अतः अस्माकं स्वकीयाः अस्माकं इदानीं अन्तः इत्यादयः भवन्तः इत्यादयः एते एताः तस्य अस्य इदम् एते तेषां तेषां तेषां तान् तेषां तेषां तेषां समानः सः एकः च तादृशाः बहवः अन्ये च वदन्ति यत् कियत् कस्मै कस्मै यस्मै यस्मै यस्मै यस्मै न अतिनीचः किन्तु प्रथमं सम्पूर्णतया ततः चिरकालानन्तरं पुस्तकं सम्पूर्णतया अन्तः किन्तु अत्र वा इह इव श्रद्धाय अवशिष्यते परन्तु अन्ये वर्गाः सन्ति ते सन्ति शक्नुवन्ति सर्वे मिलित्वा सर्वे एकत्र"'.split(" ")),e.sa.stemmer=function(){return function(e){return"function"==typeof e.update?e.update(function(e){return e}):e}}();var r=e.wordcut;r.init(),e.sa.tokenizer=function(t){if(!arguments.length||null==t||void 0==t)return[];if(Array.isArray(t))return t.map(function(r){return isLunr2?new e.Token(r.toLowerCase()):r.toLowerCase()});var i=t.toString().toLowerCase().replace(/^\s+/,"");return r.cut(i).split("|")},e.Pipeline.registerFunction(e.sa.stemmer,"stemmer-sa"),e.Pipeline.registerFunction(e.sa.stopWordFilter,"stopWordFilter-sa")}});
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(r,t){"function"==typeof define&&define.amd?define(t):"object"==typeof exports?module.exports=t():t()(r.lunr)}(this,function(){return function(r){r.stemmerSupport={Among:function(r,t,i,s){if(this.toCharArray=function(r){for(var t=r.length,i=new Array(t),s=0;s<t;s++)i[s]=r.charCodeAt(s);return i},!r&&""!=r||!t&&0!=t||!i)throw"Bad Among initialisation: s:"+r+", substring_i: "+t+", result: "+i;this.s_size=r.length,this.s=this.toCharArray(r),this.substring_i=t,this.result=i,this.method=s},SnowballProgram:function(){var r;return{bra:0,ket:0,limit:0,cursor:0,limit_backward:0,setCurrent:function(t){r=t,this.cursor=0,this.limit=t.length,this.limit_backward=0,this.bra=this.cursor,this.ket=this.limit},getCurrent:function(){var t=r;return r=null,t},in_grouping:function(t,i,s){if(this.cursor<this.limit){var e=r.charCodeAt(this.cursor);if(e<=s&&e>=i&&(e-=i,t[e>>3]&1<<(7&e)))return this.cursor++,!0}return!1},in_grouping_b:function(t,i,s){if(this.cursor>this.limit_backward){var e=r.charCodeAt(this.cursor-1);if(e<=s&&e>=i&&(e-=i,t[e>>3]&1<<(7&e)))return this.cursor--,!0}return!1},out_grouping:function(t,i,s){if(this.cursor<this.limit){var e=r.charCodeAt(this.cursor);if(e>s||e<i)return this.cursor++,!0;if(e-=i,!(t[e>>3]&1<<(7&e)))return this.cursor++,!0}return!1},out_grouping_b:function(t,i,s){if(this.cursor>this.limit_backward){var e=r.charCodeAt(this.cursor-1);if(e>s||e<i)return this.cursor--,!0;if(e-=i,!(t[e>>3]&1<<(7&e)))return this.cursor--,!0}return!1},eq_s:function(t,i){if(this.limit-this.cursor<t)return!1;for(var s=0;s<t;s++)if(r.charCodeAt(this.cursor+s)!=i.charCodeAt(s))return!1;return this.cursor+=t,!0},eq_s_b:function(t,i){if(this.cursor-this.limit_backward<t)return!1;for(var s=0;s<t;s++)if(r.charCodeAt(this.cursor-t+s)!=i.charCodeAt(s))return!1;return this.cursor-=t,!0},find_among:function(t,i){for(var s=0,e=i,n=this.cursor,u=this.limit,o=0,h=0,c=!1;;){for(var a=s+(e-s>>1),f=0,l=o<h?o:h,_=t[a],m=l;m<_.s_size;m++){if(n+l==u){f=-1;break}if(f=r.charCodeAt(n+l)-_.s[m])break;l++}if(f<0?(e=a,h=l):(s=a,o=l),e-s<=1){if(s>0||e==s||c)break;c=!0}}for(;;){var _=t[s];if(o>=_.s_size){if(this.cursor=n+_.s_size,!_.method)return _.result;var b=_.method();if(this.cursor=n+_.s_size,b)return _.result}if((s=_.substring_i)<0)return 0}},find_among_b:function(t,i){for(var s=0,e=i,n=this.cursor,u=this.limit_backward,o=0,h=0,c=!1;;){for(var a=s+(e-s>>1),f=0,l=o<h?o:h,_=t[a],m=_.s_size-1-l;m>=0;m--){if(n-l==u){f=-1;break}if(f=r.charCodeAt(n-1-l)-_.s[m])break;l++}if(f<0?(e=a,h=l):(s=a,o=l),e-s<=1){if(s>0||e==s||c)break;c=!0}}for(;;){var _=t[s];if(o>=_.s_size){if(this.cursor=n-_.s_size,!_.method)return _.result;var b=_.method();if(this.cursor=n-_.s_size,b)return _.result}if((s=_.substring_i)<0)return 0}},replace_s:function(t,i,s){var e=s.length-(i-t),n=r.substring(0,t),u=r.substring(i);return r=n+s+u,this.limit+=e,this.cursor>=i?this.cursor+=e:this.cursor>t&&(this.cursor=t),e},slice_check:function(){if(this.bra<0||this.bra>this.ket||this.ket>this.limit||this.limit>r.length)throw"faulty slice operation"},slice_from:function(r){this.slice_check(),this.replace_s(this.bra,this.ket,r)},slice_del:function(){this.slice_from("")},insert:function(r,t,i){var s=this.replace_s(r,t,i);r<=this.bra&&(this.bra+=s),r<=this.ket&&(this.ket+=s)},slice_to:function(){return this.slice_check(),r.substring(this.bra,this.ket)},eq_v_b:function(r){return this.eq_s_b(r.length,r)}}}},r.trimmerSupport={generateTrimmer:function(r){var t=new RegExp("^[^"+r+"]+"),i=new RegExp("[^"+r+"]+$");return function(r){return"function"==typeof r.update?r.update(function(r){return r.replace(t,"").replace(i,"")}):r.replace(t,"").replace(i,"")}}}}});
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Swedish` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.sv=function(){this.pipeline.reset(),this.pipeline.add(e.sv.trimmer,e.sv.stopWordFilter,e.sv.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.sv.stemmer))},e.sv.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",e.sv.trimmer=e.trimmerSupport.generateTrimmer(e.sv.wordCharacters),e.Pipeline.registerFunction(e.sv.trimmer,"trimmer-sv"),e.sv.stemmer=function(){var r=e.stemmerSupport.Among,n=e.stemmerSupport.SnowballProgram,t=new function(){function e(){var e,r=w.cursor+3;if(o=w.limit,0<=r||r<=w.limit){for(a=r;;){if(e=w.cursor,w.in_grouping(l,97,246)){w.cursor=e;break}if(w.cursor=e,w.cursor>=w.limit)return;w.cursor++}for(;!w.out_grouping(l,97,246);){if(w.cursor>=w.limit)return;w.cursor++}o=w.cursor,o<a&&(o=a)}}function t(){var e,r=w.limit_backward;if(w.cursor>=o&&(w.limit_backward=o,w.cursor=w.limit,w.ket=w.cursor,e=w.find_among_b(u,37),w.limit_backward=r,e))switch(w.bra=w.cursor,e){case 1:w.slice_del();break;case 2:w.in_grouping_b(d,98,121)&&w.slice_del()}}function i(){var e=w.limit_backward;w.cursor>=o&&(w.limit_backward=o,w.cursor=w.limit,w.find_among_b(c,7)&&(w.cursor=w.limit,w.ket=w.cursor,w.cursor>w.limit_backward&&(w.bra=--w.cursor,w.slice_del())),w.limit_backward=e)}function s(){var e,r;if(w.cursor>=o){if(r=w.limit_backward,w.limit_backward=o,w.cursor=w.limit,w.ket=w.cursor,e=w.find_among_b(m,5))switch(w.bra=w.cursor,e){case 1:w.slice_del();break;case 2:w.slice_from("lös");break;case 3:w.slice_from("full")}w.limit_backward=r}}var a,o,u=[new r("a",-1,1),new r("arna",0,1),new r("erna",0,1),new r("heterna",2,1),new r("orna",0,1),new r("ad",-1,1),new r("e",-1,1),new r("ade",6,1),new r("ande",6,1),new r("arne",6,1),new r("are",6,1),new r("aste",6,1),new r("en",-1,1),new r("anden",12,1),new r("aren",12,1),new r("heten",12,1),new r("ern",-1,1),new r("ar",-1,1),new r("er",-1,1),new r("heter",18,1),new r("or",-1,1),new r("s",-1,2),new r("as",21,1),new r("arnas",22,1),new r("ernas",22,1),new r("ornas",22,1),new r("es",21,1),new r("ades",26,1),new r("andes",26,1),new r("ens",21,1),new r("arens",29,1),new r("hetens",29,1),new r("erns",21,1),new r("at",-1,1),new r("andet",-1,1),new r("het",-1,1),new r("ast",-1,1)],c=[new r("dd",-1,-1),new r("gd",-1,-1),new r("nn",-1,-1),new r("dt",-1,-1),new r("gt",-1,-1),new r("kt",-1,-1),new r("tt",-1,-1)],m=[new r("ig",-1,1),new r("lig",0,1),new r("els",-1,1),new r("fullt",-1,3),new r("löst",-1,2)],l=[17,65,16,1,0,0,0,0,0,0,0,0,0,0,0,0,24,0,32],d=[119,127,149],w=new n;this.setCurrent=function(e){w.setCurrent(e)},this.getCurrent=function(){return w.getCurrent()},this.stem=function(){var r=w.cursor;return e(),w.limit_backward=r,w.cursor=w.limit,t(),w.cursor=w.limit,i(),w.cursor=w.limit,s(),!0}};return function(e){return"function"==typeof e.update?e.update(function(e){return t.setCurrent(e),t.stem(),t.getCurrent()}):(t.setCurrent(e),t.stem(),t.getCurrent())}}(),e.Pipeline.registerFunction(e.sv.stemmer,"stemmer-sv"),e.sv.stopWordFilter=e.generateStopWordFilter("alla allt att av blev bli blir blivit de dem den denna deras dess dessa det detta dig din dina ditt du där då efter ej eller en er era ert ett från för ha hade han hans har henne hennes hon honom hur här i icke ingen inom inte jag ju kan kunde man med mellan men mig min mina mitt mot mycket ni nu när någon något några och om oss på samma sedan sig sin sina sitta själv skulle som så sådan sådana sådant till under upp ut utan vad var vara varför varit varje vars vart vem vi vid vilka vilkas vilken vilket vår våra vårt än är åt över".split(" ")),e.Pipeline.registerFunction(e.sv.stopWordFilter,"stopWordFilter-sv")}});
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,t){"function"==typeof define&&define.amd?define(t):"object"==typeof exports?module.exports=t():t()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.ta=function(){this.pipeline.reset(),this.pipeline.add(e.ta.trimmer,e.ta.stopWordFilter,e.ta.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.ta.stemmer))},e.ta.wordCharacters="-உஊ-ஏஐ-ஙச-ட-னப-யர-ஹ-ிீ-ொ-ௐ---௩௪-௯௰-௹௺-a-zA-Za-zA-Z0-90-9",e.ta.trimmer=e.trimmerSupport.generateTrimmer(e.ta.wordCharacters),e.Pipeline.registerFunction(e.ta.trimmer,"trimmer-ta"),e.ta.stopWordFilter=e.generateStopWordFilter("அங்கு அங்கே அது அதை அந்த அவர் அவர்கள் அவள் அவன் அவை ஆக ஆகவே ஆகையால் ஆதலால் ஆதலினால் ஆனாலும் ஆனால் இங்கு இங்கே இது இதை இந்த இப்படி இவர் இவர்கள் இவள் இவன் இவை இவ்வளவு உனக்கு உனது உன் உன்னால் எங்கு எங்கே எது எதை எந்த எப்படி எவர் எவர்கள் எவள் எவன் எவை எவ்வளவு எனக்கு எனது எனவே என் என்ன என்னால் ஏது ஏன் தனது தன்னால் தானே தான் நாங்கள் நாம் நான் நீ நீங்கள்".split(" ")),e.ta.stemmer=function(){return function(e){return"function"==typeof e.update?e.update(function(e){return e}):e}}();var t=e.wordcut;t.init(),e.ta.tokenizer=function(r){if(!arguments.length||null==r||void 0==r)return[];if(Array.isArray(r))return r.map(function(t){return isLunr2?new e.Token(t.toLowerCase()):t.toLowerCase()});var i=r.toString().toLowerCase().replace(/^\s+/,"");return t.cut(i).split("|")},e.Pipeline.registerFunction(e.ta.stemmer,"stemmer-ta"),e.Pipeline.registerFunction(e.ta.stopWordFilter,"stopWordFilter-ta")}});
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,t){"function"==typeof define&&define.amd?define(t):"object"==typeof exports?module.exports=t():t()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.te=function(){this.pipeline.reset(),this.pipeline.add(e.te.trimmer,e.te.stopWordFilter,e.te.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(e.te.stemmer))},e.te.wordCharacters="ఀ-ఄఅ-ఔక-హా-ౌౕ-ౖౘ-ౚౠ-ౡౢ-ౣ౦-౯౸-౿఼ఽ్ౝ౷",e.te.trimmer=e.trimmerSupport.generateTrimmer(e.te.wordCharacters),e.Pipeline.registerFunction(e.te.trimmer,"trimmer-te"),e.te.stopWordFilter=e.generateStopWordFilter("అందరూ అందుబాటులో అడగండి అడగడం అడ్డంగా అనుగుణంగా అనుమతించు అనుమతిస్తుంది అయితే ఇప్పటికే ఉన్నారు ఎక్కడైనా ఎప్పుడు ఎవరైనా ఎవరో ఏ ఏదైనా ఏమైనప్పటికి ఒక ఒకరు కనిపిస్తాయి కాదు కూడా గా గురించి చుట్టూ చేయగలిగింది తగిన తర్వాత దాదాపు దూరంగా నిజంగా పై ప్రకారం ప్రక్కన మధ్య మరియు మరొక మళ్ళీ మాత్రమే మెచ్చుకో వద్ద వెంట వేరుగా వ్యతిరేకంగా సంబంధం".split(" ")),e.te.stemmer=function(){return function(e){return"function"==typeof e.update?e.update(function(e){return e}):e}}();var t=e.wordcut;t.init(),e.te.tokenizer=function(r){if(!arguments.length||null==r||void 0==r)return[];if(Array.isArray(r))return r.map(function(t){return isLunr2?new e.Token(t.toLowerCase()):t.toLowerCase()});var i=r.toString().toLowerCase().replace(/^\s+/,"");return t.cut(i).split("|")},e.Pipeline.registerFunction(e.te.stemmer,"stemmer-te"),e.Pipeline.registerFunction(e.te.stopWordFilter,"stopWordFilter-te")}});
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");var r="2"==e.version[0];e.th=function(){this.pipeline.reset(),this.pipeline.add(e.th.trimmer),r?this.tokenizer=e.th.tokenizer:(e.tokenizer&&(e.tokenizer=e.th.tokenizer),this.tokenizerFn&&(this.tokenizerFn=e.th.tokenizer))},e.th.wordCharacters="[-]",e.th.trimmer=e.trimmerSupport.generateTrimmer(e.th.wordCharacters),e.Pipeline.registerFunction(e.th.trimmer,"trimmer-th");var t=e.wordcut;t.init(),e.th.tokenizer=function(i){if(!arguments.length||null==i||void 0==i)return[];if(Array.isArray(i))return i.map(function(t){return r?new e.Token(t):t});var n=i.toString().replace(/^\s+/,"");return t.cut(n).split("|")}}});
|
||||||
@@ -0,0 +1,18 @@
|
|||||||
|
/*!
|
||||||
|
* Lunr languages, `Turkish` language
|
||||||
|
* https://github.com/MihaiValentin/lunr-languages
|
||||||
|
*
|
||||||
|
* Copyright 2014, Mihai Valentin
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
/*!
|
||||||
|
* based on
|
||||||
|
* Snowball JavaScript Library v0.3
|
||||||
|
* http://code.google.com/p/urim/
|
||||||
|
* http://snowball.tartarus.org/
|
||||||
|
*
|
||||||
|
* Copyright 2010, Oleg Mazko
|
||||||
|
* http://www.mozilla.org/MPL/
|
||||||
|
*/
|
||||||
|
|
||||||
|
!function(r,i){"function"==typeof define&&define.amd?define(i):"object"==typeof exports?module.exports=i():i()(r.lunr)}(this,function(){return function(r){if(void 0===r)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===r.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");r.tr=function(){this.pipeline.reset(),this.pipeline.add(r.tr.trimmer,r.tr.stopWordFilter,r.tr.stemmer),this.searchPipeline&&(this.searchPipeline.reset(),this.searchPipeline.add(r.tr.stemmer))},r.tr.wordCharacters="A-Za-zªºÀ-ÖØ-öø-ʸˠ-ˤᴀ-ᴥᴬ-ᵜᵢ-ᵥᵫ-ᵷᵹ-ᶾḀ-ỿⁱⁿₐ-ₜKÅℲⅎⅠ-ↈⱠ-ⱿꜢ-ꞇꞋ-ꞭꞰ-ꞷꟷ-ꟿꬰ-ꭚꭜ-ꭤff-stA-Za-z",r.tr.trimmer=r.trimmerSupport.generateTrimmer(r.tr.wordCharacters),r.Pipeline.registerFunction(r.tr.trimmer,"trimmer-tr"),r.tr.stemmer=function(){var i=r.stemmerSupport.Among,e=r.stemmerSupport.SnowballProgram,n=new function(){function r(r,i,e){for(;;){var n=Dr.limit-Dr.cursor;if(Dr.in_grouping_b(r,i,e)){Dr.cursor=Dr.limit-n;break}if(Dr.cursor=Dr.limit-n,Dr.cursor<=Dr.limit_backward)return!1;Dr.cursor--}return!0}function n(){var i,e;i=Dr.limit-Dr.cursor,r(Wr,97,305);for(var n=0;n<Br.length;n++){e=Dr.limit-Dr.cursor;var t=Br[n];if(Dr.eq_s_b(1,t[0])&&r(t[1],t[2],t[3]))return Dr.cursor=Dr.limit-i,!0;Dr.cursor=Dr.limit-e}return Dr.cursor=Dr.limit-e,!(!Dr.eq_s_b(1,"ü")||!r(Zr,246,252))&&(Dr.cursor=Dr.limit-i,!0)}function t(r,i){var e,n=Dr.limit-Dr.cursor;return r()&&(Dr.cursor=Dr.limit-n,Dr.cursor>Dr.limit_backward&&(Dr.cursor--,e=Dr.limit-Dr.cursor,i()))?(Dr.cursor=Dr.limit-e,!0):(Dr.cursor=Dr.limit-n,r()?(Dr.cursor=Dr.limit-n,!1):(Dr.cursor=Dr.limit-n,!(Dr.cursor<=Dr.limit_backward)&&(Dr.cursor--,!!i()&&(Dr.cursor=Dr.limit-n,!0))))}function u(r){return t(r,function(){return Dr.in_grouping_b(Wr,97,305)})}function o(){return u(function(){return Dr.eq_s_b(1,"n")})}function s(){return u(function(){return Dr.eq_s_b(1,"s")})}function c(){return u(function(){return Dr.eq_s_b(1,"y")})}function l(){return t(function(){return Dr.in_grouping_b(Lr,105,305)},function(){return Dr.out_grouping_b(Wr,97,305)})}function a(){return Dr.find_among_b(ur,10)&&l()}function m(){return n()&&Dr.in_grouping_b(Lr,105,305)&&s()}function d(){return Dr.find_among_b(or,2)}function f(){return n()&&Dr.in_grouping_b(Lr,105,305)&&c()}function b(){return n()&&Dr.find_among_b(sr,4)}function w(){return n()&&Dr.find_among_b(cr,4)&&o()}function _(){return n()&&Dr.find_among_b(lr,2)&&c()}function k(){return n()&&Dr.find_among_b(ar,2)}function p(){return n()&&Dr.find_among_b(mr,4)}function g(){return n()&&Dr.find_among_b(dr,2)}function y(){return n()&&Dr.find_among_b(fr,4)}function z(){return n()&&Dr.find_among_b(br,2)}function v(){return n()&&Dr.find_among_b(wr,2)&&c()}function h(){return Dr.eq_s_b(2,"ki")}function q(){return n()&&Dr.find_among_b(_r,2)&&o()}function C(){return n()&&Dr.find_among_b(kr,4)&&c()}function P(){return n()&&Dr.find_among_b(pr,4)}function F(){return n()&&Dr.find_among_b(gr,4)&&c()}function S(){return Dr.find_among_b(yr,4)}function W(){return n()&&Dr.find_among_b(zr,2)}function L(){return n()&&Dr.find_among_b(vr,4)}function x(){return n()&&Dr.find_among_b(hr,8)}function A(){return Dr.find_among_b(qr,2)}function E(){return n()&&Dr.find_among_b(Cr,32)&&c()}function j(){return Dr.find_among_b(Pr,8)&&c()}function T(){return n()&&Dr.find_among_b(Fr,4)&&c()}function Z(){return Dr.eq_s_b(3,"ken")&&c()}function B(){var r=Dr.limit-Dr.cursor;return!(T()||(Dr.cursor=Dr.limit-r,E()||(Dr.cursor=Dr.limit-r,j()||(Dr.cursor=Dr.limit-r,Z()))))}function D(){if(A()){var r=Dr.limit-Dr.cursor;if(S()||(Dr.cursor=Dr.limit-r,W()||(Dr.cursor=Dr.limit-r,C()||(Dr.cursor=Dr.limit-r,P()||(Dr.cursor=Dr.limit-r,F()||(Dr.cursor=Dr.limit-r))))),T())return!1}return!0}function G(){if(W()){Dr.bra=Dr.cursor,Dr.slice_del();var r=Dr.limit-Dr.cursor;return Dr.ket=Dr.cursor,x()||(Dr.cursor=Dr.limit-r,E()||(Dr.cursor=Dr.limit-r,j()||(Dr.cursor=Dr.limit-r,T()||(Dr.cursor=Dr.limit-r)))),nr=!1,!1}return!0}function H(){if(!L())return!0;var r=Dr.limit-Dr.cursor;return!E()&&(Dr.cursor=Dr.limit-r,!j())}function I(){var r,i=Dr.limit-Dr.cursor;return!(S()||(Dr.cursor=Dr.limit-i,F()||(Dr.cursor=Dr.limit-i,P()||(Dr.cursor=Dr.limit-i,C()))))||(Dr.bra=Dr.cursor,Dr.slice_del(),r=Dr.limit-Dr.cursor,Dr.ket=Dr.cursor,T()||(Dr.cursor=Dr.limit-r),!1)}function J(){var r,i=Dr.limit-Dr.cursor;if(Dr.ket=Dr.cursor,nr=!0,B()&&(Dr.cursor=Dr.limit-i,D()&&(Dr.cursor=Dr.limit-i,G()&&(Dr.cursor=Dr.limit-i,H()&&(Dr.cursor=Dr.limit-i,I()))))){if(Dr.cursor=Dr.limit-i,!x())return;Dr.bra=Dr.cursor,Dr.slice_del(),Dr.ket=Dr.cursor,r=Dr.limit-Dr.cursor,S()||(Dr.cursor=Dr.limit-r,W()||(Dr.cursor=Dr.limit-r,C()||(Dr.cursor=Dr.limit-r,P()||(Dr.cursor=Dr.limit-r,F()||(Dr.cursor=Dr.limit-r))))),T()||(Dr.cursor=Dr.limit-r)}Dr.bra=Dr.cursor,Dr.slice_del()}function K(){var r,i,e,n;if(Dr.ket=Dr.cursor,h()){if(r=Dr.limit-Dr.cursorLine truncated
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r():r()(e.lunr)}(this,function(){return function(e){if(void 0===e)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===e.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");e.vi=function(){this.pipeline.reset(),this.pipeline.add(e.vi.stopWordFilter,e.vi.trimmer)},e.vi.wordCharacters="[A-Za-ẓ̀͐́͑̉̃̓ÂâÊêÔôĂ-ăĐ-đƠ-ơƯ-ư]",e.vi.trimmer=e.trimmerSupport.generateTrimmer(e.vi.wordCharacters),e.Pipeline.registerFunction(e.vi.trimmer,"trimmer-vi"),e.vi.stopWordFilter=e.generateStopWordFilter("là cái nhưng mà".split(" "))}});
|
||||||
@@ -0,0 +1 @@
|
|||||||
|
!function(e,r){"function"==typeof define&&define.amd?define(r):"object"==typeof exports?module.exports=r(require("@node-rs/jieba")):r()(e.lunr)}(this,function(e){return function(r,t){if(void 0===r)throw new Error("Lunr is not present. Please include / require Lunr before this script.");if(void 0===r.stemmerSupport)throw new Error("Lunr stemmer support is not present. Please include / require Lunr stemmer support before this script.");var i="2"==r.version[0];r.zh=function(){this.pipeline.reset(),this.pipeline.add(r.zh.trimmer,r.zh.stopWordFilter,r.zh.stemmer),i?this.tokenizer=r.zh.tokenizer:(r.tokenizer&&(r.tokenizer=r.zh.tokenizer),this.tokenizerFn&&(this.tokenizerFn=r.zh.tokenizer))},r.zh.tokenizer=function(n){if(!arguments.length||null==n||void 0==n)return[];if(Array.isArray(n))return n.map(function(e){return i?new r.Token(e.toLowerCase()):e.toLowerCase()});t&&e.load(t);var o=n.toString().trim().toLowerCase(),s=[];e.cut(o,!0).forEach(function(e){s=s.concat(e.split(" "))}),s=s.filter(function(e){return!!e});var u=0;return s.map(function(e,t){if(i){var n=o.indexOf(e,u),s={};return s.position=[n,e.length],s.index=t,u=n,new r.Token(e,s)}return e})},r.zh.wordCharacters="\\w一-龥",r.zh.trimmer=r.trimmerSupport.generateTrimmer(r.zh.wordCharacters),r.Pipeline.registerFunction(r.zh.trimmer,"trimmer-zh"),r.zh.stemmer=function(){return function(e){return e}}(),r.Pipeline.registerFunction(r.zh.stemmer,"stemmer-zh"),r.zh.stopWordFilter=r.generateStopWordFilter("的 一 不 在 人 有 是 为 為 以 于 於 上 他 而 后 後 之 来 來 及 了 因 下 可 到 由 这 這 与 與 也 此 但 并 並 个 個 其 已 无 無 小 我 们 們 起 最 再 今 去 好 只 又 或 很 亦 某 把 那 你 乃 它 吧 被 比 别 趁 当 當 从 從 得 打 凡 儿 兒 尔 爾 该 該 各 给 給 跟 和 何 还 還 即 几 幾 既 看 据 據 距 靠 啦 另 么 麽 每 嘛 拿 哪 您 凭 憑 且 却 卻 让 讓 仍 啥 如 若 使 谁 誰 虽 雖 随 隨 同 所 她 哇 嗡 往 些 向 沿 哟 喲 用 咱 则 則 怎 曾 至 致 着 著 诸 諸 自".split(" ")),r.Pipeline.registerFunction(r.zh.stopWordFilter,"stopWordFilter-zh")}});
|
||||||
@@ -0,0 +1,206 @@
|
|||||||
|
/**
|
||||||
|
* export the module via AMD, CommonJS or as a browser global
|
||||||
|
* Export code from https://github.com/umdjs/umd/blob/master/returnExports.js
|
||||||
|
*/
|
||||||
|
;(function (root, factory) {
|
||||||
|
if (typeof define === 'function' && define.amd) {
|
||||||
|
// AMD. Register as an anonymous module.
|
||||||
|
define(factory)
|
||||||
|
} else if (typeof exports === 'object') {
|
||||||
|
/**
|
||||||
|
* Node. Does not work with strict CommonJS, but
|
||||||
|
* only CommonJS-like environments that support module.exports,
|
||||||
|
* like Node.
|
||||||
|
*/
|
||||||
|
module.exports = factory()
|
||||||
|
} else {
|
||||||
|
// Browser globals (root is window)
|
||||||
|
factory()(root.lunr);
|
||||||
|
}
|
||||||
|
}(this, function () {
|
||||||
|
/**
|
||||||
|
* Just return a value to define the module export.
|
||||||
|
* This example returns an object, but the module
|
||||||
|
* can return a function as the exported value.
|
||||||
|
*/
|
||||||
|
|
||||||
|
return function(lunr) {
|
||||||
|
// TinySegmenter 0.1 -- Super compact Japanese tokenizer in Javascript
|
||||||
|
// (c) 2008 Taku Kudo <taku@chasen.org>
|
||||||
|
// TinySegmenter is freely distributable under the terms of a new BSD licence.
|
||||||
|
// For details, see http://chasen.org/~taku/software/TinySegmenter/LICENCE.txt
|
||||||
|
|
||||||
|
function TinySegmenter() {
|
||||||
|
var patterns = {
|
||||||
|
"[一二三四五六七八九十百千万億兆]":"M",
|
||||||
|
"[一-龠々〆ヵヶ]":"H",
|
||||||
|
"[ぁ-ん]":"I",
|
||||||
|
"[ァ-ヴーア-ン゙ー]":"K",
|
||||||
|
"[a-zA-Za-zA-Z]":"A",
|
||||||
|
"[0-90-9]":"N"
|
||||||
|
}
|
||||||
|
this.chartype_ = [];
|
||||||
|
for (var i in patterns) {
|
||||||
|
var regexp = new RegExp(i);
|
||||||
|
this.chartype_.push([regexp, patterns[i]]);
|
||||||
|
}
|
||||||
|
|
||||||
|
this.BIAS__ = -332
|
||||||
|
this.BC1__ = {"HH":6,"II":2461,"KH":406,"OH":-1378};
|
||||||
|
this.BC2__ = {"AA":-3267,"AI":2744,"AN":-878,"HH":-4070,"HM":-1711,"HN":4012,"HO":3761,"IA":1327,"IH":-1184,"II":-1332,"IK":1721,"IO":5492,"KI":3831,"KK":-8741,"MH":-3132,"MK":3334,"OO":-2920};
|
||||||
|
this.BC3__ = {"HH":996,"HI":626,"HK":-721,"HN":-1307,"HO":-836,"IH":-301,"KK":2762,"MK":1079,"MM":4034,"OA":-1652,"OH":266};
|
||||||
|
this.BP1__ = {"BB":295,"OB":304,"OO":-125,"UB":352};
|
||||||
|
this.BP2__ = {"BO":60,"OO":-1762};
|
||||||
|
this.BQ1__ = {"BHH":1150,"BHM":1521,"BII":-1158,"BIM":886,"BMH":1208,"BNH":449,"BOH":-91,"BOO":-2597,"OHI":451,"OIH":-296,"OKA":1851,"OKH":-1020,"OKK":904,"OOO":2965};
|
||||||
|
this.BQ2__ = {"BHH":118,"BHI":-1159,"BHM":466,"BIH":-919,"BKK":-1720,"BKO":864,"OHH":-1139,"OHM":-181,"OIH":153,"UHI":-1146};
|
||||||
|
this.BQ3__ = {"BHH":-792,"BHI":2664,"BII":-299,"BKI":419,"BMH":937,"BMM":8335,"BNN":998,"BOH":775,"OHH":2174,"OHM":439,"OII":280,"OKH":1798,"OKI":-793,"OKO":-2242,"OMH":-2402,"OOO":11699};
|
||||||
|
this.BQ4__ = {"BHH":-3895,"BIH":3761,"BII":-4654,"BIK":1348,"BKK":-1806,"BMI":-3385,"BOO":-12396,"OAH":926,"OHH":266,"OHK":-2036,"ONN":-973};
|
||||||
|
this.BW1__ = {",と":660,",同":727,"B1あ":1404,"B1同":542,"、と":660,"、同":727,"」と":1682,"あっ":1505,"いう":1743,"いっ":-2055,"いる":672,"うし":-4817,"うん":665,"から":3472,"がら":600,"こう":-790,"こと":2083,"こん":-1262,"さら":-4143,"さん":4573,"した":2641,"して":1104,"すで":-3399,"そこ":1977,"それ":-871,"たち":1122,"ため":601,"った":3463,"つい":-802,"てい":805,"てき":1249,"でき":1127,"です":3445,"では":844,"とい":-4915,"とみ":1922,"どこ":3887,"ない":5713,"なっ":3015,"など":7379,"なん":-1113,"にし":2468,"には":1498,"にも":1671,"に対":-912,"の一":-501,"の中":741,"ませ":2448,"まで":1711,"まま":2600,"まる":-2155,"やむ":-1947,"よっ":-2565,"れた":2369,"れで":-913,"をし":1860,"を見":731,"亡く":-1886,"京都":2558,"取り":-2784,"大き":-2604,"大阪":1497,"平方":-2314,"引き":-1336,"日本":-195,"本当":-2423,"毎日":-2113,"目指":-724,"B1あ":1404,"B1同":542,"」と":1682};
|
||||||
|
this.BW2__ = {"..":-11822,"11":-669,"――":-5730,"−−":-13175,"いう":-1609,"うか":2490,"かし":-1350,"かも":-602,"から":-7194,"かれ":4612,"がい":853,"がら":-3198,"きた":1941,"くな":-1597,"こと":-8392,"この":-4193,"させ":4533,"され":13168,"さん":-3977,"しい":-1819,"しか":-545,"した":5078,"して":972,"しな":939,"その":-3744,"たい":-1253,"たた":-662,"ただ":-3857,"たち":-786,"たと":1224,"たは":-939,"った":4589,"って":1647,"っと":-2094,"てい":6144,"てき":3640,"てく":2551,"ては":-3110,"ても":-3065,"でい":2666,"でき":-1528,"でし":-3828,"です":-4761,"でも":-4203,"とい":1890,"とこ":-1746,"とと":-2279,"との":720,"とみ":5168,"とも":-3941,"ない":-2488,"なが":-1313,"など":-6509,"なの":2614,"なん":3099,"にお":-1615,"にし":2748,"にな":2454,"によ":-7236,"に対":-14943,"に従":-4688,"に関":-11388,"のか":2093,"ので":-7059,"のに":-6041,"のの":-6125,"はい":1073,"はが":-1033,"はず":-2532,"ばれ":1813,"まし":-1316,"まで":-6621,"まれ":5409,"めて":-3153,"もい":2230,"もの":-10713,"らか":-944,"らし":-1611,"らに":-1897,"りし":651,"りま":1620,"れた":4270,"れて":849,"れば":4114,"ろう":6067,"われ":7901,"を通":-11877,"んだ":728,"んな":-4115,"一人":602,"一方":-1375,"一日":970,"一部":-1051,"上が":-4479,"会社":-1116,"出て":2163,"分の":-7758,"同党":970,"同日":-913,"大阪":-2471,"委員":-1250,"少な":-1050,"年度":-8669,"年間":-1626,"府県":-2363,"手権":-1982,"新聞":-4066,"日新":-722,"日本":-7068,"日米":3372,"曜日":-601,"朝鮮":-2355,"本人":-2697,"東京":-1543,"然と":-1384,"社会":-1276,"立て":-990,"第に":-1612,"米国":-4268,"11":-669};
|
||||||
|
this.BW3__ = {"あた":-2194,"あり":719,"ある":3846,"い.":-1185,"い。":-1185,"いい":5308,"いえ":2079,"いく":3029,"いた":2056,"いっ":1883,"いる":5600,"いわ":1527,"うち":1117,"うと":4798,"えと":1454,"か.":2857,"か。":2857,"かけ":-743,"かっ":-4098,"かに":-669,"から":6520,"かり":-2670,"が,":1816,"が、":1816,"がき":-4855,"がけ":-1127,"がっ":-913,"がら":-4977,"がり":-2064,"きた":1645,"けど":1374,"こと":7397,"この":1542,"ころ":-2757,"さい":-714,"さを":976,"し,":1557,"し、":1557,"しい":-3714,"した":3562,"して":1449,"しな":2608,"しま":1200,"す.":-1310,"す。":-1310,"する":6521,"ず,":3426,"ず、":3426,"ずに":841,"そう":428,"た.":8875,"た。":8875,"たい":-594,"たの":812,"たり":-1183,"たる":-853,"だ.":4098,"だ。":4098,"だっ":1004,"った":-4748,"って":300,"てい":6240,"てお":855,"ても":302,"です":1437,"でに":-1482,"では":2295,"とう":-1387,"とし":2266,"との":541,"とも":-3543,"どう":4664,"ない":1796,"なく":-903,"など":2135,"に,":-1021,"に、":-1021,"にし":1771,"にな":1906,"には":2644,"の,":-724,"の、":-724,"の子":-1000,"は,":1337,"は、":1337,"べき":2181,"まし":1113,"ます":6943,"まっ":-1549,"まで":6154,"まれ":-793,"らし":1479,"られ":6820,"るる":3818,"れ,":854,"れ、":854,"れた":1850,"れて":1375,"れば":-3246,"れる":1091,"われ":-605,"んだ":606,"んで":798,"カ月":990,"会議":860,"入り":1232,"大会":2217,"始め":1681,"市":965,"新聞":-5055,"日,":974,"日、":974,"社会":2024,"カ月":990};
|
||||||
|
this.TC1__ = {"AAA":1093,"HHH":1029,"HHM":580,"HII":998,"HOH":-390,"HOM":-331,"IHI":1169,"IOH":-142,"IOI":-1015,"IOM":467,"MMH":187,"OOI":-1832};
|
||||||
|
this.TC2__ = {"HHO":2088,"HII":-1023,"HMM":-1154,"IHI":-1965,"KKH":703,"OII":-2649};
|
||||||
|
this.TC3__ = {"AAA":-294,"HHH":346,"HHI":-341,"HII":-1088,"HIK":731,"HOH":-1486,"IHH":128,"IHI":-3041,"IHO":-1935,"IIH":-825,"IIM":-1035,"IOI":-542,"KHH":-1216,"KKA":491,"KKH":-1217,"KOK":-1009,"MHH":-2694,"MHM":-457,"MHO":123,"MMH":-471,"NNH":-1689,"NNO":662,"OHO":-3393};
|
||||||
|
this.TC4__ = {"HHH":-203,"HHI":1344,"HHK":365,"HHM":-122,"HHN":182,"HHO":669,"HIH":804,"HII":679,"HOH":446,"IHH":695,"IHO":-2324,"IIH":321,"III":1497,"IIO":656,"IOO":54,"KAK":4845,"KKA":3386,"KKK":3065,"MHH":-405,"MHI":201,"MMH":-241,"MMM":661,"MOM":841};
|
||||||
|
this.TQ1__ = {"BHHH":-227,"BHHI":316,"BHIH":-132,"BIHH":60,"BIII":1595,"BNHH":-744,"BOHH":225,"BOOO":-908,"OAKK":482,"OHHH":281,"OHIH":249,"OIHI":200,"OIIH":-68};
|
||||||
|
this.TQ2__ = {"BIHH":-1401,"BIII":-1033,"BKAK":-543,"BOOO":-5591};
|
||||||
|
this.TQ3__ = {"BHHH":478,"BHHM":-1073,"BHIH":222,"BHII":-504,"BIIH":-116,"BIII":-105,"BMHI":-863,"BMHM":-464,"BOMH":620,"OHHH":346,"OHHI":1729,"OHII":997,"OHMH":481,"OIHH":623,"OIIH":1344,"OKAK":2792,"OKHH":587,"OKKA":679,"OOHH":110,"OOII":-685};
|
||||||
|
this.TQ4__ = {"BHHH":-721,"BHHM":-3604,"BHII":-966,"BIIH":-607,"BIII":-2181,"OAAA":-2763,"OAKK":180,"OHHH":-294,"OHHI":2446,"OHHO":480,"OHIH":-1573,"OIHH":1935,"OIHI":-493,"OIIH":626,"OIII":-4007,"OKAK":-8156};
|
||||||
|
this.TW1__ = {"につい":-4681,"東京都":2026};
|
||||||
|
this.TW2__ = {"ある程":-2049,"いった":-1256,"ころが":-2434,"しょう":3873,"その後":-4430,"だって":-1049,"ていた":1833,"として":-4657,"ともに":-4517,"もので":1882,"一気に":-792,"初めて":-1512,"同時に":-8097,"大きな":-1255,"対して":-2721,"社会党":-3216};
|
||||||
|
this.TW3__ = {"いただ":-1734,"してい":1314,"として":-4314,"につい":-5483,"にとっ":-5989,"に当た":-6247,"ので,":-727,"ので、":-727,"のもの":-600,"れから":-3752,"十二月":-2287};
|
||||||
|
this.TW4__ = {"いう.":8576,"いう。":8576,"からな":-2348,"してい":2958,"たが,":1516,"たが、":1516,"ている":1538,"という":1349,"ました":5543,"ません":1097,"ようと":-4258,"よると":5865};
|
||||||
|
this.UC1__ = {"A":484,"K":93,"M":645,"O":-505};
|
||||||
|
this.UC2__ = {"A":819,"H":1059,"I":409,"M":3987,"N":5775,"O":646};
|
||||||
|
this.UC3__ = {"A":-1370,"I":2311};
|
||||||
|
this.UC4__ = {"A":-2643,"H":1809,"I":-1032,"K":-3450,"M":3565,"N":3876,"O":6646};
|
||||||
|
this.UC5__ = {"H":313,"I":-1238,"K":-799,"M":539,"O":-831};
|
||||||
|
this.UC6__ = {"H":-506,"I":-253,"K":87,"M":247,"O":-387};
|
||||||
|
this.UP1__ = {"O":-214};
|
||||||
|
this.UP2__ = {"B":69,"O":935};
|
||||||
|
this.UP3__ = {"B":189};
|
||||||
|
this.UQ1__ = {"BH":21,"BI":-12,"BK":-99,"BN":142,"BO":-56,"OH":-95,"OI":477,"OK":410,"OO":-2422};
|
||||||
|
this.UQ2__ = {"BH":216,"BI":113,"OK":1759};
|
||||||
|
this.UQ3__ = {"BA":-479,"BH":42,"BI":1913,"BK":-7198,"BM":3160,"BN":6427,"BO":14761,"OI":-827,"ON":-3212};
|
||||||
|
this.UW1__ = {",":156,"、":156,"「":-463,"あ":-941,"う":-127,"が":-553,"き":121,"こ":505,"で":-201,"と":-547,"ど":-123,"に":-789,"の":-185,"は":-847,"も":-466,"や":-470,"よ":182,"ら":-292,"り":208,"れ":169,"を":-446,"ん":-137,"・":-135,"主":-402,"京":-268,"区":-912,"午":871,"国":-460,"大":561,"委":729,"市":-411,"日":-141,"理":361,"生":-408,"県":-386,"都":-718,"「":-463,"・":-135};
|
||||||
|
this.UW2__ = {",":-829,"、":-829,"〇":892,"「":-645,"」":3145,"あ":-538,"い":505,"う":134,"お":-502,"か":1454,"が":-856,"く":-412,"こ":1141,"さ":878,"ざ":540,"し":1529,"す":-675,"せ":300,"そ":-1011,"た":188,"だ":1837,"つ":-949,"て":-291,"で":-268,"と":-981,"ど":1273,"な":1063,"に":-1764,"の":130,"は":-409,"ひ":-1273,"べ":1261,"ま":600,"も":-1263,"や":-402,"よ":1639,"り":-579,"る":-694,"れ":571,"を":-2516,"ん":2095,"ア":-587,"カ":306,"キ":568,"ッ":831,"三":-758,"不":-2150,"世":-302,"中":-968,"主":-861,"事":492,"人":-123,"会":978,"保":362,"入":548,"初":-3025,"副":-1566,"北":-3414,"区":-422,"大":-1769,"天":-865,"太":-483,"子":-1519,"学":760,"実":1023,"小":-2009,"市":-813,"年":-1060,"強":1067,"手":-1519,"揺":-1033,"政":1522,"文":-1355,"新":-1682,"日":-1815,"明":-1462,"最":-630,"朝":-1843,"本":-1650,"東":-931,"果":-665,"次":-2378,"民":-180,"気":-1740,"理":752,"発":529,"目":-1584,"相":-242,"県":-1165,"立":-763,"第":810,"米":509,"自":-1353,"行":838,"西":-744,"見":-3874,"調":1010,"議":1198,"込":3041,"開":1758,"間":-1257,"「":-645,"」":3145,"ッ":831,"ア":-587,"カ":306,"キ":568};
|
||||||
|
this.UW3__ = {",":4889,"1":-800,"−":-1723,"、":4889,"々":-2311,"〇":5827,"」":2670,"〓":-3573,"あ":-2696,"い":1006,"う":2342,"え":1983,"お":-4864,"か":-1163,"が":3271,"く":1004,"け":388,"げ":401,"こ":-3552,"ご":-3116,"さ":-1058,"し":-395,"す":584,"せ":3685,"そ":-5228,"た":842,"ち":-521,"っ":-1444,"つ":-1081,"て":6167,"で":2318,"と":1691,"ど":-899,"な":-2788,"に":2745,"の":4056,"は":4555,"ひ":-2171,"ふ":-1798,"へ":1199,"ほ":-5516,"ま":-4384,"み":-120,"め":1205,"も":2323,"や":-788,"よ":-202,"ら":727,"り":649,"る":5905,"れ":2773,"わ":-1207,"を":6620,"ん":-518,"ア":551,"グ":1319,"ス":874,"ッ":-1350,"ト":521,"ム":1109,"ル":1591,"ロ":2201,"ン":278,"・":-3794,"一":-1619,"下":-1759,"世":-2087,"両":3815,"中":653,"主":-758,"予":-1193,"二":974,"人":2742,"今":792,"他":1889,"以":-1368,"低":811,"何":4265,"作":-361,"保":-2439,"元":4858,"党":3593,"全":1574,"公":-3030,"六":755,"共":-1880,"円":5807,"再":3095,"分":457,"初":2475,"別":1129,"前":2286,"副":4437,"力":365,"動":-949,"務":-1872,"化":1327,"北":-1038,"区":4646,"千":-2309,"午":-783,"協":-1006,"口":483,"右":1233,"各":3588,"合":-241,"同":3906,"和":-837,"員":4513,"国":642,"型":1389,"場":1219,"外":-241,"妻":2016,"学":-1356,"安":-423,"実":-1008,"家":1078,"小":-513,"少":-3102,"州":1155,"市":3197,"平":-1804,"年":2416,"広":-1030,"府":1605,"度":1452,"建":-2352,"当":-3885,"得":1905,"思":-1291,"性":1822,"戸":-488,"指":-3973,"政":-2013,"教":-1479,"数":3222,"文":-1489,"新":1764,"日":2099,"旧":5792,"昨":-661,"時":-1248,"曜":-951,"最":-937,"月":4125,"期":360,"李":3094,"村":364,"東":-805,"核":5156,"森":2438,"業":484,"氏":2613,"民":-1694,"決":-1073,"法":1868,"海":-495,"無":979,"物":461,"特":-3850,"生":-273,"用":914,"町":1215,"的":7313,"直":-1835,"省":792,"県":6293,"知":-1528,"私":4231,"税":401,"立":-960,"第":1201,"米":7767,"系":3066,"約":3663,"級":1384,"統":-4229,"総":1163,"線":1255,"者":6457,"能":725,"自":-2869,"英":785,"見":1044,"調":-562,"財":-733,"費":1777,"車":1835,"軍":1375,"込":-1504,"通":-1136,"選":-681,"郎":1026,"郡":4404,"部":1200,"金":2163,"長":421,"開":-1432,"間":1302,"関":-1282,"雨":2009,"電":-1045,"非":2066,"駅":1620,"1":-800,"」":2670,"・":-3794,"ッ":-1350,"ア":551,"グ":1319,"ス":874,"ト":521,"ム":1109,"ル":1591,"ロ":2201,"ン":278};
|
||||||
|
this.UW4__ = {",":3930,".":3508,"―":-4841,"、":3930,"。":3508,"〇":4999,"「":1895,"」":3798,"〓":-5156,"あ":4752,"い":-3435,"う":-640,"え":-2514,"お":2405,"か":530,"が":6006,"き":-4482,"ぎ":-3821,"く":-3788,"け":-4376,"げ":-4734,"こ":2255,"ご":1979,"さ":2864,"し":-843,"じ":-2506,"す":-731,"ず":1251,"せ":181,"そ":4091,"た":5034,"だ":5408,"ち":-3654,"っ":-5882,"つ":-1659,"て":3994,"で":7410,"と":4547,"な":5433,"に":6499,"ぬ":1853,"ね":1413,"の":7396,"は":8578,"ば":1940,"ひ":4249,"び":-4134,"ふ":1345,"へ":6665,"べ":-744,"ほ":1464,"ま":1051,"み":-2082,"む":-882,"め":-5046,"も":4169,"ゃ":-2666,"や":2795,"ょ":-1544,"よ":3351,"ら":-2922,"り":-9726,"る":-14896,"れ":-2613,"ろ":-4570,"わ":-1783,"を":13150,"ん":-2352,"カ":2145,"コ":1789,"セ":1287,"ッ":-724,"ト":-403,"メ":-1635,"ラ":-881,"リ":-541,"ル":-856,"ン":-3637,"・":-4371,"ー":-11870,"一":-2069,"中":2210,"予":782,"事":-190,"井":-1768,"人":1036,"以":544,"会":950,"体":-1286,"作":530,"側":4292,"先":601,"党":-2006,"共":-1212,"内":584,"円":788,"初":1347,"前":1623,"副":3879,"力":-302,"動":-740,"務":-2715,"化":776,"区":4517,"協":1013,"参":1555,"合":-1834,"和":-681,"員":-910,"器":-851,"回":1500,"国":-619,"園":-1200,"地":866,"場":-1410,"塁":-2094,"士":-1413,"多":1067,"大":571,"子":-4802,"学":-1397,"定":-1057,"寺":-809,"小":1910,"屋":-1328,"山":-1500,"島":-2056,"川":-2667,"市":2771,"年":374,"庁":-4556,"後":456,"性":553,"感":916,"所":-1566,"支":856,"改":787,"政":2182,"教":704,"文":522,"方":-856,"日":1798,"時":1829,"最":845,"月":-9066,"木":-485,"来":-442,"校":-360,"業":-1043,"氏":5388,"民":-2716,"気":-910,"沢":-939,"済":-543,"物":-735,"率":672,"球":-1267,"生":-1286,"産":-1101,"田":-2900,"町":1826,"的":2586,"目":922,"省":-3485,"県":2997,"空":-867,"立":-2112,"第":788,"米":2937,"系":786,"約":2171,"経":1146,"統":-1169,"総":940,"線":-994,"署":749,"者":2145,"能":-730,"般":-852,"行":-792,"規":792,"警":-1184,"議":-244,"谷":-1000,"賞":730,"車":-1481,"軍":1158,"輪":-1433,"込":-3370,"近":929,"道":-1291,"選":2596,"郎":-4866,"都":1192,"野":-1100,"銀":-2213,"長":357,"間":-2344,"院":-2297,"際":-2604,"電":-878,"領":-1659,"題":-792,"館":-1984,"首":1749,"高":2120,"「":1895,"」":3798,"・":-4371,"ッ":-724,"ー":-11870,"カ":2145,"コ":1789,"セ":1287,"ト":-403,"メ":-1635,"ラ":-881,"リ":-541,"ル":-856,"ン":-3637};
|
||||||
|
this.UW5__ = {",":465,".":-299,"1":-514,"E2":-32768,"]":-2762,"、":465,"。":-299,"「":363,"あ":1655,"い":331,"う":-503,"え":1199,"お":527,"か":647,"が":-421,"き":1624,"ぎ":1971,"く":312,"げ":-983,"さ":-1537,"し":-1371,"す":-852,"だ":-1186,"ち":1093,"っ":52,"つ":921,"て":-18,"で":-850,"と":-127,"ど":1682,"な":-787,"に":-1224,"の":-635,"は":-578,"べ":1001,"み":502,"め":865,"ゃ":3350,"ょ":854,"り":-208,"る":429,"れ":504,"わ":419,"を":-1264,"ん":327,"イ":241,"ル":451,"ン":-343,"中":-871,"京":722,"会":-1153,"党":-654,"務":3519,"区":-901,"告":848,"員":2104,"大":-1296,"学":-548,"定":1785,"嵐":-1304,"市":-2991,"席":921,"年":1763,"思":872,"所":-814,"挙":1618,"新":-1682,"日":218,"月":-4353,"査":932,"格":1356,"機":-1508,"氏":-1347,"田":240,"町":-3912,"的":-3149,"相":1319,"省":-1052,"県":-4003,"研":-997,"社":-278,"空":-813,"統":1955,"者":-2233,"表":663,"語":-1073,"議":1219,"選":-1018,"郎":-368,"長":786,"間":1191,"題":2368,"館":-689,"1":-514,"E2":-32768,"「":363,"イ":241,"ル":451,"ン":-343};
|
||||||
|
this.UW6__ = {",":227,".":808,"1":-270,"E1":306,"、":227,"。":808,"あ":-307,"う":189,"か":241,"が":-73,"く":-121,"こ":-200,"じ":1782,"す":383,"た":-428,"っ":573,"て":-1014,"で":101,"と":-105,"な":-253,"に":-149,"の":-417,"は":-236,"も":-206,"り":187,"る":-135,"を":195,"ル":-673,"ン":-496,"一":-277,"中":201,"件":-800,"会":624,"前":302,"区":1792,"員":-1212,"委":798,"学":-960,"市":887,"広":-695,"後":535,"業":-697,"相":753,"社":-507,"福":974,"空":-822,"者":1811,"連":463,"郎":1082,"1":-270,"E1":306,"ル":-673,"ン":-496};
|
||||||
|
|
||||||
|
return this;
|
||||||
|
}
|
||||||
|
TinySegmenter.prototype.ctype_ = function(str) {
|
||||||
|
for (var i in this.chartype_) {
|
||||||
|
if (str.match(this.chartype_[i][0])) {
|
||||||
|
return this.chartype_[i][1];
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return "O";
|
||||||
|
}
|
||||||
|
|
||||||
|
TinySegmenter.prototype.ts_ = function(v) {
|
||||||
|
if (v) { return v; }
|
||||||
|
return 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
TinySegmenter.prototype.segment = function(input) {
|
||||||
|
if (input == null || input == undefined || input == "") {
|
||||||
|
return [];
|
||||||
|
}
|
||||||
|
var result = [];
|
||||||
|
var seg = ["B3","B2","B1"];
|
||||||
|
var ctype = ["O","O","O"];
|
||||||
|
var o = input.split("");
|
||||||
|
for (i = 0; i < o.length; ++i) {
|
||||||
|
seg.push(o[i]);
|
||||||
|
ctype.push(this.ctype_(o[i]))
|
||||||
|
}
|
||||||
|
seg.push("E1");
|
||||||
|
seg.push("E2");
|
||||||
|
seg.push("E3");
|
||||||
|
ctype.push("O");
|
||||||
|
ctype.push("O");
|
||||||
|
ctype.push("O");
|
||||||
|
var word = seg[3];
|
||||||
|
var p1 = "U";
|
||||||
|
var p2 = "U";
|
||||||
|
var p3 = "U";
|
||||||
|
for (var i = 4; i < seg.length - 3; ++i) {
|
||||||
|
var score = this.BIAS__;
|
||||||
|
var w1 = seg[i-3];
|
||||||
|
var w2 = seg[i-2];
|
||||||
|
var w3 = seg[i-1];
|
||||||
|
var w4 = seg[i];
|
||||||
|
var w5 = seg[i+1];
|
||||||
|
var w6 = seg[i+2];
|
||||||
|
var c1 = ctype[i-3];
|
||||||
|
var c2 = ctype[i-2];
|
||||||
|
var c3 = ctype[i-1];
|
||||||
|
var c4 = ctype[i];
|
||||||
|
var c5 = ctype[i+1];
|
||||||
|
var c6 = ctype[i+2];
|
||||||
|
score += this.ts_(this.UP1__[p1]);
|
||||||
|
score += this.ts_(this.UP2__[p2]);
|
||||||
|
score += this.ts_(this.UP3__[p3]);
|
||||||
|
score += this.ts_(this.BP1__[p1 + p2]);
|
||||||
|
score += this.ts_(this.BP2__[p2 + p3]);
|
||||||
|
score += this.ts_(this.UW1__[w1]);
|
||||||
|
score += this.ts_(this.UW2__[w2]);
|
||||||
|
score += this.ts_(this.UW3__[w3]);
|
||||||
|
score += this.ts_(this.UW4__[w4]);
|
||||||
|
score += this.ts_(this.UW5__[w5]);
|
||||||
|
score += this.ts_(this.UW6__[w6]);
|
||||||
|
score += this.ts_(this.BW1__[w2 + w3]);
|
||||||
|
score += this.ts_(this.BW2__[w3 + w4]);
|
||||||
|
score += this.ts_(this.BW3__[w4 + w5]);
|
||||||
|
score += this.ts_(this.TW1__[w1 + w2 + w3]);
|
||||||
|
score += this.ts_(this.TW2__[w2 + w3 + w4]);
|
||||||
|
score += this.ts_(this.TW3__[w3 + w4 + w5]);
|
||||||
|
score += this.ts_(this.TW4__[w4 + w5 + w6]);
|
||||||
|
score += this.ts_(this.UC1__[c1]);
|
||||||
|
score += this.ts_(this.UC2__[c2]);
|
||||||
|
score += this.ts_(this.UC3__[c3]);
|
||||||
|
score += this.ts_(this.UC4__[c4]);
|
||||||
|
score += this.ts_(this.UC5__[c5]);
|
||||||
|
score += this.ts_(this.UC6__[c6]);
|
||||||
|
score += this.ts_(this.BC1__[c2 + c3]);
|
||||||
|
score += this.ts_(this.BC2__[c3 + c4]);
|
||||||
|
score += this.ts_(this.BC3__[c4 + c5]);
|
||||||
|
score += this.ts_(this.TC1__[c1 + c2 + c3]);
|
||||||
|
score += this.ts_(this.TC2__[c2 + c3 + c4]);
|
||||||
|
score += this.ts_(this.TC3__[c3 + c4 + c5]);
|
||||||
|
score += this.ts_(this.TC4__[c4 + c5 + c6]);
|
||||||
|
// score += this.ts_(this.TC5__[c4 + c5 + c6]);
|
||||||
|
score += this.ts_(this.UQ1__[p1 + c1]);
|
||||||
|
score += this.ts_(this.UQ2__[p2 + c2]);
|
||||||
|
score += this.ts_(this.UQ3__[p3 + c3]);
|
||||||
|
score += this.ts_(this.BQ1__[p2 + c2 + c3]);
|
||||||
|
score += this.ts_(this.BQ2__[p2 + c3 + c4]);
|
||||||
|
score += this.ts_(this.BQ3__[p3 + c2 + c3]);
|
||||||
|
score += this.ts_(this.BQ4__[p3 + c3 + c4]);
|
||||||
|
score += this.ts_(this.TQ1__[p2 + c1 + c2 + c3]);
|
||||||
|
score += this.ts_(this.TQ2__[p2 + c2 + c3 + c4]);
|
||||||
|
score += this.ts_(this.TQ3__[p3 + c1 + c2 + c3]);
|
||||||
|
score += this.ts_(this.TQ4__[p3 + c2 + c3 + c4]);
|
||||||
|
var p = "O";
|
||||||
|
if (score > 0) {
|
||||||
|
result.push(word);
|
||||||
|
word = "";
|
||||||
|
p = "B";
|
||||||
|
}
|
||||||
|
p1 = p2;
|
||||||
|
p2 = p3;
|
||||||
|
p3 = p;
|
||||||
|
word += seg[i];
|
||||||
|
}
|
||||||
|
result.push(word);
|
||||||
|
|
||||||
|
return result;
|
||||||
|
}
|
||||||
|
|
||||||
|
lunr.TinySegmenter = TinySegmenter;
|
||||||
|
};
|
||||||
|
|
||||||
|
}));
|
||||||
File diff suppressed because it is too large.
Load diff
@@ -0,0 +1,42 @@
|
|||||||
|
"use strict";(()=>{var xe=Object.create;var G=Object.defineProperty,ve=Object.defineProperties,Se=Object.getOwnPropertyDescriptor,Te=Object.getOwnPropertyDescriptors,Qe=Object.getOwnPropertyNames,J=Object.getOwnPropertySymbols,Ee=Object.getPrototypeOf,Z=Object.prototype.hasOwnProperty,be=Object.prototype.propertyIsEnumerable;var K=Math.pow,X=(t,e,r)=>e in t?G(t,e,{enumerable:!0,configurable:!0,writable:!0,value:r}):t[e]=r,_=(t,e)=>{for(var r in e||(e={}))Z.call(e,r)&&X(t,r,e[r]);if(J)for(var r of J(e))be.call(e,r)&&X(t,r,e[r]);return t},B=(t,e)=>ve(t,Te(e));var Le=(t,e)=>()=>(e||t((e={exports:{}}).exports,e),e.exports);var we=(t,e,r,n)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of Qe(e))!Z.call(t,i)&&i!==r&&G(t,i,{get:()=>e[i],enumerable:!(n=Se(e,i))||n.enumerable});return t};var Pe=(t,e,r)=>(r=t!=null?xe(Ee(t)):{},we(e||!t||!t.__esModule?G(r,"default",{value:t,enumerable:!0}):r,t));var W=(t,e,r)=>new Promise((n,i)=>{var s=u=>{try{a(r.next(u))}catch(c){i(c)}},o=u=>{try{a(r.throw(u))}catch(c){i(c)}},a=u=>u.done?n(u.value):Promise.resolve(u.value).then(s,o);a((r=r.apply(t,e)).next())});var re=Le((ee,te)=>{/**
|
||||||
|
* lunr - http://lunrjs.com - A bit like Solr, but much smaller and not as bright - 2.3.9
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
* @license MIT
|
||||||
|
*/(function(){var t=function(e){var r=new t.Builder;return r.pipeline.add(t.trimmer,t.stopWordFilter,t.stemmer),r.searchPipeline.add(t.stemmer),e.call(r,r),r.build()};t.version="2.3.9";/*!
|
||||||
|
* lunr.utils
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.utils={},t.utils.warn=(function(e){return function(r){e.console&&console.warn&&console.warn(r)}})(this),t.utils.asString=function(e){return e==null?"":e.toString()},t.utils.clone=function(e){if(e==null)return e;for(var r=Object.create(null),n=Object.keys(e),i=0;i<n.length;i++){var s=n[i],o=e[s];if(Array.isArray(o)){r[s]=o.slice();continue}if(typeof o=="string"||typeof o=="number"||typeof o=="boolean"){r[s]=o;continue}throw new TypeError("clone is not deep and does not support nested objects")}return r},t.FieldRef=function(e,r,n){this.docRef=e,this.fieldName=r,this._stringValue=n},t.FieldRef.joiner="/",t.FieldRef.fromString=function(e){var r=e.indexOf(t.FieldRef.joiner);if(r===-1)throw"malformed field ref string";var n=e.slice(0,r),i=e.slice(r+1);return new t.FieldRef(i,n,e)},t.FieldRef.prototype.toString=function(){return this._stringValue==null&&(this._stringValue=this.fieldName+t.FieldRef.joiner+this.docRef),this._stringValue};/*!
|
||||||
|
* lunr.Set
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.Set=function(e){if(this.elements=Object.create(null),e){this.length=e.length;for(var r=0;r<this.length;r++)this.elements[e[r]]=!0}else this.length=0},t.Set.complete={intersect:function(e){return e},union:function(){return this},contains:function(){return!0}},t.Set.empty={intersect:function(){return this},union:function(e){return e},contains:function(){return!1}},t.Set.prototype.contains=function(e){return!!this.elements[e]},t.Set.prototype.intersect=function(e){var r,n,i,s=[];if(e===t.Set.complete)return this;if(e===t.Set.empty)return e;this.length<e.length?(r=this,n=e):(r=e,n=this),i=Object.keys(r.elements);for(var o=0;o<i.length;o++){var a=i[o];a in n.elements&&s.push(a)}return new t.Set(s)},t.Set.prototype.union=function(e){return e===t.Set.complete?t.Set.complete:e===t.Set.empty?this:new t.Set(Object.keys(this.elements).concat(Object.keys(e.elements)))},t.idf=function(e,r){var n=0;for(var i in e)i!="_index"&&(n+=Object.keys(e[i]).length);var s=(r-n+.5)/(n+.5);return Math.log(1+Math.abs(s))},t.Token=function(e,r){this.str=e||"",this.metadata=r||{}},t.Token.prototype.toString=function(){return this.str},t.Token.prototype.update=function(e){return this.str=e(this.str,this.metadata),this},t.Token.prototype.clone=function(e){return e=e||function(r){return r},new t.Token(e(this.str,this.metadata),this.metadata)};/*!
|
||||||
|
* lunr.tokenizer
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.tokenizer=function(e,r){if(e==null||e==null)return[];if(Array.isArray(e))return e.map(function(g){return new t.Token(t.utils.asString(g).toLowerCase(),t.utils.clone(r))});for(var n=e.toString().toLowerCase(),i=n.length,s=[],o=0,a=0;o<=i;o++){var u=n.charAt(o),c=o-a;if(u.match(t.tokenizer.separator)||o==i){if(c>0){var f=t.utils.clone(r)||{};f.position=[a,c],f.index=s.length,s.push(new t.Token(n.slice(a,o),f))}a=o+1}}return s},t.tokenizer.separator=/[\s\-]+/;/*!
|
||||||
|
* lunr.Pipeline
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.Pipeline=function(){this._stack=[]},t.Pipeline.registeredFunctions=Object.create(null),t.Pipeline.registerFunction=function(e,r){r in this.registeredFunctions&&t.utils.warn("Overwriting existing registered function: "+r),e.label=r,t.Pipeline.registeredFunctions[e.label]=e},t.Pipeline.warnIfFunctionNotRegistered=function(e){var r=e.label&&e.label in this.registeredFunctions;r||t.utils.warn(`Function is not registered with pipeline. This may cause problems when serialising the index.
|
||||||
|
`,e)},t.Pipeline.load=function(e){var r=new t.Pipeline;return e.forEach(function(n){var i=t.Pipeline.registeredFunctions[n];if(i)r.add(i);else throw new Error("Cannot load unregistered function: "+n)}),r},t.Pipeline.prototype.add=function(){var e=Array.prototype.slice.call(arguments);e.forEach(function(r){t.Pipeline.warnIfFunctionNotRegistered(r),this._stack.push(r)},this)},t.Pipeline.prototype.after=function(e,r){t.Pipeline.warnIfFunctionNotRegistered(r);var n=this._stack.indexOf(e);if(n==-1)throw new Error("Cannot find existingFn");n=n+1,this._stack.splice(n,0,r)},t.Pipeline.prototype.before=function(e,r){t.Pipeline.warnIfFunctionNotRegistered(r);var n=this._stack.indexOf(e);if(n==-1)throw new Error("Cannot find existingFn");this._stack.splice(n,0,r)},t.Pipeline.prototype.remove=function(e){var r=this._stack.indexOf(e);r!=-1&&this._stack.splice(r,1)},t.Pipeline.prototype.run=function(e){for(var r=this._stack.length,n=0;n<r;n++){for(var i=this._stack[n],s=[],o=0;o<e.length;o++){var a=i(e[o],o,e);if(!(a==null||a===""))if(Array.isArray(a))for(var u=0;u<a.length;u++)s.push(a[u]);else s.push(a)}e=s}return e},t.Pipeline.prototype.runString=function(e,r){var n=new t.Token(e,r);return this.run([n]).map(function(i){return i.toString()})},t.Pipeline.prototype.reset=function(){this._stack=[]},t.Pipeline.prototype.toJSON=function(){return this._stack.map(function(e){return t.Pipeline.warnIfFunctionNotRegistered(e),e.label})};/*!
|
||||||
|
* lunr.Vector
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.Vector=function(e){this._magnitude=0,this.elements=e||[]},t.Vector.prototype.positionForIndex=function(e){if(this.elements.length==0)return 0;for(var r=0,n=this.elements.length/2,i=n-r,s=Math.floor(i/2),o=this.elements[s*2];i>1&&(o<e&&(r=s),o>e&&(n=s),o!=e);)i=n-r,s=r+Math.floor(i/2),o=this.elements[s*2];if(o==e||o>e)return s*2;if(o<e)return(s+1)*2},t.Vector.prototype.insert=function(e,r){this.upsert(e,r,function(){throw"duplicate index"})},t.Vector.prototype.upsert=function(e,r,n){this._magnitude=0;var i=this.positionForIndex(e);this.elements[i]==e?this.elements[i+1]=n(this.elements[i+1],r):this.elements.splice(i,0,e,r)},t.Vector.prototype.magnitude=function(){if(this._magnitude)return this._magnitude;for(var e=0,r=this.elements.length,n=1;n<r;n+=2){var i=this.elements[n];e+=i*i}return this._magnitude=Math.sqrt(e)},t.Vector.prototype.dot=function(e){for(var r=0,n=this.elements,i=e.elements,s=n.length,o=i.length,a=0,u=0,c=0,f=0;c<s&&f<o;)a=n[c],u=i[f],a<u?c+=2:a>u?f+=2:a==u&&(r+=n[c+1]*i[f+1],c+=2,f+=2);return r},t.Vector.prototype.similarity=function(e){return this.dot(e)/this.magnitude()||0},t.Vector.prototype.toArray=function(){for(var e=new Array(this.elements.length/2),r=1,n=0;r<this.elements.length;r+=2,n++)e[n]=this.elements[r];return e},t.Vector.prototype.toJSON=function(){return this.elements};/*!
|
||||||
|
* lunr.stemmer
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
* Includes code from - http://tartarus.org/~martin/PorterStemmer/js.txt
|
||||||
|
*/t.stemmer=(function(){var e={ational:"ate",tional:"tion",enci:"ence",anci:"ance",izer:"ize",bli:"ble",alli:"al",entli:"ent",eli:"e",ousli:"ous",ization:"ize",ation:"ate",ator:"ate",alism:"al",iveness:"ive",fulness:"ful",ousness:"ous",aliti:"al",iviti:"ive",biliti:"ble",logi:"log"},r={icate:"ic",ative:"",alize:"al",iciti:"ic",ical:"ic",ful:"",ness:""},n="[^aeiou]",i="[aeiouy]",s=n+"[^aeiouy]*",o=i+"[aeiou]*",a="^("+s+")?"+o+s,u="^("+s+")?"+o+s+"("+o+")?$",c="^("+s+")?"+o+s+o+s,f="^("+s+")?"+i,g=new RegExp(a),l=new RegExp(c),m=new RegExp(u),x=new RegExp(f),v=/^(.+?)(ss|i)es$/,d=/^(.+?)([^s])s$/,y=/^(.+?)eed$/,b=/^(.+?)(ed|ing)$/,E=/.$/,w=/(at|bl|iz)$/,R=new RegExp("([^aeiouylsz])\\1$"),j=new RegExp("^"+s+i+"[^aeiouwxy]$"),C=/^(.+?[^aeiou])y$/,D=/^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/,N=/^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/,M=/^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/,V=/^(.+?)(s|t)(ion)$/,P=/^(.+?)e$/,z=/ll$/,$=new RegExp("^"+s+i+"[^aeiouwxy]$"),A=function(h){var S,k,L,p,T,O,F;if(h.length<3)return h;if(L=h.substr(0,1),L=="y"&&(h=L.toUpperCase()+h.substr(1)),p=v,T=d,p.test(h)?h=h.replace(p,"$1$2"):T.test(h)&&(h=h.replace(T,"$1$2")),p=y,T=b,p.test(h)){var Q=p.exec(h);p=g,p.test(Q[1])&&(p=E,h=h.replace(p,""))}else if(T.test(h)){var Q=T.exec(h);S=Q[1],T=x,T.test(S)&&(h=S,T=w,O=R,F=j,T.test(h)?h=h+"e":O.test(h)?(p=E,h=h.replace(p,"")):F.test(h)&&(h=h+"e"))}if(p=C,p.test(h)){var Q=p.exec(h);S=Q[1],h=S+"i"}if(p=D,p.test(h)){var Q=p.exec(h);S=Q[1],k=Q[2],p=g,p.test(S)&&(h=S+e[k])}if(p=N,p.test(h)){var Q=p.exec(h);S=Q[1],k=Q[2],p=g,p.test(S)&&(h=S+r[k])}if(p=M,T=V,p.test(h)){var Q=p.exec(h);S=Q[1],p=l,p.test(S)&&(h=S)}else if(T.test(h)){var Q=T.exec(h);S=Q[1]+Q[2],T=l,T.test(S)&&(h=S)}if(p=P,p.test(h)){var Q=p.exec(h);S=Q[1],p=l,T=m,O=$,(p.test(S)||T.test(S)&&!O.test(S))&&(h=S)}return p=z,T=l,p.test(h)&&T.test(h)&&(p=E,h=h.replace(p,"")),L=="y"&&(h=L.toLowerCase()+h.substr(1)),h};return function(I){return I.update(A)}})(),t.Pipeline.registerFunction(t.stemmer,"stemmer");/*!
|
||||||
|
* lunr.stopWordFilter
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.generateStopWordFilter=function(e){var r=e.reduce(function(n,i){return n[i]=i,n},{});return function(n){if(n&&r[n.toString()]!==n.toString())return n}},t.stopWordFilter=t.generateStopWordFilter(["a","able","about","across","after","all","almost","also","am","among","an","and","any","are","as","at","be","because","been","but","by","can","cannot","could","dear","did","do","does","either","else","ever","every","for","from","get","got","had","has","have","he","her","hers","him","his","how","however","i","if","in","into","is","it","its","just","least","let","like","likely","may","me","might","most","must","my","neither","no","nor","not","of","off","often","on","only","or","other","our","own","rather","said","say","says","she","should","since","so","some","than","that","the","their","them","then","there","these","they","this","tis","to","too","twas","us","wants","was","we","were","what","when","where","which","while","who","whom","why","will","with","would","yet","you","your"]),t.Pipeline.registerFunction(t.stopWordFilter,"stopWordFilter");/*!
|
||||||
|
* lunr.trimmer
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.trimmer=function(e){return e.update(function(r){return r.replace(/^\W+/,"").replace(/\W+$/,"")})},t.Pipeline.registerFunction(t.trimmer,"trimmer");/*!
|
||||||
|
* lunr.TokenSet
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.TokenSet=function(){this.final=!1,this.edges={},this.id=t.TokenSet._nextId,t.TokenSet._nextId+=1},t.TokenSet._nextId=1,t.TokenSet.fromArray=function(e){for(var r=new t.TokenSet.Builder,n=0,i=e.length;n<i;n++)r.insert(e[n]);return r.finish(),r.root},t.TokenSet.fromClause=function(e){return"editDistance"in e?t.TokenSet.fromFuzzyString(e.term,e.editDistance):t.TokenSet.fromString(e.term)},t.TokenSet.fromFuzzyString=function(e,r){for(var n=new t.TokenSet,i=[{node:n,editsRemaining:r,str:e}];i.length;){var s=i.pop();if(s.str.length>0){var o=s.str.charAt(0),a;o in s.node.edges?a=s.node.edges[o]:(a=new t.TokenSet,s.node.edges[o]=a),s.str.length==1&&(a.final=!0),i.push({node:a,editsRemaining:s.editsRemaining,str:s.str.slice(1)})}if(s.editsRemaining!=0){if("*"in s.node.edges)var u=s.node.edges["*"];else{var u=new t.TokenSet;s.node.edges["*"]=u}if(s.str.length==0&&(u.final=!0),i.push({node:u,editsRemaining:s.editsRemaining-1,str:s.str}),s.str.length>1&&i.push({node:s.node,editsRemaining:s.editsRemaining-1,str:s.str.slice(1)}),s.str.length==1&&(s.node.final=!0),s.str.length>=1){if("*"in s.node.edges)var c=s.node.edges["*"];else{var c=new t.TokenSet;s.node.edges["*"]=c}s.str.length==1&&(c.final=!0),i.push({node:c,editsRemaining:s.editsRemaining-1,str:s.str.slice(1)})}if(s.str.length>1){var f=s.str.charAt(0),g=s.str.charAt(1),l;g in s.node.edges?l=s.node.edges[g]:(l=new t.TokenSet,s.node.edges[g]=l),s.str.length==1&&(l.final=!0),i.push({node:l,editsRemaining:s.editsRemaining-1,str:f+s.str.slice(2)})}}}return n},t.TokenSet.fromString=function(e){for(var r=new t.TokenSet,n=r,i=0,s=e.length;i<s;i++){var o=e[i],a=i==s-1;if(o=="*")r.edges[o]=r,r.final=a;else{var u=new t.TokenSet;u.final=a,r.edges[o]=u,r=u}}return n},t.TokenSet.prototype.toArray=function(){for(var e=[],r=[{prefix:"",node:this}];r.length;){var n=r.pop(),i=Object.keys(n.node.edges),s=i.length;n.node.final&&(n.prefix.charAt(0),e.push(n.prefix));for(var o=0;o<s;o++){var a=i[o];r.push({prefix:n.prefix.concat(a),node:n.node.edges[a]})}}return e},t.TokenSet.prototype.toString=function(){if(this._str)return this._str;for(var e=this.final?"1":"0",r=Object.keys(this.edges).sort(),n=r.length,i=0;i<n;i++){var s=r[i],o=this.edges[s];e=e+s+o.id}return e},t.TokenSet.prototype.intersect=function(e){for(var r=new t.TokenSet,n=void 0,i=[{qNode:e,output:r,node:this}];i.length;){n=i.pop();for(var s=Object.keys(n.qNode.edges),o=s.length,a=Object.keys(n.node.edges),u=a.length,c=0;c<o;c++)for(var f=s[c],g=0;g<u;g++){var l=a[g];if(l==f||f=="*"){var m=n.node.edges[l],x=n.qNode.edges[f],v=m.final&&x.final,d=void 0;l in n.output.edges?(d=n.output.edges[l],d.final=d.final||v):(d=new t.TokenSet,d.final=v,n.output.edges[l]=d),i.push({qNode:x,output:d,node:m})}}}return r},t.TokenSet.Builder=function(){this.previousWord="",this.root=new t.TokenSet,this.uncheckedNodes=[],this.minimizedNodes={}},t.TokenSet.Builder.prototype.insert=function(e){var r,n=0;if(e<this.previousWord)throw new Error("Out of order word insertion");for(var i=0;i<e.length&&i<this.previousWord.length&&e[i]==this.previousWord[i];i++)n++;this.minimize(n),this.uncheckedNodes.length==0?r=this.root:r=this.uncheckedNodes[this.uncheckedNodes.length-1].child;for(var i=n;i<e.length;i++){var s=new t.TokenSet,o=e[i];r.edges[o]=s,this.uncheckedNodes.push({parent:r,char:o,child:s}),r=s}r.final=!0,this.previousWord=e},t.TokenSet.Builder.prototype.finish=function(){this.minimize(0)},t.TokenSet.Builder.prototype.minimize=function(e){for(var r=this.uncheckedNodes.length-1;r>=e;r--){var n=this.uncheckedNodes[r],i=n.child.toString();i in this.minimizedNodes?n.parent.edges[n.char]=this.minimizedNodes[i]:(n.child._str=i,this.minimizedNodes[i]=n.child),this.uncheckedNodes.pop()}};/*!
|
||||||
|
* lunr.Index
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.Index=function(e){this.invertedIndex=e.invertedIndex,this.fieldVectors=e.fieldVectors,this.tokenSet=e.tokenSet,this.fields=e.fields,this.pipeline=e.pipeline},t.Index.prototype.search=function(e){return this.query(function(r){var n=new t.QueryParser(e,r);n.parse()})},t.Index.prototype.query=function(e){for(var r=new t.Query(this.fields),n=Object.create(null),i=Object.create(null),s=Object.create(null),o=Object.create(null),a=Object.create(null),u=0;u<this.fields.length;u++)i[this.fields[u]]=new t.Vector;e.call(r,r);for(var u=0;u<r.clauses.length;u++){var c=r.clauses[u],f=null,g=t.Set.empty;c.usePipeline?f=this.pipeline.runString(c.term,{fields:c.fields}):f=[c.term];for(var l=0;l<f.length;l++){var m=f[l];c.term=m;var x=t.TokenSet.fromClause(c),v=this.tokenSet.intersect(x).toArray();if(v.length===0&&c.presence===t.Query.presence.REQUIRED){for(var d=0;d<c.fields.length;d++){var y=c.fields[d];o[y]=t.Set.empty}break}for(var b=0;b<v.length;b++)for(var E=v[b],w=this.invertedIndex[E],R=w._index,d=0;d<c.fields.length;d++){var y=c.fields[d],j=w[y],C=Object.keys(j),D=E+"/"+y,N=new t.Set(C);if(c.presence==t.Query.presence.REQUIRED&&(g=g.union(N),o[y]===void 0&&(o[y]=t.Set.complete)),c.presence==t.Query.presence.PROHIBITED){a[y]===void 0&&(a[y]=t.Set.empty),a[y]=a[y].union(N);continue}if(i[y].upsert(R,c.boost,function(ye,me){return ye+me}),!s[D]){for(var M=0;M<C.length;M++){var V=C[M],P=new t.FieldRef(V,y),z=j[V],$;($=n[P])===void 0?n[P]=new t.MatchData(E,y,z):$.add(E,y,z)}s[D]=!0}}}if(c.presence===t.Query.presence.REQUIRED)for(var d=0;d<c.fields.length;d++){var y=c.fields[d];o[y]=o[y].intersect(g)}}for(var A=t.Set.complete,I=t.Set.empty,u=0;u<this.fields.length;u++){var y=this.fields[u];o[y]&&(A=A.intersect(o[y])),a[y]&&(I=I.union(a[y]))}var h=Object.keys(n),S=[],k=Object.create(null);if(r.isNegated()){h=Object.keys(this.fieldVectors);for(var u=0;u<h.length;u++){var P=h[u],L=t.FieldRef.fromString(P);n[P]=new t.MatchData}}for(var u=0;u<h.length;u++){var L=t.FieldRef.fromString(h[u]),p=L.docRef;if(A.contains(p)&&!I.contains(p)){var T=this.fieldVectors[L],O=i[L.fieldName].similarity(T),F;if((F=k[p])!==void 0)F.score+=O,F.matchData.combine(n[L]);else{var Q={ref:p,score:O,matchData:n[L]};k[p]=Q,S.push(Q)}}}return S.sort(function(pe,ge){return ge.score-pe.score})},t.Index.prototype.toJSON=function(){var e=Object.keys(this.invertedIndex).sort().map(function(n){return[n,this.invertedIndex[n]]},this),r=Object.keys(this.fieldVectors).map(function(n){return[n,this.fieldVectors[n].toJSON()]},this);return{version:t.version,fields:this.fields,fieldVectors:r,invertedIndex:e,pipeline:this.pipeline.toJSON()}},t.Index.load=function(e){var r={},n={},i=e.fieldVectors,s=Object.create(null),o=e.invertedIndex,a=new t.TokenSet.Builder,u=t.Pipeline.load(e.pipeline);e.version!=t.version&&t.utils.warn("Version mismatch when loading serialised index. Current version of lunr '"+t.version+"' does not match serialized index '"+e.version+"'");for(var c=0;c<i.length;c++){var f=i[c],g=f[0],l=f[1];n[g]=new t.Vector(l)}for(var c=0;c<o.length;c++){var f=o[c],m=f[0],x=f[1];a.insert(m),s[m]=x}return a.finish(),r.fields=e.fields,r.fieldVectors=n,r.invertedIndex=s,r.tokenSet=a.root,r.pipeline=u,new t.Index(r)};/*!
|
||||||
|
* lunr.Builder
|
||||||
|
* Copyright (C) 2020 Oliver Nightingale
|
||||||
|
*/t.Builder=function(){this._ref="id",this._fields=Object.create(null),this._documents=Object.create(null),this.invertedIndex=Object.create(null),this.fieldTermFrequencies={},this.fieldLengths={},this.tokenizer=t.tokenizer,this.pipeline=new t.Pipeline,this.searchPipeline=new t.Pipeline,this.documentCount=0,this._b=.75,this._k1=1.2,this.termIndex=0,this.metadataWhitelist=[]},t.Builder.prototype.ref=function(e){this._ref=e},t.Builder.prototype.field=function(e,r){if(/\//.test(e))throw new RangeError("Field '"+e+"' contains illegal character '/'");this._fields[e]=r||{}},t.Builder.prototype.b=function(e){e<0?this._b=0:e>1?this._b=1:this._b=e},t.Builder.prototype.k1=function(e){this._k1=e},t.Builder.prototype.add=function(e,r){var n=e[this._ref],i=Object.keys(this._fields);this._documents[n]=r||{},this.documentCount+=1;for(var s=0;s<i.length;s++){var o=i[s],a=this._fields[o].extractor,u=a?a(e):e[o],c=this.tokenizer(u,{fields:[o]}),f=this.pipeline.run(c),g=new t.FieldRef(n,o),l=Object.create(null);this.fieldTermFrequencies[g]=l,this.fieldLengths[g]=0,this.fieldLengths[g]+=f.length;for(var m=0;m<f.length;m++){var x=f[m];if(l[x]==null&&(l[x]=0),l[x]+=1,this.invertedIndex[x]==null){var v=Object.create(null);v._index=this.termIndex,this.termIndex+=1;for(var d=0;d<i.length;d++)v[i[d]]=Object.create(null);this.invertedIndex[x]=v}this.invertedIndex[x][o][n]==null&&(this.invertedIndex[x][o][n]=Object.create(null));for(var y=0;y<this.metadataWhitelist.length;y++){var b=this.metadataWhitelist[y],E=x.metadata[b];this.invertedIndex[x][o][n][b]==null&&(this.invertedIndex[x][o][n][b]=[]),this.invertedIndex[x][o][n][b].push(E)}}}},t.Builder.prototype.calculateAverageFieldLengths=function(){for(var e=Object.keys(this.fieldLengths),r=e.length,n={},i={},s=0;s<r;s++){var o=t.FieldRef.fromString(e[s]),a=o.fieldName;i[a]||(i[a]=0),i[a]+=1,n[a]||(n[a]=0),n[a]+=this.fieldLengths[o]}for(var u=Object.keys(this._fields),s=0;s<u.length;s++){var c=u[s];n[c]=n[c]/i[c]}this.averageFieldLength=n},t.Builder.prototype.createFieldVectors=function(){for(var e={},r=Object.keys(this.fieldTermFrequencies),n=r.length,i=Object.create(null),s=0;s<n;s++){for(var o=t.FieldRef.fromString(r[s]),a=o.fieldName,u=this.fieldLengths[o],c=new t.Vector,f=this.fieldTermFrequencies[o],g=Object.keys(f),l=g.length,m=this._fields[a].boost||1,x=this._documents[o.docRef].boost||1,v=0;v<l;v++){var d=g[v],y=f[d],b=this.invertedIndex[d]._index,E,w,R;i[d]===void 0?(E=t.idf(this.invertedIndex[d],this.documentCount),i[d]=E):E=i[d],w=E*((this._k1+1)*y)/(this._k1*(1-this._b+this._b*(u/this.averageFieldLength[a]))+y),w*=m,w*=x,R=Math.round(w*1e3)/1e3,c.insert(b,R)}e[o]=c}this.fieldVectors=e},t.Builder.prototype.createTokenSet=function(){this.tokenSet=t.TokenSet.fromArray(Object.keys(this.invertedIndex).sort())},t.Builder.prototype.build=function(){return this.calculateAverageFieldLengths(),this.createFieldVectors(),this.createTokenSet(),new t.Index({invertedIndex:this.invertedIndex,fieldVectors:this.fieldVectors,tokenSet:this.tokenSet,fields:Object.keys(this._fields),pipeline:this.searchPipeline})},t.Builder.prototype.use=function(e){var r=Array.prototype.slice.call(arguments,1);r.unshift(this),e.apply(this,r)},t.MatchData=function(e,r,n){for(var i=Object.create(null),s=Object.keys(n||{}),o=0;o<s.length;o++){var a=s[o];i[a]=n[a].slice()}this.metadata=Object.create(null),e!==void 0&&(this.metadata[e]=Object.create(null),this.metadata[e][r]=i)},t.MatchData.prototype.combine=function(e){for(var r=Object.keys(e.metadata),n=0;n<r.length;n++){var i=r[n],s=Object.keys(e.metadata[i]);this.metadata[i]==null&&(this.metadata[i]=Object.create(null));for(var o=0;o<s.length;o++){var a=s[o],u=Object.keys(e.metadata[i][a]);this.metadata[i][a]==null&&(this.metadata[i][a]=Object.create(null));for(var c=0;c<u.length;c++){var f=u[c];this.metadata[i][a][f]==null?this.metadata[i][a][f]=e.metadata[i][a][f]:this.metadata[i][a][f]=this.metadata[i][a][f].concat(e.metadata[i][a][f])}}}},t.MatchData.prototype.add=function(e,r,n){if(!(e in this.metadata)){this.metadata[e]=Object.create(null),this.metadata[e][r]=n;return}if(!(r in this.metadata[e])){this.metadata[e][r]=n;return}for(var i=Object.keys(n),s=0;s<i.length;s++){var o=i[s];o in this.metadata[e][r]?this.metadata[e][r][o]=this.metadata[e][r][o].concat(n[o]):this.metadata[e][r][o]=n[o]}},t.Query=function(e){this.clauses=[],this.allFields=e},t.Query.wildcard=new String("*"),t.Query.wildcard.NONE=0,t.Query.wildcard.LEADING=1,t.Query.wildcard.TRAILING=2,t.Query.presence={OPTIONAL:1,REQUIRED:2,PROHIBITED:3},t.Query.prototype.clause=function(e){return"fields"in e||(e.fields=this.allFields),"boost"in e||(e.boost=1),"usePipeline"in e||(e.usePipeline=!0),"wildcard"in e||(e.wildcard=t.Query.wildcard.NONE),e.wildcard&t.Query.wildcard.LEADING&&e.term.charAt(0)!=t.Query.wildcard&&(e.term="*"+e.term),e.wildcard&t.Query.wildcard.TRAILING&&e.term.slice(-1)!=t.Query.wildcard&&(e.term=""+e.term+"*"),"presence"in e||(e.presence=t.Query.presence.OPTIONAL),this.clauses.
Line truncated
|
||||||
|
//# sourceMappingURL=search.2c215733.min.js.map
|
||||||
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|
||||||
@@ -0,0 +1,7 @@
|
|||||||
|
{
|
||||||
|
"version": 3,
|
||||||
|
"sources": ["node_modules/lunr/lunr.js", "src/templates/assets/javascripts/integrations/search/worker/main/index.ts", "src/templates/assets/javascripts/browser/element/_/index.ts", "src/templates/assets/javascripts/polyfills/index.ts", "src/templates/assets/javascripts/integrations/search/config/index.ts", "src/templates/assets/javascripts/integrations/search/internal/_/index.ts", "src/templates/assets/javascripts/integrations/search/internal/extract/index.ts", "src/templates/assets/javascripts/integrations/search/internal/highlight/index.ts", "src/templates/assets/javascripts/integrations/search/internal/tokenize/index.ts", "src/templates/assets/javascripts/integrations/search/query/transform/index.ts", "src/templates/assets/javascripts/integrations/search/query/_/index.ts", "src/templates/assets/javascripts/integrations/search/query/segment/index.ts", "src/templates/assets/javascripts/integrations/search/_/index.ts"],
|
||||||
|
"sourcesContent": ["/**\n * lunr - http://lunrjs.com - A bit like Solr, but much smaller and not as bright - 2.3.9\n * Copyright (C) 2020 Oliver Nightingale\n * @license MIT\n */\n\n;(function(){\n\n/**\n * A convenience function for configuring and constructing\n * a new lunr Index.\n *\n * A lunr.Builder instance is created and the pipeline setup\n * with a trimmer, stop word filter and stemmer.\n *\n * This builder object is yielded to the configuration function\n * that is passed as a parameter, allowing the list of fields\n * and other builder parameters to be customised.\n *\n * All documents _must_ be added within the passed config function.\n *\n * @example\n * var idx = lunr(function () {\n * this.field('title')\n * this.field('body')\n * this.ref('id')\n *\n * documents.forEach(function (doc) {\n * this.add(doc)\n * }, this)\n * })\n *\n * @see {@link lunr.Builder}\n * @see {@link lunr.Pipeline}\n * @see {@link lunr.trimmer}\n * @see {@link lunr.stopWordFilter}\n * @see {@link lunr.stemmer}\n * @namespace {function} lunr\n */\nvar lunr = function (config) {\n var builder = new lunr.Builder\n\n builder.pipeline.add(\n lunr.trimmer,\n lunr.stopWordFilter,\n lunr.stemmer\n )\n\n builder.searchPipeline.add(\n lunr.stemmer\n )\n\n config.call(builder, builder)\n return builder.build()\n}\n\nlunr.version = \"2.3.9\"\n/*!\n * lunr.utils\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * A namespace containing utils for the rest of the lunr library\n * @namespace lunr.utils\n */\nlunr.utils = {}\n\n/**\n * Print a warning message to the console.\n *\n * @param {String} message The message to be printed.\n * @memberOf lunr.utils\n * @function\n */\nlunr.utils.warn = (function (global) {\n /* eslint-disable no-console */\n return function (message) {\n if (global.console && console.warn) {\n console.warn(message)\n }\n }\n /* eslint-enable no-console */\n})(this)\n\n/**\n * Convert an object to a string.\n *\n * In the case of `null` and `undefined` the function returns\n * the empty string, in all other cases the result of calling\n * `toString` on the passed object is returned.\n *\n * @param {Any} obj The object to convert to a string.\n * @return {String} string representation of the passed object.\n * @memberOf lunr.utils\n */\nlunr.utils.asString = function (obj) {\n if (obj === void 0 || obj === null) {\n return \"\"\n } else {\n return obj.toString()\n }\n}\n\n/**\n * Clones an object.\n *\n * Will create a copy of an existing object such that any mutations\n * on the copy cannot affect the original.\n *\n * Only shallow objects are supported, passing a nested object to this\n * function will cause a TypeError.\n *\n * Objects with primitives, and arrays of primitives are supported.\n *\n * @param {Object} obj The object to clone.\n * @return {Object} a clone of the passed object.\n * @throws {TypeError} when a nested object is passed.\n * @memberOf Utils\n */\nlunr.utils.clone = function (obj) {\n if (obj === null || obj === undefined) {\n return obj\n }\n\n var clone = Object.create(null),\n keys = Object.keys(obj)\n\n for (var i = 0; i < keys.length; i++) {\n var key = keys[i],\n val = obj[key]\n\n if (Array.isArray(val)) {\n clone[key] = val.slice()\n continue\n }\n\n if (typeof val === 'string' ||\n typeof val === 'number' ||\n typeof val === 'boolean') {\n clone[key] = val\n continue\n }\n\n throw new TypeError(\"clone is not deep and does not support nested objects\")\n }\n\n return clone\n}\nlunr.FieldRef = function (docRef, fieldName, stringValue) {\n this.docRef = docRef\n this.fieldName = fieldName\n this._stringValue = stringValue\n}\n\nlunr.FieldRef.joiner = \"/\"\n\nlunr.FieldRef.fromString = function (s) {\n var n = s.indexOf(lunr.FieldRef.joiner)\n\n if (n === -1) {\n throw \"malformed field ref string\"\n }\n\n var fieldRef = s.slice(0, n),\n docRef = s.slice(n + 1)\n\n return new lunr.FieldRef (docRef, fieldRef, s)\n}\n\nlunr.FieldRef.prototype.toString = function () {\n if (this._stringValue == undefined) {\n this._stringValue = this.fieldName + lunr.FieldRef.joiner + this.docRef\n }\n\n return this._stringValue\n}\n/*!\n * lunr.Set\n * Copyright (C) 2020 Oliver Nightingale\n */\n\n/**\n * A lunr set.\n *\n * @constructor\n */\nlunr.Set = function (elements) {\n this.elements = Object.create(null)\n\n if (elements) {\n this.length = elements.length\n\n for (var i = 0; i < this.length; i++) {\n this.elements[elements[i]] = true\n }\n } else {\n this.length = 0\n }\n}\n\n/**\n * A complete set that contains all elements.\n *\n * @static\n * @readonly\n * @type {lunr.Set}\n */\nlunr.Set.complete = {\n intersect: function (other) {\n return other\n },\n\n union: function () {\n return this\n },\n\n contains: function () {\n return true\n }\n}\n\n/**\n * An empty set that contains no elementLine truncated
|
||||||
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{"version":3,"sources":["src/templates/assets/stylesheets/main/components/_meta.scss","../../../../src/templates/assets/stylesheets/main.scss","src/templates/assets/stylesheets/main/_resets.scss","src/templates/assets/stylesheets/main/_colors.scss","src/templates/assets/stylesheets/main/_icons.scss","src/templates/assets/stylesheets/main/_typeset.scss","src/templates/assets/stylesheets/utilities/_break.scss","src/templates/assets/stylesheets/main/components/_author.scss","src/templates/assets/stylesheets/main/components/_banner.scss","src/templates/assets/stylesheets/main/components/_base.scss","src/templates/assets/stylesheets/main/components/_clipboard.scss","src/templates/assets/stylesheets/main/components/_code.scss","src/templates/assets/stylesheets/main/components/_consent.scss","src/templates/assets/stylesheets/main/components/_content.scss","src/templates/assets/stylesheets/main/components/_dialog.scss","src/templates/assets/stylesheets/main/components/_feedback.scss","src/templates/assets/stylesheets/main/components/_footer.scss","src/templates/assets/stylesheets/main/components/_form.scss","src/templates/assets/stylesheets/main/components/_header.scss","node_modules/material-design-color/material-color.scss","src/templates/assets/stylesheets/main/components/_nav.scss","src/templates/assets/stylesheets/main/components/_pagination.scss","src/templates/assets/stylesheets/main/components/_path.scss","src/templates/assets/stylesheets/main/components/_post.scss","src/templates/assets/stylesheets/main/components/_progress.scss","src/templates/assets/stylesheets/main/components/_search.scss","src/templates/assets/stylesheets/main/components/_select.scss","src/templates/assets/stylesheets/main/components/_sidebar.scss","src/templates/assets/stylesheets/main/components/_source.scss","src/templates/assets/stylesheets/main/components/_status.scss","src/templates/assets/stylesheets/main/components/_tabs.scss","src/templates/assets/stylesheets/main/components/_tag.scss","src/templates/assets/stylesheets/main/components/_tooltip.scss","src/templates/assets/stylesheets/main/components/_tooltip2.scss","src/templates/assets/stylesheets/main/components/_top.scss","src/templates/assets/stylesheets/main/components/_version.scss","src/templates/assets/stylesheets/main/extensions/markdown/_admonition.scss","src/templates/assets/stylesheets/main/extensions/markdown/_footnotes.scss","src/templates/assets/stylesheets/main/extensions/markdown/_toc.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_arithmatex.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_critic.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_details.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_emoji.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_highlight.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_keys.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_tabbed.scss","src/templates/assets/stylesheets/main/extensions/pymdownx/_tasklist.scss","src/templates/assets/stylesheets/main/integrations/_giscus.scss","src/templates/assets/stylesheets/main/integrations/_mermaid.scss","src/templates/assets/stylesheets/main/modifiers/_grid.scss","src/templates/assets/stylesheets/main/modifiers/_inline.scss"],"names":[],"mappings":"AA0CE,gBCy2CF,CCv3CA,KAEE,6BAAA,CAAA,0BAAA,CAAA,qBAAA,CADA,qBDzBF,CC8BA,iBAGE,kBD3BF,CC8BE,gCANF,iBAOI,yBDzBF,CACF,CC6BA,KACE,QD1BF,CC8BA,qBAIE,uCD3BF,CC+BA,EACE,aAAA,CACA,oBD5BF,CCgCA,GAME,QAAA,CALA,kBAAA,CACA,aAAA,CACA,aAAA,CAEA,gBAAA,CADA,SD3BF,CCiCA,MACE,aD9BF,CCkCA,QAEE,eD/BF,CCmCA,IACE,iBDhCF,CCoCA,MAEE,uBAAA,CADA,gBDhCF,CCqCA,MAEE,eAAA,CACA,kBDlCF,CCsCA,OAKE,gBAAA,CACA,QAAA,CAHA,mBAAA,CACA,iBAAA,CAFA,QAAA,CADA,SD9BF,CCuCA,MACE,QAAA,CACA,YDpCF,CErDA,MAIE,6BAAA,CACA,oCAAA,CACA,mCAAA,CACA,0BAAA,CACA,sCAAA,CAGA,4BAAA,CACA,2CAAA,CACA,yBAAA,CACA,qCFmDF,CE7CA,+BAIE,kBF6CF,CE1CE,oHAEE,YF4CJ,CEnCA,qCAIE,eAAA,CAGA,+BAAA,CACA,sCAAA,CACA,wCAAA,CACA,yCAAA,CACA,0BAAA,CACA,sCAAA,CACA,wCAAA,CACA,yCAAA,CAGA,0BAAA,CACA,0BAAA,CACA,mCAAA,CACA,qCAAA,CAGA,0BAAA,CACA,mCAAA,CAGA,iCAAA,CACA,kCAAA,CACA,mCAAA,CACA,mCAAA,CACA,kCAAA,CACA,iCAAA,CACA,+CAAA,CACA,6DAAA,CACA,gEAAA,CACA,4DAAA,CACA,4DAAA,CACA,6DAAA,CAGA,6CAAA,CAGA,+CAAA,CAGA,gCAAA,CACA,gCAAA,CAGA,8BAAA,CACA,kCAAA,CACA,qCAAA,CAGA,iCAAA,CAGA,kCAAA,CACA,gDAAA,CAGA,mDAAA,CACA,mDAAA,CAGA,+BAAA,CACA,0BAAA,CAGA,yBAAA,CACA,qCAAA,CACA,uCAAA,CACA,8BAAA,CACA,oCAAA,CAGA,8DAAA,CAKA,8DAAA,CAKA,0DFKF,CGhIE,aAIE,iBAAA,CAHA,aAAA,CAEA,aAAA,CADA,YHqIJ,CI1IA,KACE,kCAAA,CACA,iCAAA,CAGA,uGAAA,CAKA,mFJ2IF,CIrIA,iBAIE,mCAAA,CACA,6BAAA,CAFA,sCJ0IF,CIpIA,aAIE,4BAAA,CADA,sCJwIF,CI/HA,MACE,wNAAA,CACA,gNAAA,CACA,iNJkIF,CI3HA,YAIE,gCAAA,CAAA,kBAAA,CAHA,eAAA,CACA,eAAA,CACA,wBJ+HF,CI1HE,aARF,YASI,gBJ6HF,CACF,CI1HE,uGAME,iBAAA,CAAA,cJ4HJ,CIxHE,eAKE,uCAAA,CAHA,aAAA,CAEA,eAAA,CAHA,iBJ+HJ,CItHE,8BAPE,eAAA,CAGA,qBJiIJ,CI7HE,eAEE,kBAAA,CAEA,eAAA,CAHA,oBJ4HJ,CIpHE,eAEE,gBAAA,CACA,eAAA,CAEA,qBAAA,CADA,eAAA,CAHA,mBJ0HJ,CL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@media screen{[data-md-color-scheme=slate]{--md-default-fg-color:hsla(var(--md-hue),15%,90%,0.82);--md-default-fg-color--light:hsla(var(--md-hue),15%,90%,0.56);--md-default-fg-color--lighter:hsla(var(--md-hue),15%,90%,0.32);--md-default-fg-color--lightest:hsla(var(--md-hue),15%,90%,0.12);--md-default-bg-color:hsla(var(--md-hue),15%,14%,1);--md-default-bg-color--light:hsla(var(--md-hue),15%,14%,0.54);--md-default-bg-color--lighter:hsla(var(--md-hue),15%,14%,0.26);--md-default-bg-color--lightest:hsla(var(--md-hue),15%,14%,0.07);--md-code-fg-color:hsla(var(--md-hue),18%,86%,0.82);--md-code-bg-color:hsla(var(--md-hue),15%,18%,1);--md-code-bg-color--light:hsla(var(--md-hue),15%,18%,0.9);--md-code-bg-color--lighter:hsla(var(--md-hue),15%,18%,0.54);--md-code-hl-color:#2977ff;--md-code-hl-color--light:#2977ff1a;--md-code-hl-number-color:#e6695b;--md-code-hl-special-color:#f06090;--md-code-hl-function-color:#c973d9;--md-code-hl-constant-color:#9383e2;--md-code-hl-keyword-color:#6791e0;--md-code-hl-string-color:#2fb170;--md-code-hl-name-color:var(--md-code-fg-color);--md-code-hl-operator-color:var(--md-default-fg-color--light);--md-code-hl-punctuation-color:var(--md-default-fg-color--light);--md-code-hl-comment-color:var(--md-default-fg-color--light);--md-code-hl-generic-color:var(--md-default-fg-color--light);--md-code-hl-variable-color:var(--md-default-fg-color--light);--md-typeset-color:var(--md-default-fg-color);--md-typeset-a-color:var(--md-primary-fg-color);--md-typeset-kbd-color:hsla(var(--md-hue),15%,90%,0.12);--md-typeset-kbd-accent-color:hsla(var(--md-hue),15%,90%,0.2);--md-typeset-kbd-border-color:hsla(var(--md-hue),15%,14%,1);--md-typeset-mark-color:#4287ff4d;--md-typeset-table-color:hsla(var(--md-hue),15%,95%,0.12);--md-typeset-table-color--light:hsla(var(--md-hue),15%,95%,0.035);--md-admonition-fg-color:var(--md-default-fg-color);--md-admonition-bg-color:var(--md-default-bg-color);--md-footer-bg-color:hsla(var(--md-hue),15%,10%,0.87);--md-footer-bg-color--dark:hsla(var(--md-hue),15%,8%,1);--md-shadow-z1:0 0.2rem 0.5rem #0000000d,0 0 0.05rem #0000001a;--md-shadow-z2:0 0.2rem 0.5rem #00000040,0 0 0.05rem #00000040;--md-shadow-z3:0 0.2rem 0.5rem #0006,0 0 0.05rem #00000059;color-scheme:dark}[data-md-color-scheme=slate] img[src$="#gh-light-mode-only"],[data-md-color-scheme=slate] img[src$="#only-light"]{display:none}[data-md-color-scheme=slate][data-md-color-primary=pink]{--md-typeset-a-color:#ed5487}[data-md-color-scheme=slate][data-md-color-primary=purple]{--md-typeset-a-color:#c46fd3}[data-md-color-scheme=slate][data-md-color-primary=deep-purple]{--md-typeset-a-color:#a47bea}[data-md-color-scheme=slate][data-md-color-primary=indigo]{--md-typeset-a-color:#5488e8}[data-md-color-scheme=slate][data-md-color-primary=teal]{--md-typeset-a-color:#00ccb8}[data-md-color-scheme=slate][data-md-color-primary=green]{--md-typeset-a-color:#71c174}[data-md-color-scheme=slate][data-md-color-primary=deep-orange]{--md-typeset-a-color:#ff764d}[data-md-color-scheme=slate][data-md-color-primary=brown]{--md-typeset-a-color:#c1775c}[data-md-color-scheme=slate][data-md-color-primary=black],[data-md-color-scheme=slate][data-md-color-primary=blue-grey],[data-md-color-scheme=slate][data-md-color-primary=grey],[data-md-color-scheme=slate][data-md-color-primary=white]{--md-typeset-a-color:#5e8bde}[data-md-color-switching] *,[data-md-color-switching] :after,[data-md-color-switching] :before{transition-duration:0ms!important}}[data-md-color-accent=red]{--md-accent-fg-color:#ff1947;--md-accent-fg-color--transparent:#ff19471a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=pink]{--md-accent-fg-color:#f50056;--md-accent-fg-color--transparent:#f500561a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=purple]{--md-accent-fg-color:#df41fb;--md-accent-fg-color--transparent:#df41fb1a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=deep-purple]{--md-accent-fg-color:#7c4dff;--md-accent-fg-color--transparent:#7c4dff1a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=indigo]{--md-accent-fg-color:#526cfe;--md-accent-fg-color--transparent:#526cfe1a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=blue]{--md-accent-fg-color:#4287ff;--md-accent-fg-color--transparent:#4287ff1a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=light-blue]{--md-accent-fg-color:#0091eb;--md-accent-fg-color--transparent:#0091eb1a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=cyan]{--md-accent-fg-color:#00bad6;--md-accent-fg-color--transparent:#00bad61a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=teal]{--md-accent-fg-color:#00bda4;--md-accent-fg-color--transparent:#00bda41a;--md-accent-bg-color:#fff;--md-accent-bg-color--light:#ffffffb3}[data-md-color-accent=green]{--md-acceLine 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{"version":3,"sources":["src/templates/assets/stylesheets/palette/_scheme.scss","../../../../src/templates/assets/stylesheets/palette.scss","src/templates/assets/stylesheets/palette/_accent.scss","src/templates/assets/stylesheets/palette/_primary.scss","src/templates/assets/stylesheets/utilities/_break.scss"],"names":[],"mappings":"AA2BA,cAGE,6BAME,sDAAA,CACA,6DAAA,CACA,+DAAA,CACA,gEAAA,CACA,mDAAA,CACA,6DAAA,CACA,+DAAA,CACA,gEAAA,CAGA,mDAAA,CACA,gDAAA,CACA,yDAAA,CACA,4DAAA,CAGA,0BAAA,CACA,mCAAA,CAGA,iCAAA,CACA,kCAAA,CACA,mCAAA,CACA,mCAAA,CACA,kCAAA,CACA,iCAAA,CACA,+CAAA,CACA,6DAAA,CACA,gEAAA,CACA,4DAAA,CACA,4DAAA,CACA,6DAAA,CAGA,6CAAA,CAGA,+CAAA,CAGA,uDAAA,CACA,6DAAA,CACA,2DAAA,CAGA,iCAAA,CAGA,yDAAA,CACA,iEAAA,CAGA,mDAAA,CACA,mDAAA,CAGA,qDAAA,CACA,uDAAA,CAGA,8DAAA,CAKA,8DAAA,CAKA,0DAAA,CAzEA,iBCiBF,CD6DE,kHAEE,YC3DJ,CDkFE,yDACE,4BChFJ,CD+EE,2DACE,4BC7EJ,CD4EE,gEACE,4BC1EJ,CDyEE,2DACE,4BCvEJ,CDsEE,yDACE,4BCpEJ,CDmEE,0DACE,4BCjEJ,CDgEE,gEACE,4BC9DJ,CD6DE,0DACE,4BC3DJ,CD0DE,2OACE,4BC/CJ,CDsDA,+FAGE,iCCpDF,CACF,CCjDE,2BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCD6CN,CCvDE,4BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDoDN,CC9DE,8BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCD2DN,CCrEE,mCACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDkEN,CC5EE,8BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDyEN,CCnFE,4BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDgFN,CC1FE,kCACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDuFN,CCjGE,4BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCD8FN,CCxGE,4BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDqGN,CC/GE,6BACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCD4GN,CCtHE,mCACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDmHN,CC7HE,4BACE,4BAAA,CACA,2CAAA,CAIE,8BAAA,CACA,qCD6HN,CCpIE,8BACE,4BAAA,CACA,2CAAA,CAIE,8BAAA,CACA,qCDoIN,CC3IE,6BACE,yBAAA,CACA,2CAAA,CAIE,8BAAA,CACA,qCD2IN,CClJE,8BACE,4BAAA,CACA,2CAAA,CAIE,8BAAA,CACA,qCDkJN,CCzJE,mCACE,4BAAA,CACA,2CAAA,CAOE,yBAAA,CACA,qCDsJN,CE3JE,4BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFwJN,CEnKE,6BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFgKN,CE3KE,+BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFwKN,CEnLE,oCACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFgLN,CE3LE,+BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFwLN,CEnME,6BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFgMN,CE3ME,mCACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFwMN,CEnNE,6BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFgNN,CE3NE,6BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFwNN,CEnOE,8BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFgON,CE3OE,oCACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFwON,CEnPE,6BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAIE,+BAAA,CACA,sCFmPN,CE3PE,+BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAIE,+BAAA,CACA,sCF2PN,CEnQE,8BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAIE,+BAAA,CACA,sCFmQN,CE3QE,+BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAIE,+BAAA,CACA,sCF2QN,CEnRE,oCACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFgRN,CE3RE,8BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCFwRN,CEnSE,6BACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCAAA,CAKA,4BF4RN,CE5SE,kCACE,6BAAA,CACA,oCAAA,CACA,mCAAA,CAOE,0BAAA,CACA,sCAAA,CAKA,4BFqSN,CEtRE,sEACE,4BFyRJ,CE1RE,+DACE,4BF6RJ,CE9RE,iEACE,4BFiSJ,CElSE,gEACE,4BFqSJ,CEtSE,iEACE,4BFySJ,CEhSA,8BACE,mDAAA,CACA,4DAAA,CACA,0DAAA,CACA,oDAAA,CACA,2DAAA,CAGA,4BFiSF,CE9RE,yCACE,+BFgSJ,CE7RI,kDAEE,0CAAA,CACA,sCAAA,CAFA,mCFiSN,CG7MI,mCD1EA,+CACE,8CF0RJ,CEvRI,qDACE,8CFyRN,CEpRE,iEACE,mCFsRJ,CACF,CGxNI,sCDvDA,uCACE,oCFkRJ,CACF,CEzQA,8BACE,kDAAA,CACA,4DAAA,CACA,wDAAA,CACA,oDAAA,CACA,6DAAA,CAGA,4BF0QF,CEvQE,yCACE,+BFyQJ,CEtQI,kDAEE,0CAAA,CACA,sCAAA,CAFA,mCF0QN,CEnQE,yCACE,6CFqQJ,CG9NI,0CDhCA,8CACE,gDFiQJ,CACF,CGnOI,0CDvBA,iFACE,6CF6PJ,CACF,CG3PI,sCDKA,uCACE,6CFyPJ,CACF","file":"palette.css"}
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<title>On-disk storage - obikmer</title>
|
<title>Chunkreader.refs - obikmer</title>
|
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||||||
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|
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|
||||||
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||||||
On-disk storage
|
Chunkreader.refs
|
||||||
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|
||||||
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|
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|
||||||
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|
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|
||||||
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||||||
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|
||||||
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|
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|
|||||||
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|
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||||||
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||||||
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||||||
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|||||||
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||||||
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||||||
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|
||||||
<h1 id="on-disk-collection-structure">On-disk collection structure</h1>
|
<!-- coverage sidecar — ne pas ajouter au nav mkdocs -->
|
||||||
<p>See <a href="../obilayeredmap/">obilayeredmap crate</a> for the current on-disk layout.</p>
|
<h1 id="coverage-implementationchunkreadermd">Coverage: implementation/chunkreader.md</h1>
|
||||||
<p>The index root contains one <code>part_XXXXX/</code> directory per partition, each holding one or more <code>layer_N/</code> directories. Each layer directory contains <code>mphf.bin</code>, <code>unitigs.bin</code>, <code>unitigs.bin.idx</code>, <code>evidence.bin</code>, and optionally a <code>counts/</code> or <code>presence/</code> payload directory.</p>
|
<h2 id="code-couvert">Code couvert</h2>
|
||||||
|
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|
||||||
|
<li><code>obiread/src/chunk.rs</code> — SeqChunkIter, détection de frontières FASTA/FASTQ, state machines</li>
|
||||||
|
<li><code>obikrope/src/lib.rs</code> — type Rope (Vec<Bytes>), opérations zero-copy</li>
|
||||||
|
</ul>
|
||||||
|
<h2 id="notes">Notes</h2>
|
||||||
|
<p>Document stable (la stratégie de chunking rope ne devrait pas avoir changé).
|
||||||
|
Vérifier que le split FASTA/FASTQ reste correct si de nouveaux formats ont été ajoutés.</p>
|
||||||
|
|
||||||
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|
||||||
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|
||||||
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-50
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||||||
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||||||
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||||||
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||||||
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|
||||||
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|
||||||
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|
||||||
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|
||||||
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|
||||||
|
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|
||||||
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||||||
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||||||
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|
||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
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||||||
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||||||
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||||||
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||||||
<h1 id="chunk-reader-implementation">Chunk reader — implementation</h1>
|
<h1 id="chunk-reader-implementation">Chunk reader — implementation</h1>
|
||||||
<p>The <code>obiread</code> crate provides a streaming iterator that reads FASTA or FASTQ files in fixed-size blocks and yields self-contained chunks, each ending on a complete sequence record boundary. Chunks are consumed in parallel by downstream workers.</p>
|
<p><code>obiread</code> exposes two distinct sequence reading paths, each optimised for a different use case.</p>
|
||||||
<h2 id="output-type-rope">Output type: rope</h2>
|
<h2 id="two-reading-paths">Two reading paths</h2>
|
||||||
<p>Each chunk is a <code>Vec<Bytes></code> — a <strong>rope</strong>: a list of reference-counted byte slices that are not necessarily contiguous in memory. The consumer iterates over the slices in order.</p>
|
|
||||||
<p>Using <code>bytes::Bytes</code> means the split at the record boundary is O(1): <code>Bytes::split_to(n)</code> adjusts a reference counter, not memory. No <code>memcpy</code> in the common case.</p>
|
|
||||||
<h2 id="allocation-policy">Allocation policy</h2>
|
|
||||||
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|
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|
||||||
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|
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|
||||||
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|
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|
||||||
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|
<th>Path</th>
|
||||||
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|
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|
||||||
|
<th>Output unit</th>
|
||||||
|
<th>Per-record identity</th>
|
||||||
|
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|
||||||
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|
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|
||||||
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|
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|
||||||
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|
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|
||||||
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|
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|
||||||
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|
<td><strong>Record path</strong></td>
|
||||||
<td>zero extra allocation — <code>split_to</code> only</td>
|
<td><code>read_sequence_chunks</code> → <code>parse_chunk</code></td>
|
||||||
|
<td><code>SeqRecord</code> (id + raw sequence + normalised rope)</td>
|
||||||
|
<td>yes</td>
|
||||||
|
<td><code>query</code> — must read complete records</td>
|
||||||
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|
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|
||||||
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|
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|
||||||
<td>Boundary straddles multiple blocks (sequence > block size, rare)</td>
|
<td><strong>Stream path</strong></td>
|
||||||
<td>one allocation to pack the rope into a flat buffer</td>
|
<td><code>open_nuc_stream</code></td>
|
||||||
</tr>
|
<td><code>NucPage</code> (flat normalised byte buffer)</td>
|
||||||
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|
<td>no</td>
|
||||||
<td>EOF flush</td>
|
<td><code>index</code>, <code>superkmer</code> — bulk throughput</td>
|
||||||
<td>zero extra allocation</td>
|
|
||||||
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|
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|
||||||
</tbody>
|
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|
||||||
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|
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|
||||||
|
<p>The record path uses <code>Rope</code>-backed chunks and is described in detail below.
|
||||||
|
The stream path (<code>NucStream</code> / <code>NucPage</code>) is described in the scatter section of <a href="../pipeline/">pipeline</a>.</p>
|
||||||
|
<hr/>
|
||||||
|
<h2 id="record-path-chunk-reader">Record path: chunk reader</h2>
|
||||||
|
<p>The chunk reader reads FASTA or FASTQ files in fixed-size blocks and yields self-contained chunks, each ending on a complete sequence record boundary. <code>parse_chunk</code> then converts each chunk into a <code>Vec<SeqRecord></code>, where each record carries its identifier, raw sequence bytes, and a normalised rope ready for superkmer building.</p>
|
||||||
|
<p>This path is mandatory for <code>query</code>, where superkmers must be tracked back to their originating sequence (id, kmer offset) for output annotation.</p>
|
||||||
|
<h2 id="output-type-rope">Output type: Rope</h2>
|
||||||
|
<p>Each chunk is a <code>Rope</code> — a segmented byte sequence: a <code>Vec</code> of blocks, where each block is a <code>Vec<Cell<u8>></code>. The consumer iterates over the blocks via a forward or backward cursor.</p>
|
||||||
|
<p><code>Rope::split_off(pos)</code> splits at an absolute byte offset in O(log n) (binary search over block-start index). If <code>pos</code> falls inside a block, that block is split in two via <code>Vec::split_off</code> — no <code>memcpy</code> in the common case.</p>
|
||||||
<h2 id="seqchunkiter">SeqChunkIter</h2>
|
<h2 id="seqchunkiter">SeqChunkIter</h2>
|
||||||
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">struct</span><span class="w"> </span><span class="nc">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="cm">/* private */</span><span class="w"> </span><span class="p">}</span>
|
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">struct</span><span class="w"> </span><span class="nc">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="cm">/* private */</span><span class="w"> </span><span class="p">}</span>
|
||||||
|
|
||||||
<span class="k">impl</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="w"> </span><span class="nb">Iterator</span><span class="w"> </span><span class="k">for</span><span class="w"> </span><span class="n">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="o">></span><span class="w"> </span><span class="p">{</span>
|
<span class="k">impl</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="w"> </span><span class="nb">Iterator</span><span class="w"> </span><span class="k">for</span><span class="w"> </span><span class="n">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="o">></span><span class="w"> </span><span class="p">{</span>
|
||||||
<span class="w"> </span><span class="k">type</span><span class="w"> </span><span class="nc">Item</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">io</span><span class="p">::</span><span class="nb">Result</span><span class="o"><</span><span class="nb">Vec</span><span class="o"><</span><span class="n">Bytes</span><span class="o">>></span><span class="p">;</span>
|
<span class="w"> </span><span class="k">type</span><span class="w"> </span><span class="nc">Item</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">io</span><span class="p">::</span><span class="nb">Result</span><span class="o"><</span><span class="n">Rope</span><span class="o">></span><span class="p">;</span>
|
||||||
<span class="p">}</span>
|
<span class="p">}</span>
|
||||||
|
|
||||||
<span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">fasta_chunks</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="p">(</span><span class="n">source</span><span class="p">:</span><span class="w"> </span><span class="nc">R</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="o">></span>
|
<span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">fasta_chunks</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="p">(</span><span class="n">source</span><span class="p">:</span><span class="w"> </span><span class="nc">R</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="o">></span>
|
||||||
<span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">fastq_chunks</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="p">(</span><span class="n">source</span><span class="p">:</span><span class="w"> </span><span class="nc">R</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="o">></span>
|
<span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">fastq_chunks</span><span class="o"><</span><span class="n">R</span><span class="p">:</span><span class="w"> </span><span class="nc">Read</span><span class="o">></span><span class="p">(</span><span class="n">source</span><span class="p">:</span><span class="w"> </span><span class="nc">R</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">SeqChunkIter</span><span class="o"><</span><span class="n">R</span><span class="o">></span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p><code>next()</code> loop:</p>
|
<p><code>next()</code> loop:</p>
|
||||||
<div class="highlight"><pre><span></span><code>1. read one block of block_size bytes → push onto rope
|
<div class="highlight"><pre><span></span><code>1. read one block of block_size bytes → push onto Rope
|
||||||
2. probe check: if the boundary marker ("\n>" or "\n@") is absent from the
|
2. call splitter(rope) → Option<abs_offset>
|
||||||
last block, skip the splitter (avoids a full backward scan for nothing)
|
if Some(pos):
|
||||||
3. call splitter on last block
|
tail = rope.split_off(pos) ← O(log n), may split one block
|
||||||
if found at offset n:
|
chunk = mem::replace(&mut rope, tail)
|
||||||
remainder = last_block.split_to(n) ← O(1), zero copy
|
return Some(Ok(chunk))
|
||||||
return std::mem::take(&mut self.rope) ← the chunk
|
3. if EOF and rope non-empty: return Some(Ok(rope)) as final chunk
|
||||||
4. if rope.len() > 1 (multi-block accumulation):
|
4. if EOF and rope empty: return None
|
||||||
pack rope into one flat buffer ← one alloc
|
|
||||||
retry splitter on flat buffer
|
|
||||||
5. if EOF: flush remaining rope as final chunk
|
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
|
<p>The <code>Splitter</code> function signature is <code>fn(&Rope) -> Option<usize></code>. It returns the absolute byte offset of the start of the last complete record, or <code>None</code> if no boundary was found in the accumulated rope (need more data).</p>
|
||||||
<h2 id="boundary-detection-fasta">Boundary detection — FASTA</h2>
|
<h2 id="boundary-detection-fasta">Boundary detection — FASTA</h2>
|
||||||
<p>Backward scan with a 2-state machine. Searches for <code>></code> immediately preceded by <code>\n</code> or <code>\r</code>:</p>
|
<p>Backward scan with a 2-state machine. Searches (right to left) for <code>></code> followed by <code>\n</code> or <code>\r</code> (i.e., a <code>></code> that is preceded by a newline in forward order):</p>
|
||||||
<pre class="mermaid"><code>stateDiagram-v2
|
<pre class="mermaid"><code>stateDiagram-v2
|
||||||
direction LR
|
direction LR
|
||||||
[*] --> Scanning
|
[*] --> Scanning
|
||||||
Scanning --> FoundGt : '>'
|
Scanning --> FoundGt : '>'
|
||||||
FoundGt --> Scanning : other
|
FoundGt --> Scanning : other
|
||||||
FoundGt --> [*] : '\\n' / '\\r' ✓</code></pre>
|
FoundGt --> [*] : '\\n' / '\\r' ✓</code></pre>
|
||||||
<p>Returns the byte offset of the <code>></code> that starts the last complete record.</p>
|
<p>Returns the byte offset of the <code>></code> that starts the last complete record. Returns <code>None</code> if only one <code>></code> is found (cannot confirm there is a prior complete record).</p>
|
||||||
<h2 id="boundary-detection-fastq">Boundary detection — FASTQ</h2>
|
<h2 id="boundary-detection-fastq">Boundary detection — FASTQ</h2>
|
||||||
<p>FASTQ records have a rigid 4-line structure (<code>@header</code>, sequence, <code>+</code>, quality). The <code>@</code> character (ASCII 64, Phred score 31) can appear legitimately in quality lines, making any forward heuristic unreliable. The backward scanner verifies the full structural context before accepting a candidate <code>@</code>.</p>
|
<p>FASTQ records have a rigid 4-line structure (<code>@header</code>, sequence, <code>+</code>, quality). The <code>@</code> character (ASCII 64, Phred score 31) can appear legitimately in quality lines, making any forward heuristic unreliable. The backward scanner verifies the full structural context before accepting a candidate <code>@</code>.</p>
|
||||||
<p>7-state machine (port of Go's <code>EndOfLastFastqEntry</code>), scanning from <strong>right to left</strong>. Each time a <code>+</code> is found, its position is saved as <code>restart</code>; any state mismatch resets the scan to that position.</p>
|
<p>7-state machine (states 0–6), scanning from <strong>right to left</strong>. Each time a <code>+</code> is found, its position is saved as <code>restart</code>; any state mismatch resets the scan to that position.</p>
|
||||||
<pre class="mermaid"><code>stateDiagram-v2
|
<pre class="mermaid"><code>stateDiagram-v2
|
||||||
direction LR
|
direction LR
|
||||||
|
|
||||||
@@ -596,6 +773,16 @@
|
|||||||
FoundAt --> InHeader : other</code></pre>
|
FoundAt --> InHeader : other</code></pre>
|
||||||
<p><code>restart</code> is updated each time a <code>+</code> is found. When any state fails its expected input, the scan jumps back to <code>restart</code> and continues from there — guaranteeing that a <code>@</code> in a quality line cannot be accepted as a record start, because the <code>\n+\n</code> structure immediately following it (going backward) will not be found.</p>
|
<p><code>restart</code> is updated each time a <code>+</code> is found. When any state fails its expected input, the scan jumps back to <code>restart</code> and continues from there — guaranteeing that a <code>@</code> in a quality line cannot be accepted as a record start, because the <code>\n+\n</code> structure immediately following it (going backward) will not be found.</p>
|
||||||
<p>Returns the byte offset of the <code>@</code> that starts the last complete record.</p>
|
<p>Returns the byte offset of the <code>@</code> that starts the last complete record.</p>
|
||||||
|
<hr/>
|
||||||
|
<h2 id="future-work-parallel-gzip-decompression-in-xopen">Future work — parallel gzip decompression in <code>xopen</code></h2>
|
||||||
|
<p><code>obiread::xopen</code> (<code>xopen.rs</code>) decompresses gzip via <code>niffler</code> → <code>flate2</code>, which is single-threaded (standard DEFLATE has no parallel-decodable structure). For large local gzip inputs this single-threaded decompression can become the throughput bottleneck feeding the <code>query</code>/<code>index</code>/<code>superkmer</code> pipelines, since chunk/page production for a given file is serialized ahead of the worker pool.</p>
|
||||||
|
<p>Candidate: special-case local, on-disk, gzip-magic-detected paths in <code>open_raw</code>/<code>xopen</code> to use <a href="https://github.com/alekseizarubin/rapidgzip-rs"><code>rapidgzip-rs</code></a> (<code>ReaderBuilder::new().parallelism(n).open(path)</code>, implements <code>Read + Seek</code>) instead of <code>niffler</code>, keeping <code>niffler</code> for every other case: <code>stdin</code> (<code>-</code>), HTTP(S) sources, and all non-gzip formats (bzip2, xz, zstd — less used in practice here).</p>
|
||||||
|
<p>Constraints identified so far (not yet validated against real data):
|
||||||
|
- Branch point must move earlier than the current <code>decompress()</code> call in <code>open_raw</code> — rapidgzip's fast path needs the file <strong>path</strong>, not an already-opened generic <code>Read</code>, so the gzip/local-file detection has to happen before the generic <code>File::open</code> + <code>niffler::send::get_reader</code> path is taken.
|
||||||
|
- <code>stdin</code> and HTTP sources are not seekable — they stay on <code>niffler</code> regardless; the gain only applies to local on-disk <code>.gz</code> files.
|
||||||
|
- <code>rapidgzip-sys</code> vendors a native C++ engine: requires CMake ≥ 3.17, a C++17 compiler, and <code>nasm</code> on x86 targets — a real build-toolchain addition, not just a pure-Rust crate.
|
||||||
|
- Low maturity of the Rust binding at review time (2 GitHub stars, ~15 commits, April 2026 latest release) — the underlying C++ engine is validated (HPDC 2023 paper), but the binding itself has limited production track record.</p>
|
||||||
|
<p>Decision: parked for now. Before adopting, validate on real data: throughput vs. <code>niffler</code> on representative large <code>.gz</code> inputs, and byte-for-byte correctness of decompressed output.</p>
|
||||||
</article>
|
</article>
|
||||||
</div>
|
</div>
|
||||||
<script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script>
|
<script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script>
|
||||||
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@@ -182,6 +182,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Installation
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
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|
||||||
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|
||||||
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||||||
|
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||||||
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||||||
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|
||||||
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|
||||||
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|
||||||
|
|
||||||
|
|
||||||
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|
|||||||
|
|
||||||
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|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_2" >
|
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|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_2" id="__nav_2_label" tabindex="0">
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -212,8 +239,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
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|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_2_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_2">
|
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|
||||||
<span class="md-nav__icon md-icon"></span>
|
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|
||||||
|
|
||||||
|
|
||||||
@@ -363,6 +390,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
<a href="../../theory/evolutionary_distances/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Central-position SNP distance (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
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|
||||||
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|
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|
||||||
|
|
||||||
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|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
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|
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|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_3" id="__nav_3_label" tabindex="0">
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
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|
|||||||
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|
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|
||||||
</label>
|
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|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="true">
|
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|
||||||
<label class="md-nav__title" for="__nav_3">
|
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|
||||||
<span class="md-nav__icon md-icon"></span>
|
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|
||||||
|
|
||||||
|
|
||||||
@@ -514,10 +569,21 @@
|
|||||||
<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
|
<ul class="md-nav__list" data-md-component="toc" data-md-scrollfix>
|
||||||
|
|
||||||
<li class="md-nav__item">
|
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|
||||||
<a href="#memory-layout" class="md-nav__link">
|
<a href="#types-and-layout" class="md-nav__link">
|
||||||
<span class="md-ellipsis">
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
Memory layout
|
Types and layout
|
||||||
|
|
||||||
|
</span>
|
||||||
|
</a>
|
||||||
|
|
||||||
|
</li>
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="#global-parameters" class="md-nav__link">
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
Global parameters
|
||||||
|
|
||||||
</span>
|
</span>
|
||||||
</a>
|
</a>
|
||||||
@@ -558,10 +624,32 @@
|
|||||||
</li>
|
</li>
|
||||||
|
|
||||||
<li class="md-nav__item">
|
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|
||||||
<a href="#canonical-form" class="md-nav__link">
|
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|
||||||
<span class="md-ellipsis">
|
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|
||||||
|
|
||||||
Canonical form
|
Canonical form and CanonicalKmerOf
|
||||||
|
|
||||||
|
</span>
|
||||||
|
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|
||||||
|
|
||||||
|
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|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
Sliding window helpers
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
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|
||||||
|
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|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
Hashing
|
||||||
|
|
||||||
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|
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|
||||||
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|
</a>
|
||||||
@@ -751,6 +839,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Evidence elimination (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
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|
||||||
|
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|
||||||
|
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|
||||||
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|
||||||
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|
||||||
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||||||
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||||||
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||||||
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||||||
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|
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|
||||||
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|
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|
||||||
|
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|
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|
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||||||
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|
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|
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||||||
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|
|||||||
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|
||||||
|
|
||||||
<h1 id="kmer-implementation">Kmer — implementation</h1>
|
<h1 id="kmer-implementation">Kmer — implementation</h1>
|
||||||
<h2 id="memory-layout">Memory layout</h2>
|
<h2 id="types-and-layout">Types and layout</h2>
|
||||||
<p><code>Kmer</code> is a <code>#[repr(transparent)]</code> newtype over <code>u64</code>:</p>
|
<p><code>KmerOf<L></code> is a <code>#[repr(transparent)]</code> newtype over <code>u64</code> parameterized by a <code>KmerLength</code> marker:</p>
|
||||||
<div class="highlight"><pre><span></span><code><span class="cp">#[repr(transparent)]</span>
|
<div class="highlight"><pre><span></span><code><span class="cp">#[repr(transparent)]</span>
|
||||||
<span class="k">pub</span><span class="w"> </span><span class="k">struct</span><span class="w"> </span><span class="nc">Kmer</span><span class="p">(</span><span class="kt">u64</span><span class="p">);</span>
|
<span class="k">pub</span><span class="w"> </span><span class="k">struct</span><span class="w"> </span><span class="nc">KmerOf</span><span class="o"><</span><span class="n">L</span><span class="p">:</span><span class="w"> </span><span class="nc">KmerLength</span><span class="o">></span><span class="p">(</span><span class="kt">u64</span><span class="p">,</span><span class="w"> </span><span class="n">PhantomData</span><span class="o"><</span><span class="n">L</span><span class="o">></span><span class="p">);</span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>Nucleotides are packed 2 bits each, <strong>left-aligned</strong>, MSB-first. Nucleotide 0 occupies bits 63–62; nucleotide i occupies bits 63−2i and 62−2i. The low 64−2k bits are always zero. k is <strong>not stored</strong> — it is a parameter of every operation that needs it, and will be owned by the future collection-level indexer.</p>
|
<p>Three marker types implement <code>KmerLength</code>:</p>
|
||||||
|
<table>
|
||||||
|
<thead>
|
||||||
|
<tr>
|
||||||
|
<th>Marker</th>
|
||||||
|
<th><code>len()</code> source</th>
|
||||||
|
<th>Used for</th>
|
||||||
|
</tr>
|
||||||
|
</thead>
|
||||||
|
<tbody>
|
||||||
|
<tr>
|
||||||
|
<td><code>KLen</code></td>
|
||||||
|
<td><code>params::k()</code></td>
|
||||||
|
<td>k-mers</td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td><code>MLen</code></td>
|
||||||
|
<td><code>params::m()</code></td>
|
||||||
|
<td>minimizers</td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td><code>ConstLen<N></code></td>
|
||||||
|
<td>const generic <code>N</code></td>
|
||||||
|
<td>tests</td>
|
||||||
|
</tr>
|
||||||
|
</tbody>
|
||||||
|
</table>
|
||||||
|
<p>Public aliases:</p>
|
||||||
|
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">type</span><span class="w"> </span><span class="nc">Kmer</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">KmerOf</span><span class="o"><</span><span class="n">KLen</span><span class="o">></span><span class="p">;</span><span class="w"> </span><span class="c1">// k-mer, global k</span>
|
||||||
|
<span class="k">pub</span><span class="w"> </span><span class="k">type</span><span class="w"> </span><span class="nc">Minimizer</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">CanonicalKmerOf</span><span class="o"><</span><span class="n">MLen</span><span class="o">></span><span class="p">;</span><span class="w"> </span><span class="c1">// canonical m-mer, global m</span>
|
||||||
|
</code></pre></div>
|
||||||
|
<p>Nucleotides are packed 2 bits each, <strong>left-aligned</strong>, MSB-first. Nucleotide 0 occupies bits 63–62; nucleotide i occupies bits 63−2i and 62−2i. The low 64−2·len bits are always zero. The length is <strong>not stored</strong> — every operation reads it from <code>L::len()</code>.</p>
|
||||||
<table>
|
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|
||||||
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|
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|
||||||
<tr>
|
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|
||||||
@@ -1071,33 +1475,41 @@
|
|||||||
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|
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|
||||||
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|
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|
||||||
</table>
|
</table>
|
||||||
|
<h2 id="global-parameters">Global parameters</h2>
|
||||||
|
<p><code>params::set_k(k)</code> / <code>params::k()</code> and <code>params::set_m(m)</code> / <code>params::m()</code> are backed by <code>OnceLock<usize></code> in production (write-once, panic on conflict) and by <code>thread_local! { Cell<usize> }</code> in test builds (per-thread, freely writable). <code>params::init(k, m)</code> sets both in one call.</p>
|
||||||
<h2 id="encoding">Encoding</h2>
|
<h2 id="encoding">Encoding</h2>
|
||||||
<p><code>Kmer::from_ascii(ascii, k)</code> encodes the first k bytes of an ASCII slice using the shared <code>ENC</code> table (see <a href="../superkmer/#ascii-encoding-and-decoding">SuperKmer — ASCII encoding</a>):</p>
|
<p><code>KmerOf::<L>::from_ascii(ascii)</code> encodes the first <code>L::len()</code> bytes using the shared <code>ENC</code> table (see <a href="../superkmer/#ascii-encoding-and-decoding">SuperKmer — ASCII encoding</a>):</p>
|
||||||
<div class="highlight"><pre><span></span><code><span class="k">for</span><span class="w"> </span><span class="n">i</span><span class="w"> </span><span class="k">in</span><span class="w"> </span><span class="mi">0</span><span class="o">..</span><span class="n">k</span><span class="w"> </span><span class="p">{</span>
|
<div class="highlight"><pre><span></span><code><span class="k">for</span><span class="w"> </span><span class="n">i</span><span class="w"> </span><span class="k">in</span><span class="w"> </span><span class="mi">0</span><span class="o">..</span><span class="n">k</span><span class="w"> </span><span class="p">{</span>
|
||||||
<span class="w"> </span><span class="n">val</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">(</span><span class="n">val</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">2</span><span class="p">)</span><span class="w"> </span><span class="o">|</span><span class="w"> </span><span class="n">encode_base</span><span class="p">(</span><span class="n">ascii</span><span class="p">[</span><span class="n">i</span><span class="p">])</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="kt">u64</span><span class="p">;</span>
|
<span class="w"> </span><span class="n">val</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">(</span><span class="n">val</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">2</span><span class="p">)</span><span class="w"> </span><span class="o">|</span><span class="w"> </span><span class="n">encode_base</span><span class="p">(</span><span class="n">ascii</span><span class="p">[</span><span class="n">i</span><span class="p">])</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="kt">u64</span><span class="p">;</span>
|
||||||
<span class="p">}</span>
|
<span class="p">}</span>
|
||||||
<span class="n">Kmer</span><span class="p">(</span><span class="n">val</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="p">(</span><span class="mi">64</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">2</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="n">k</span><span class="p">))</span>
|
<span class="n">KmerOf</span><span class="p">(</span><span class="n">val</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="p">(</span><span class="mi">64</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">2</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="n">k</span><span class="p">),</span><span class="w"> </span><span class="n">PhantomData</span><span class="p">)</span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>Zero allocation — result lives on the stack.</p>
|
<p>Zero allocation — result lives on the stack.</p>
|
||||||
<h2 id="decoding">Decoding</h2>
|
<h2 id="decoding">Decoding</h2>
|
||||||
<p><code>write_ascii(k, buf)</code> appends k ASCII characters to a caller-supplied <code>Vec<u8></code> using the shared <code>DEC4</code> table: one lookup per 4 nucleotides, two partial-byte lookups for the remainder. No allocation in the hot path.</p>
|
<p><code>write_ascii(writer)</code> writes k ASCII characters to any <code>W: Write</code> using the shared <code>DEC4</code> table: one lookup per 4 nucleotides, one partial lookup for the remainder. No allocation in the hot path.</p>
|
||||||
<p><code>to_ascii(k)</code> is a convenience wrapper that allocates and returns a <code>Vec<u8></code>; intended for tests and display only.</p>
|
<p><code>to_ascii()</code> is a convenience wrapper that allocates and returns a <code>Vec<u8></code>; intended for tests and display only.</p>
|
||||||
<h2 id="reverse-complement">Reverse complement</h2>
|
<h2 id="reverse-complement">Reverse complement</h2>
|
||||||
<p>Computed as pure arithmetic — no lookup table, no memory access:</p>
|
<p>Computed as pure arithmetic — no lookup table, no memory access:</p>
|
||||||
<div class="highlight"><pre><span></span><code><span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="o">!</span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="p">;</span><span class="w"> </span><span class="c1">// complement</span>
|
<div class="highlight"><pre><span></span><code><span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="o">!</span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="p">;</span><span class="w"> </span><span class="c1">// complement</span>
|
||||||
<span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">x</span><span class="p">.</span><span class="n">swap_bytes</span><span class="p">();</span><span class="w"> </span><span class="c1">// reverse bytes</span>
|
<span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">x</span><span class="p">.</span><span class="n">swap_bytes</span><span class="p">();</span><span class="w"> </span><span class="c1">// reverse bytes</span>
|
||||||
<span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">4</span><span class="p">)</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x0F0F0F0F0F0F0F0F</span><span class="p">)</span><span class="w"> </span><span class="o">|</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x0F0F0F0F0F0F0F0F</span><span class="p">)</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">4</span><span class="p">);</span><span class="w"> </span><span class="c1">// swap nibbles</span>
|
<span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">4</span><span class="p">)</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x0F0F0F0F0F0F0F0F</span><span class="p">)</span><span class="w"> </span><span class="o">|</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x0F0F0F0F0F0F0F0F</span><span class="p">)</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">4</span><span class="p">);</span><span class="w"> </span><span class="c1">// swap nibbles</span>
|
||||||
<span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">2</span><span class="p">)</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x3333333333333333</span><span class="p">)</span><span class="w"> </span><span class="o">|</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x3333333333333333</span><span class="p">)</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">2</span><span class="p">);</span><span class="w"> </span><span class="c1">// swap 2-bit groups</span>
|
<span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">2</span><span class="p">)</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x3333333333333333</span><span class="p">)</span><span class="w"> </span><span class="o">|</span><span class="w"> </span><span class="p">((</span><span class="n">x</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0x3333333333333333</span><span class="p">)</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">2</span><span class="p">);</span><span class="w"> </span><span class="c1">// swap 2-bit groups</span>
|
||||||
<span class="n">Kmer</span><span class="p">(</span><span class="n">x</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="p">(</span><span class="mi">64</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">2</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="n">k</span><span class="p">))</span>
|
<span class="n">KmerOf</span><span class="p">(</span><span class="n">x</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="p">(</span><span class="mi">64</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">2</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="n">k</span><span class="p">),</span><span class="w"> </span><span class="n">PhantomData</span><span class="p">)</span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>After complementing, bytes are reversed (<code>swap_bytes</code>), then nibbles, then 2-bit groups — restoring 2-bit nucleotides to their correct positions in reverse order. A final left-shift realigns to MSB. Zero allocation — result lives on the stack.</p>
|
<p>After complementing, bytes are reversed (<code>swap_bytes</code>), then nibbles, then 2-bit groups — restoring 2-bit nucleotides to their correct positions in reverse order. A final left-shift realigns to MSB. Zero allocation — result lives on the stack.</p>
|
||||||
<h2 id="canonical-form">Canonical form</h2>
|
<h2 id="canonical-form-and-canonicalkmerof">Canonical form and <code>CanonicalKmerOf</code></h2>
|
||||||
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">canonical</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">,</span><span class="w"> </span><span class="n">k</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">Self</span><span class="w"> </span><span class="p">{</span>
|
<p><code>canonical()</code> returns a <code>CanonicalKmerOf<L></code> — a distinct newtype that carries the same <code>u64</code> layout but enforces the invariant that the stored value equals <code>min(kmer, revcomp)</code>:</p>
|
||||||
<span class="w"> </span><span class="kd">let</span><span class="w"> </span><span class="n">rc</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">revcomp</span><span class="p">(</span><span class="n">k</span><span class="p">);</span>
|
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">canonical</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">CanonicalKmerOf</span><span class="o"><</span><span class="n">L</span><span class="o">></span><span class="w"> </span><span class="p">{</span>
|
||||||
<span class="w"> </span><span class="k">if</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o"><=</span><span class="w"> </span><span class="n">rc</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="o">*</span><span class="bp">self</span><span class="w"> </span><span class="p">}</span><span class="w"> </span><span class="k">else</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="n">rc</span><span class="w"> </span><span class="p">}</span>
|
<span class="w"> </span><span class="kd">let</span><span class="w"> </span><span class="n">rc</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">revcomp</span><span class="p">();</span>
|
||||||
|
<span class="w"> </span><span class="n">CanonicalKmerOf</span><span class="p">(</span><span class="k">if</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o"><=</span><span class="w"> </span><span class="n">rc</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="p">}</span><span class="w"> </span><span class="k">else</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="n">rc</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="p">},</span><span class="w"> </span><span class="n">PhantomData</span><span class="p">)</span>
|
||||||
<span class="p">}</span>
|
<span class="p">}</span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>Lexicographic minimum of forward and reverse-complement, comparing the raw <code>u64</code> values directly (left-aligned encoding makes this equivalent to nucleotide-wise comparison). Zero allocation — result lives on the stack.</p>
|
<p>Lexicographic minimum of forward and reverse-complement, comparing the raw <code>u64</code> values directly (left-aligned encoding makes this equivalent to nucleotide-wise comparison). Zero allocation — result lives on the stack.</p>
|
||||||
|
<p><code>CanonicalKmerOf::from_raw_unchecked(raw)</code> is the only other public constructor, for trusted paths such as deserialisation.</p>
|
||||||
|
<h2 id="sliding-window-helpers">Sliding window helpers</h2>
|
||||||
|
<p><code>push_right(nuc)</code> / <code>push_left(nuc)</code> shift the window by one base in O(1). <code>is_overlapping(other)</code> checks whether the last k−1 nucleotides of <code>self</code> equal the first k−1 of <code>other</code>.</p>
|
||||||
|
<h2 id="hashing">Hashing</h2>
|
||||||
|
<p><code>hash_kmer(raw: u64) -> u64</code> computes <code>mix64(raw ^ 0x9e3779b97f4a7c15)</code>, the seeded splitmix64 finalizer. <code>CanonicalKmerOf::seq_hash()</code> delegates to <code>hash_kmer</code>.</p>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
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||||||
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|
||||||
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||||||
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||||||
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|
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|
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|
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|
||||||
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|
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|
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|
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|
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||||||
|
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|
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|
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Central-position SNP distance (discussion)
|
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|
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|
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|
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|
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|
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|
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|
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Evidence modes
|
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|
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|
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|
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|
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|
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|
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Build functions
|
||||||
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|
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|
||||||
|
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|
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|
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|
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|
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|
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|
||||||
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|
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|
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|
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<h2 id="why-two-phases-are-needed">Why two phases are needed</h2>
|
<h2 id="why-two-phases-are-needed">Why two phases are needed</h2>
|
||||||
<p>Kmer indexing per partition proceeds in two phases. The separation is necessary because the exact number of surviving unique kmers is not known until after counting and filtering low-abundance kmers.</p>
|
<p>Kmer indexing per partition proceeds in two phases. The separation is necessary because the exact number of surviving unique kmers is not known until after counting and filtering low-abundance kmers.</p>
|
||||||
<h3 id="phase-1-provisional-mphf-kmer-spectrum">Phase 1 — provisional MPHF + kmer spectrum</h3>
|
<h3 id="phase-1-provisional-mphf-kmer-spectrum">Phase 1 — provisional MPHF + kmer spectrum</h3>
|
||||||
<p>Implemented in <code>obikpartitionner::KmerPartition::count_kmer()</code>.</p>
|
<p>Implemented in <code>obikpartitionner::KmerPartition::count_kmer()</code> → <code>count_partition()</code>.</p>
|
||||||
<ol>
|
<ol>
|
||||||
<li><strong>Pass 1</strong>: read the dereplicated superkmer file; enumerate all unique canonical kmers into a <code>HashSet</code>. Exact count known after this pass.</li>
|
<li><strong>External sort</strong>: read the dereplicated superkmer file; extract the raw <code>u64</code> canonical kmer value for every kmer of every superkmer. Sort in RAM-bounded chunks (adaptive budget: 40% of available RAM ÷ n_threads, minimum 1 M kmers per chunk), then k-way merge with inline dedup. Result: <code>sorted_unique.bin</code> — a flat array of f0 distinct sorted <code>u64</code> values. Exact kmer count f0 is known at this point.</li>
|
||||||
<li><strong>Build a provisional MPHF</strong> (<code>GOFunction</code> from the <code>ph</code> crate) over the exact kmer set. Produces <code>mphf1.bin</code>.</li>
|
<li><strong>Build provisional MPHF</strong> (ptr_hash, same configuration as phase 2) over <code>sorted_unique.bin</code> using <code>new_from_par_iter</code>. Delete <code>sorted_unique.bin</code> immediately after. Persist to <code>mphf1.bin</code>.</li>
|
||||||
<li><strong>Create <code>counts1.bin</code></strong>: one zero-initialised <code>u32</code> per MPHF slot (mmap'd).</li>
|
<li><strong>Create <code>counts1.bin</code></strong>: <code>PersistentCompactIntVec</code> with f0 slots, zero-initialised.</li>
|
||||||
<li><strong>Pass 2</strong>: re-read the dereplicated file; for each kmer, query <code>mphf1.get(kmer)</code> and atomically accumulate the superkmer count into <code>counts1[slot]</code>.</li>
|
<li><strong>Accumulation pass</strong>: re-read the dereplicated superkmer file; for each kmer in each superkmer, compute <code>slot = mphf.index(kmer.raw())</code> and increment <code>counts1[slot]</code> by the superkmer's COUNT.</li>
|
||||||
<li><strong>Build kmer frequency spectrum</strong> from <code>counts1</code>: histogram <code>{count → n_kmers}</code>, totals f0 (distinct kmers) and f1 (total abundance). Written to <code>kmer_spectrum_raw.json</code> per partition, then merged globally.</li>
|
<li><strong>Build kmer frequency spectrum</strong> from <code>counts1</code>: histogram <code>{count → n_kmers}</code>, totals f0 (distinct kmers) and f1 (total abundance). Written to <code>kmer_spectrum_raw.json</code> per partition, then merged globally.</li>
|
||||||
</ol>
|
</ol>
|
||||||
<p>Files produced per partition:</p>
|
<p>Files produced per partition:</p>
|
||||||
<div class="highlight"><pre><span></span><code>part_XXXXX/
|
<div class="highlight"><pre><span></span><code>part_XXXXX/
|
||||||
mphf1.bin — GOFunction (provisional MPHF, discarded after phase 2)
|
mphf1.bin — ptr_hash provisional MPHF (discarded after phase 2)
|
||||||
counts1.bin — [u32; n_kmers] kmer counts, mmap'd
|
counts1.bin — PersistentCompactIntVec, f0 × u32 kmer counts
|
||||||
kmer_spectrum_raw.json — local frequency spectrum
|
kmer_spectrum_raw.json — local frequency spectrum
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<h3 id="phase-2-definitive-mphf">Phase 2 — definitive MPHF</h3>
|
<h3 id="phase-2-definitive-mphf">Phase 2 — definitive MPHF</h3>
|
||||||
<p>After filtering (applying a min-count threshold derived from the spectrum) and building the local De Bruijn graph + unitigs (see <a href="../pipeline/">Construction pipeline</a>), the exact filtered kmer set is available via <code>unitigs.bin</code>.</p>
|
<p>After filtering (applying a min-count threshold derived from the spectrum) and building the local De Bruijn graph + unitigs (see <a href="../pipeline/">Construction pipeline</a>), the exact filtered kmer set is available via <code>unitigs.bin</code>.</p>
|
||||||
<p><code>MphfLayer::build</code> is called on the unitig file:</p>
|
<p><code>MphfLayer::build(dir, block_bits, mode: &IndexMode, fill_slot)</code> is called on the unitig directory:</p>
|
||||||
<ol>
|
<ol>
|
||||||
<li><strong>Pass 1</strong>: iterate all canonical kmers from <code>unitigs.bin</code> in parallel, build and store <code>mphf.bin</code> (ptr_hash).</li>
|
<li><strong>Pass 1</strong> (parallel): a <code>CanonicalKmerIter</code> — clonable via <code>Arc<Mmap></code>, no file reopening — is passed directly to <code>new_from_par_iter</code> via <code>par_bridge()</code>. No <code>.idx</code> is read or created at this stage; parallelism is at partition/layer level, not within a single MPHF. Produces <code>mphf.bin</code>.</li>
|
||||||
<li><strong>Pass 2</strong>: iterate sequentially, fill <code>evidence.bin</code>, call the mode-specific <code>fill_slot</code> callback.</li>
|
<li><strong>Pass 2</strong> (sequential): iterate with <code>iter_indexed_canonical_kmers</code>; fill evidence files; call <code>fill_slot(slot, kmer)</code> callback per kmer. For Exact/Hybrid, <code>.idx</code> is written at the end of this pass — never earlier.</li>
|
||||||
</ol>
|
</ol>
|
||||||
<p><code>mphf1.bin</code> and <code>counts1.bin</code> are no longer needed after phase 2 and can be deleted.</p>
|
<p><code>mphf1.bin</code> and <code>counts1.bin</code> are no longer needed after phase 2 and can be deleted.</p>
|
||||||
<hr />
|
<hr />
|
||||||
@@ -1265,13 +1616,11 @@
|
|||||||
<p><strong>FMPH/FMPHGO</strong> (<code>ph</code> crate, Beling, ACM JEA 2023):</p>
|
<p><strong>FMPH/FMPHGO</strong> (<code>ph</code> crate, Beling, ACM JEA 2023):</p>
|
||||||
<ul>
|
<ul>
|
||||||
<li>~2.1 bits/key — most compact; good query speed; deterministic construction</li>
|
<li>~2.1 bits/key — most compact; good query speed; deterministic construction</li>
|
||||||
<li>Works well from an exact or slightly overestimated count</li>
|
<li><code>GOFunction</code> (group-oriented variant) was the original phase-1 choice; eliminated when the external sort made the exact count available at phase 1 as well</li>
|
||||||
<li><code>GOFunction</code> (group-oriented variant) is the specific type used</li>
|
|
||||||
</ul>
|
</ul>
|
||||||
<h2 id="mphf-choice-per-phase">MPHF choice per phase</h2>
|
<h2 id="mphf-choice-per-phase">MPHF choice per phase</h2>
|
||||||
<p><strong>Phase 1</strong> (provisional, discarded after spectrum computation): <code>ph::fmph::GOFunction</code>. Compact, fast to build from the exact post-dedup kmer set. Query speed is secondary — the structure is only used during pass 2 of <code>count_kmer</code>.</p>
|
<p><strong>Both phases</strong>: <strong>ptr_hash</strong>, same type alias and construction parameters. The external sort (phase 1) and the unitig index (phase 2) both provide the exact key count before MPHF construction, so ptr_hash's requirement is satisfied in both cases. Using a single MPHF implementation removes the <code>ph</code> crate dependency.</p>
|
||||||
<p><strong>Phase 2</strong> (persistent, queried repeatedly): <strong>ptr_hash</strong>. Exact key count is available from the unitig index; ptr_hash query speed (≥2.1×) and construction speed (≥3.1× over FMPH) are the decisive factors. The 2.4 bits/key overhead is acceptable.</p>
|
<p>boomphf: eliminated — largest space overhead, streaming advantage no longer needed. FMPH/GOFunction: eliminated — exact count available, ptr_hash is faster at equivalent compactness.</p>
|
||||||
<p>boomphf is eliminated: largest space overhead, streaming advantage does not apply.</p>
|
|
||||||
<hr />
|
<hr />
|
||||||
<h2 id="space-at-scale">Space at scale</h2>
|
<h2 id="space-at-scale">Space at scale</h2>
|
||||||
<p>For 1 024 partitions × 100 M kmers/partition (phase 2 index, after filtering):</p>
|
<p>For 1 024 partitions × 100 M kmers/partition (phase 2 index, after filtering):</p>
|
||||||
@@ -1320,9 +1669,12 @@
|
|||||||
<h3 id="layer-structure">Layer structure</h3>
|
<h3 id="layer-structure">Layer structure</h3>
|
||||||
<p>Each layer is a self-contained unit. See <a href="../obilayeredmap/">obilayeredmap</a> for the full on-disk layout. The MPHF-relevant files are:</p>
|
<p>Each layer is a self-contained unit. See <a href="../obilayeredmap/">obilayeredmap</a> for the full on-disk layout. The MPHF-relevant files are:</p>
|
||||||
<div class="highlight"><pre><span></span><code>layer_i/
|
<div class="highlight"><pre><span></span><code>layer_i/
|
||||||
unitigs.bin — packed 2-bit nucleotide sequences (kmer evidence)
|
unitigs.bin — packed 2-bit nucleotide sequences (kmer evidence source)
|
||||||
|
unitigs.bin.idx — random-access block index (block_bits controls granularity)
|
||||||
mphf.bin — ptr_hash phase-2 MPHF
|
mphf.bin — ptr_hash phase-2 MPHF
|
||||||
evidence.bin — n × u32: (chunk_id: 25 bits | rank: 7 bits) per slot
|
evidence.bin — n × (chunk_id: 25 bits | rank: 7 bits) per slot [exact mode]
|
||||||
|
fingerprint.bin — n × b-bit fingerprints per slot [approx mode]
|
||||||
|
[no layer_meta.json — mode stored once in partition-level meta.json]
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>Layers are <strong>disjoint</strong>: a canonical kmer belongs to exactly one layer. Layer 0 is built from dataset A. Adding dataset B:</p>
|
<p>Layers are <strong>disjoint</strong>: a canonical kmer belongs to exactly one layer. Layer 0 is built from dataset A. Adding dataset B:</p>
|
||||||
<ol>
|
<ol>
|
||||||
@@ -1330,17 +1682,43 @@
|
|||||||
<li>Collect kmers of B not present in any layer → set <code>B \ A</code>.</li>
|
<li>Collect kmers of B not present in any layer → set <code>B \ A</code>.</li>
|
||||||
<li>Build layer 1 from <code>B \ A</code> (dereplicate → count → De Bruijn → unitigs → <code>MphfLayer::build</code>).</li>
|
<li>Build layer 1 from <code>B \ A</code> (dereplicate → count → De Bruijn → unitigs → <code>MphfLayer::build</code>).</li>
|
||||||
</ol>
|
</ol>
|
||||||
|
<h3 id="evidence-modes">Evidence modes</h3>
|
||||||
|
<p>Three evidence modes are supported via <code>IndexMode</code>, stored once in <code>PartitionMeta</code> at partition root. There is no <code>layer_meta.json</code>.</p>
|
||||||
|
<p><strong>Exact</strong> (<code>IndexMode::Exact</code>): <code>evidence.bin</code> stores one <code>(chunk_id, rank)</code> pair per MPHF slot. Verification reconstructs the kmer and compares to the query. Zero false positives. <code>.idx</code> required at query time.</p>
|
||||||
|
<p><strong>Approx</strong> (<code>IndexMode::Approx { b, z }</code>): <code>fingerprint.bin</code> stores a b-bit hash per slot. False-positive rate 1/2^b per query; Findere z-parameter reduces window FP to ≈ 1/2^(b·z). No <code>.idx</code> written or needed.</p>
|
||||||
|
<p><strong>Hybrid</strong> (<code>IndexMode::Hybrid { b, z }</code>): both <code>fingerprint.bin</code> and <code>evidence.bin</code> + <code>.idx</code>. <code>find()</code> uses the fingerprint (O(1)); <code>find_strict()</code> uses exact evidence (O(1)).</p>
|
||||||
|
<h3 id="build-functions">Build functions</h3>
|
||||||
|
<div class="highlight"><pre><span></span><code>MphfLayer::build(dir, block_bits, mode: &IndexMode, fill_slot)
|
||||||
|
Pass 1: CanonicalKmerIter + par_bridge() → build mphf.bin (no .idx used)
|
||||||
|
Pass 2: sequential iter → fill evidence files + call fill_slot
|
||||||
|
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|
||||||
|
|
||||||
|
MphfLayer::build_exact_evidence(dir, block_bits)
|
||||||
|
Post-hoc: builds evidence.bin + .idx from existing mphf.bin + unitigs.bin
|
||||||
|
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|
||||||
|
|
||||||
|
MphfLayer::build_approx_evidence(dir, b, z)
|
||||||
|
Post-hoc: builds fingerprint.bin from existing mphf.bin + unitigs.bin
|
||||||
|
Uses open_sequential(); never writes .idx
|
||||||
|
</code></pre></div>
|
||||||
|
<p>There is no <code>build_evidence</code> dispatch wrapper. Callers choose the appropriate post-hoc build directly.</p>
|
||||||
|
<p>In <code>obikpartitionner</code>, <code>build_index_layer</code> receives <code>block_bits: u8</code> from <code>IndexConfig::block_bits</code> and forwards it directly to <code>Layer::build</code> and <code>Layer::build_approx_evidence</code>.</p>
|
||||||
<h3 id="membership-verification">Membership verification</h3>
|
<h3 id="membership-verification">Membership verification</h3>
|
||||||
<p>ptr_hash maps any input to a valid slot — it does not natively detect absent keys. Membership is verified using the evidence entry: decode the kmer from <code>(chunk_id, rank)</code> and compare to the query. A mismatch means the kmer is absent from this layer; probe the next layer.</p>
|
<p>ptr_hash maps any input to a valid slot — it does not natively detect absent keys. Membership is verified using the evidence entry:</p>
|
||||||
|
<ul>
|
||||||
|
<li><strong>Exact</strong>: decode <code>(chunk_id, rank)</code> from <code>evidence.bin</code>; reconstruct the kmer via <code>unitigs.verify_canonical_kmer</code>; compare to query.</li>
|
||||||
|
<li><strong>Approx</strong>: compare <code>kmer.seq_hash()</code> to the b-bit fingerprint stored at the slot.</li>
|
||||||
|
</ul>
|
||||||
|
<p>A mismatch in either mode means the kmer is absent from this layer; probe the next layer.</p>
|
||||||
<h3 id="query-algorithm">Query algorithm</h3>
|
<h3 id="query-algorithm">Query algorithm</h3>
|
||||||
<div class="highlight"><pre><span></span><code>fn query(kmer) → Option<(layer_index, slot)>:
|
<div class="highlight"><pre><span></span><code>fn query(kmer) → Option<(layer_index, slot)>:
|
||||||
for (i, layer) in layers.iter().enumerate():
|
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|
||||||
slot = layer.mphf.index(kmer)
|
slot = layer.mphf.index(kmer)
|
||||||
if layer.evidence.decode(slot) matches kmer:
|
if layer.evidence.matches(slot, kmer): // exact or approx dispatch
|
||||||
return Some((i, slot))
|
return Some((i, slot))
|
||||||
return None
|
return None
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>Expected probe depth: 1 for kmers in layer 0. Each probe is a ptr_hash lookup (~10 ns) plus one evidence decode.</p>
|
<p><code>MphfLayer::find</code> dispatches on <code>LayerEvidence</code> at O(1) — no panicking <code>find_exact</code>/<code>find_approx</code> methods. <code>find_strict</code> always performs an exact check: O(1) for Exact/Hybrid, O(n) sequential scan for Approx. Expected probe depth: 1 for kmers in layer 0. Each probe is a ptr_hash lookup (~10 ns) plus one evidence check.</p>
|
||||||
<h3 id="merging-layers">Merging layers</h3>
|
<h3 id="merging-layers">Merging layers</h3>
|
||||||
<p>Two layer chains can be merged by re-indexing their union through the full pipeline. This is expensive (full rebuild) but produces an optimal single-layer index. Merge is a maintenance operation, not a query-path requirement.</p>
|
<p>Two layer chains can be merged by re-indexing their union through the full pipeline. This is expensive (full rebuild) but produces an optimal single-layer index. Merge is a maintenance operation, not a query-path requirement.</p>
|
||||||
|
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make_pipe! DSL
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|
||||||
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|
||||||
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||||||
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|
||||||
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||||||
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||||||
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Kmer filtering
|
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|
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|
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|
||||||
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|
||||||
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||||||
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||||||
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|
||||||
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|
||||||
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||||||
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||||||
|
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|
||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../architecture/numa_partition_runner/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
NUMA-aware partition runner
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
|
|
||||||
@@ -1087,6 +1405,17 @@
|
|||||||
</span>
|
</span>
|
||||||
</a>
|
</a>
|
||||||
|
|
||||||
|
</li>
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="#make_pipe-dsl" class="md-nav__link">
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
make_pipe! DSL
|
||||||
|
|
||||||
|
</span>
|
||||||
|
</a>
|
||||||
|
|
||||||
</li>
|
</li>
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
@@ -1145,7 +1474,7 @@
|
|||||||
|
|
||||||
|
|
||||||
<h1 id="obipipeline-parallel-pipeline-library">obipipeline — parallel pipeline library</h1>
|
<h1 id="obipipeline-parallel-pipeline-library">obipipeline — parallel pipeline library</h1>
|
||||||
<p><code>obipipeline</code> is a generic, multi-threaded data pipeline crate. It connects a <strong>source</strong>, a chain of <strong>transforms</strong>, and a <strong>sink</strong> via crossbeam channels, running each stage with a shared worker pool and a biased scheduler.</p>
|
<p><code>obipipeline</code> is a generic, multi-threaded data pipeline crate. It connects a <strong>source</strong>, a chain of <strong>stages</strong>, and a <strong>sink</strong> via crossbeam channels, running each stage with a shared worker pool and a biased scheduler.</p>
|
||||||
<h2 id="core-types">Core types</h2>
|
<h2 id="core-types">Core types</h2>
|
||||||
<table>
|
<table>
|
||||||
<thead>
|
<thead>
|
||||||
@@ -1158,22 +1487,33 @@
|
|||||||
<tbody>
|
<tbody>
|
||||||
<tr>
|
<tr>
|
||||||
<td><code>SourceFn<D></code></td>
|
<td><code>SourceFn<D></code></td>
|
||||||
<td><code>Box<dyn FnMut() -> Result<D, PipelineError> + Send+Sync></code></td>
|
<td><code>Box<dyn FnMut() -> Result<D, PipelineError> + Send></code></td>
|
||||||
<td>Called repeatedly; <code>FnMut</code> because it holds iterator state</td>
|
<td>Called repeatedly; <code>FnMut</code> because it holds iterator state</td>
|
||||||
</tr>
|
</tr>
|
||||||
<tr>
|
<tr>
|
||||||
<td><code>SharedFn<D></code></td>
|
<td><code>SharedFn<D></code></td>
|
||||||
<td><code>Arc<dyn Fn(D) -> Result<D, PipelineError> + Send+Sync></code></td>
|
<td><code>Arc<dyn Fn(D) -> Result<D, PipelineError> + Send + Sync></code></td>
|
||||||
<td>Shared across workers via <code>Arc::clone</code> (no copy of the closure)</td>
|
<td>1→1 transform shared across workers via <code>Arc::clone</code></td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td><code>SharedFlatFn<D></code></td>
|
||||||
|
<td><code>Arc<dyn Fn(D, &Sender<Result<D, _>>, &Sender<isize>) + Send + Sync></code></td>
|
||||||
|
<td>1→N transform; pushes items into channel, sends delta</td>
|
||||||
</tr>
|
</tr>
|
||||||
<tr>
|
<tr>
|
||||||
<td><code>SinkFn<D></code></td>
|
<td><code>SinkFn<D></code></td>
|
||||||
<td><code>Box<dyn Fn(D) -> Result<(), PipelineError> + Send+Sync></code></td>
|
<td><code>Box<dyn Fn(D) -> Result<(), PipelineError> + Send></code></td>
|
||||||
<td>Final consumer; returns <code>Result</code> so errors propagate back</td>
|
<td>Final consumer; returns <code>Result</code> so errors propagate back</td>
|
||||||
</tr>
|
</tr>
|
||||||
</tbody>
|
</tbody>
|
||||||
</table>
|
</table>
|
||||||
<p><code>Pipeline<D></code> holds one <code>SourceFn</code>, a <code>Vec<SharedFn></code>, and one <code>SinkFn</code>.<br />
|
<p>Stages come in two variants:</p>
|
||||||
|
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">enum</span><span class="w"> </span><span class="nc">Stage</span><span class="o"><</span><span class="n">D</span><span class="o">></span><span class="w"> </span><span class="p">{</span>
|
||||||
|
<span class="w"> </span><span class="n">Transform</span><span class="p">(</span><span class="n">SharedFn</span><span class="o"><</span><span class="n">D</span><span class="o">></span><span class="p">),</span><span class="w"> </span><span class="c1">// 1→1</span>
|
||||||
|
<span class="w"> </span><span class="n">Flat</span><span class="p">(</span><span class="n">SharedFlatFn</span><span class="o"><</span><span class="n">D</span><span class="o">></span><span class="p">),</span><span class="w"> </span><span class="c1">// 1→N</span>
|
||||||
|
<span class="p">}</span>
|
||||||
|
</code></pre></div>
|
||||||
|
<p><code>Pipeline<D></code> holds one <code>SourceFn</code>, a <code>Vec<Stage></code>, and one <code>SinkFn</code>.<br />
|
||||||
<code>WorkerPool<D></code> wraps a <code>Pipeline</code> with <code>n_workers</code> and channel <code>capacity</code>.</p>
|
<code>WorkerPool<D></code> wraps a <code>Pipeline</code> with <code>n_workers</code> and channel <code>capacity</code>.</p>
|
||||||
<h2 id="workerpool">WorkerPool</h2>
|
<h2 id="workerpool">WorkerPool</h2>
|
||||||
<div class="highlight"><pre><span></span><code><span class="n">WorkerPool</span><span class="p">::</span><span class="n">new</span><span class="p">(</span><span class="n">pipeline</span><span class="p">:</span><span class="w"> </span><span class="nc">Pipeline</span><span class="o"><</span><span class="n">D</span><span class="o">></span><span class="p">,</span><span class="w"> </span><span class="n">n_workers</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">,</span><span class="w"> </span><span class="n">capacity</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">Self</span>
|
<div class="highlight"><pre><span></span><code><span class="n">WorkerPool</span><span class="p">::</span><span class="n">new</span><span class="p">(</span><span class="n">pipeline</span><span class="p">:</span><span class="w"> </span><span class="nc">Pipeline</span><span class="o"><</span><span class="n">D</span><span class="o">></span><span class="p">,</span><span class="w"> </span><span class="n">n_workers</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">,</span><span class="w"> </span><span class="n">capacity</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nc">Self</span>
|
||||||
@@ -1193,7 +1533,7 @@
|
|||||||
</tr>
|
</tr>
|
||||||
<tr>
|
<tr>
|
||||||
<td><code>capacity</code></td>
|
<td><code>capacity</code></td>
|
||||||
<td>Bound on every crossbeam channel in the pipeline (source output, inter-stage channels, worker input, sink input, sink error). Controls memory and back-pressure: a full channel blocks the sender until a slot frees.</td>
|
<td>Bound on every crossbeam channel in the pipeline. Controls memory and back-pressure: a full channel blocks the sender until a slot frees.</td>
|
||||||
</tr>
|
</tr>
|
||||||
</tbody>
|
</tbody>
|
||||||
</table>
|
</table>
|
||||||
@@ -1208,7 +1548,7 @@
|
|||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>Each variant carries the concrete type for one stage's output. The macros pattern-match on this enum to route values between stages.</p>
|
<p>Each variant carries the concrete type for one stage's output. The macros pattern-match on this enum to route values between stages.</p>
|
||||||
<h2 id="macros">Macros</h2>
|
<h2 id="macros">Macros</h2>
|
||||||
<p>Six low-level macros build individual stages; one high-level macro (<code>make_pipeline!</code>) composes them.</p>
|
<p>Eight low-level macros build individual stages; one high-level macro (<code>make_pipeline!</code>) composes them.</p>
|
||||||
<h3 id="low-level">Low-level</h3>
|
<h3 id="low-level">Low-level</h3>
|
||||||
<div class="highlight"><pre><span></span><code><span class="n">make_source</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">iterator</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// iterator yields T</span>
|
<div class="highlight"><pre><span></span><code><span class="n">make_source</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">iterator</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// iterator yields T</span>
|
||||||
<span class="n">make_source_fallible</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">iterator</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// iterator yields Result<T, E></span>
|
<span class="n">make_source_fallible</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">iterator</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// iterator yields Result<T, E></span>
|
||||||
@@ -1216,6 +1556,9 @@
|
|||||||
<span class="n">make_transform</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> U</span>
|
<span class="n">make_transform</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> U</span>
|
||||||
<span class="n">make_transform_fallible</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> Result<U, E></span>
|
<span class="n">make_transform_fallible</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> Result<U, E></span>
|
||||||
|
|
||||||
|
<span class="n">make_flat_transform</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> impl IntoIterator<Item=U></span>
|
||||||
|
<span class="n">make_flat_transform_fallible</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">,</span><span class="w"> </span><span class="n">OutputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> Result<impl IntoIterator<Item=U>, E></span>
|
||||||
|
|
||||||
<span class="n">make_sink</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> ()</span>
|
<span class="n">make_sink</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> ()</span>
|
||||||
<span class="n">make_sink_fallible</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> Result<(), E></span>
|
<span class="n">make_sink_fallible</span><span class="o">!</span><span class="p">(</span><span class="n">Enum</span><span class="p">,</span><span class="w"> </span><span class="n">func</span><span class="p">,</span><span class="w"> </span><span class="n">InputVariant</span><span class="p">)</span><span class="w"> </span><span class="c1">// func: T -> Result<(), E></span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
@@ -1224,17 +1567,31 @@
|
|||||||
<div class="highlight"><pre><span></span><code>make_pipeline! {
|
<div class="highlight"><pre><span></span><code>make_pipeline! {
|
||||||
DataEnum,
|
DataEnum,
|
||||||
source iterator => OutputVariant, // or source? for fallible
|
source iterator => OutputVariant, // or source? for fallible
|
||||||
| func: In => Out, // non-fallible transform
|
| func: In => Out, // 1→1 non-fallible transform
|
||||||
|? func: In => Out, // fallible transform
|
|? func: In => Out, // 1→1 fallible transform
|
||||||
|
|| func: In => Out, // 1→N non-fallible flat transform
|
||||||
|
||? func: In => Out, // 1→N fallible flat transform
|
||||||
sink func @ InputVariant, // or sink? for fallible
|
sink func @ InputVariant, // or sink? for fallible
|
||||||
}
|
}
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p><code>?</code> marks fallibility on source, individual transforms, or sink independently.<br />
|
<p><code>?</code> marks fallibility on source, individual transforms, or sink independently.<br />
|
||||||
Implemented as a <strong>TT muncher</strong>: the internal rule <code>@build</code> recurses over transform tokens one at a time, accumulating them into a <code>vec![]</code>, then terminates on <code>sink</code>/<code>sink?</code>.</p>
|
Implemented as a <strong>TT muncher</strong>: the internal rule <code>@build</code> recurses over transform tokens one at a time, accumulating them into a <code>vec![]</code>, then terminates on <code>sink</code>/<code>sink?</code>.</p>
|
||||||
|
<h3 id="make_pipe-dsl">make_pipe! DSL</h3>
|
||||||
|
<p><code>make_pipe!</code> builds a sourceless/sinkless <code>Pipe<D, In, Out></code> — a reusable, composable stage sequence:</p>
|
||||||
|
<div class="highlight"><pre><span></span><code>make_pipe! {
|
||||||
|
DataEnum : InType => OutType,
|
||||||
|
| func: InVariant => OutVariant,
|
||||||
|
|? func: InVariant => OutVariant,
|
||||||
|
|| func: InVariant => OutVariant,
|
||||||
|
||? func: InVariant => OutVariant,
|
||||||
|
}
|
||||||
|
</code></pre></div>
|
||||||
|
<p>Two pipes compose with <code>.then(other)</code>. Apply to an iterator with <code>.apply(iter, n_workers, capacity)</code> to get a <code>PipeIter<Out></code> — an iterator over the pipeline output, backed by a background <code>WorkerPool</code>. The scatter step in <code>obikmer</code> uses <code>make_pipe!</code> and <code>.apply()</code> rather than the full <code>make_pipeline!</code> / <code>WorkerPool</code> pattern.</p>
|
||||||
<h2 id="scheduler-architecture">Scheduler architecture</h2>
|
<h2 id="scheduler-architecture">Scheduler architecture</h2>
|
||||||
<div class="highlight"><pre><span></span><code>Source thread ──► [source_rx] ──► Scheduler ──► [worker_tx] ──► Workers (×N)
|
<div class="highlight"><pre><span></span><code>Source thread ──► [source_rx] ──► Scheduler ──► [worker_tx] ──► Workers (×N)
|
||||||
▲ │
|
▲ │
|
||||||
[stage_rxs] ────────┘◄──────────────────────────────┘
|
[stage_rxs] ────────┘◄──────────────────────────────┘
|
||||||
|
[flat_delta_rx] ──► Scheduler (in_flight adjustment)
|
||||||
│
|
│
|
||||||
[sink_err_rx] ← errors from sink (highest priority)
|
[sink_err_rx] ← errors from sink (highest priority)
|
||||||
│
|
│
|
||||||
@@ -1242,20 +1599,20 @@ Implemented as a <strong>TT muncher</strong>: the internal rule <code>@build</co
|
|||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>The scheduler is a single thread running a biased <code>Select</code> over all input channels. Priority order (highest first):</p>
|
<p>The scheduler is a single thread running a biased <code>Select</code> over all input channels. Priority order (highest first):</p>
|
||||||
<div class="highlight"><pre><span></span><code>index 0 sink_err_rx abort on sink error
|
<div class="highlight"><pre><span></span><code>index 0 sink_err_rx abort on sink error
|
||||||
index 1 stage_rxs[N-1] drain last stage first
|
index 1 flat_delta_rx adjust in_flight before dispatching
|
||||||
...
|
index 2..=n+1 stage_rxs[n-1..0] drain last stage first
|
||||||
index N stage_rxs[0]
|
index n+2 source_rx pull new data last
|
||||||
index N+1 source_rx pull new data last
|
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>This back-pressure-friendly ordering ensures downstream stages are drained before new items enter the pipeline.</p>
|
<p>This back-pressure-friendly ordering ensures downstream stages are drained before new items enter the pipeline.</p>
|
||||||
<p><strong>Workers</strong> are generic: each receives <code>(data, SharedFn, result_tx)</code> and calls <code>f(data)</code>, sending the result to the provided channel. The scheduler decides which transform to apply and where to route the result.</p>
|
<p><strong>Workers</strong> are generic: each receives a <code>WorkerTask</code> — either <code>Transform(data, stage_idx)</code> or <code>Flat(data, stage_idx)</code>. For <code>Transform</code>, the worker calls <code>f(data)</code> and sends the result to <code>stage_txs[stage_idx]</code>. For <code>Flat</code>, the worker calls <code>f(data, &push_tx, &delta_tx)</code>: the closure pushes N items into <code>push_tx</code> then sends <code>N-1</code> to <code>delta_tx</code>. The scheduler uses the delta to adjust <code>in_flight</code> without knowing N in advance.</p>
|
||||||
<p><strong>Termination</strong> uses an <code>in_flight</code> counter:</p>
|
<p><strong>Termination</strong> uses an <code>in_flight: isize</code> counter and a <code>flat_workers_active: usize</code> counter:</p>
|
||||||
<ul>
|
<ul>
|
||||||
<li>incremented when an item is dispatched from source to workers</li>
|
<li><code>in_flight</code> incremented when an item is dispatched from source to workers</li>
|
||||||
<li>decremented when the item exits the last stage</li>
|
<li><code>in_flight</code> decremented when the item exits the last stage to the sink</li>
|
||||||
<li>the loop exits only when <code>source_done && in_flight == 0</code></li>
|
<li><code>flat_workers_active</code> incremented when a <code>Flat</code> task is dispatched, decremented when the delta arrives</li>
|
||||||
|
<li>the loop exits only when <code>source_done && in_flight == 0 && flat_workers_active == 0</code></li>
|
||||||
</ul>
|
</ul>
|
||||||
<p>This guarantees all in-flight items complete before <code>join()</code>.</p>
|
<p>This guarantees all in-flight items complete (including all N outputs of a flat stage) before <code>join()</code>.</p>
|
||||||
<h2 id="error-handling">Error handling</h2>
|
<h2 id="error-handling">Error handling</h2>
|
||||||
<p><code>PipelineError</code> has four variants:</p>
|
<p><code>PipelineError</code> has four variants:</p>
|
||||||
<table>
|
<table>
|
||||||
@@ -1279,7 +1636,7 @@ index N+1 source_rx pull new data last
|
|||||||
<td>Internal routing error</td>
|
<td>Internal routing error</td>
|
||||||
</tr>
|
</tr>
|
||||||
<tr>
|
<tr>
|
||||||
<td><code>StepError(Box<dyn Error>)</code></td>
|
<td><code>StepError(Box<dyn Error + Send + Sync>)</code></td>
|
||||||
<td>Error from user code (wrapped by <code>make_*_fallible!</code>)</td>
|
<td>Error from user code (wrapped by <code>make_*_fallible!</code>)</td>
|
||||||
</tr>
|
</tr>
|
||||||
</tbody>
|
</tbody>
|
||||||
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Load diff
+320
-13
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|
|||||||
<link rel="prev" href="../persistent_compact_int_vec/">
|
<link rel="prev" href="../persistent_compact_int_vec/">
|
||||||
|
|
||||||
|
|
||||||
<link rel="next" href="../../architecture/sequences/invariant/">
|
<link rel="next" href="../merge/">
|
||||||
|
|
||||||
|
|
||||||
|
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||||||
|
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|
||||||
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|
||||||
|
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||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Installation
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
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|
||||||
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|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
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||||||
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||||||
|
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||||||
|
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|||||||
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||||||
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|
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|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_2" id="__nav_2_label" tabindex="0">
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
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|
|||||||
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|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_2_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_2">
|
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|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -363,6 +390,34 @@
|
|||||||
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|
||||||
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|
||||||
|
|
||||||
|
|
||||||
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|
||||||
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../theory/evolutionary_distances/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Central-position SNP distance (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
|
|
||||||
@@ -387,10 +442,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3" checked>
|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4" checked>
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_3" id="__nav_3_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_4" id="__nav_4_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -408,8 +463,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="true">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_4_label" aria-expanded="true">
|
||||||
<label class="md-nav__title" for="__nav_3">
|
<label class="md-nav__title" for="__nav_4">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -649,6 +704,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../evidence_elimination/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Evidence elimination (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<li class="md-nav__item">
|
<li class="md-nav__item">
|
||||||
<a href="../obilayeredmap/" class="md-nav__link">
|
<a href="../obilayeredmap/" class="md-nav__link">
|
||||||
|
|
||||||
@@ -1002,6 +1085,146 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../merge/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Merge command
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../merge_parallelism/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Merge parallelism & memory
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../filtering/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Kmer filtering
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../select/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Select command
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../obitaxonomy/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
obitaxonomy crate
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
|
|
||||||
@@ -1024,10 +1247,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4" >
|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_5" >
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_4" id="__nav_4_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_5" id="__nav_5_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -1045,8 +1268,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_4_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_5_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_4">
|
<label class="md-nav__title" for="__nav_5">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -1112,6 +1335,90 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../architecture/siblings/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Sibling annex (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../architecture/numa_worker_pools/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
NUMA-aware worker pools
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../architecture/numa_partition_runner/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
NUMA-aware partition runner
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
|
|
||||||
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+319
-12
@@ -182,6 +182,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../installation/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Installation
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -191,10 +218,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_2" >
|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_3" >
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_2" id="__nav_2_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_3" id="__nav_3_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -212,8 +239,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_2_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_2">
|
<label class="md-nav__title" for="__nav_3">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
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||||||
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||||||
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||||||
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|
|||||||
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||||||
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||||||
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|
||||||
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||||||
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||||||
|
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||||||
|
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|
||||||
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||||||
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||||||
|
Central-position SNP distance (discussion)
|
||||||
|
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||||||
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||||||
|
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||||||
|
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
|||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
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||||||
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||||||
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|
||||||
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|
||||||
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||||||
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|
||||||
|
|
||||||
|
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|
||||||
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||||||
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||||||
|
Evidence elimination (discussion)
|
||||||
|
|
||||||
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||||||
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||||||
|
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||||||
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||||||
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||||||
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|
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|
||||||
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|
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|
||||||
|
|
||||||
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|
|||||||
|
|
||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
|
|
||||||
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||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
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||||||
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||||||
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||||||
|
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|
||||||
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||||||
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||||||
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|
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||||||
|
|
||||||
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||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Merge parallelism & memory
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../filtering/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Kmer filtering
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../select/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Select command
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
obitaxonomy crate
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
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|
||||||
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|
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|
||||||
|
|
||||||
@@ -1007,10 +1230,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4" >
|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_5" >
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_4" id="__nav_4_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_5" id="__nav_5_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -1028,8 +1251,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_4_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_5_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_4">
|
<label class="md-nav__title" for="__nav_5">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -1095,6 +1318,90 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../architecture/siblings/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Sibling annex (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../architecture/numa_worker_pools/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
NUMA-aware worker pools
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../../architecture/numa_partition_runner/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
NUMA-aware partition runner
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</a>
|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
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|
||||||
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|
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|
||||||
|
|
||||||
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Load diff
+381
-23
@@ -182,6 +182,33 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
<a href="../../installation/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Installation
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -191,10 +218,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
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|
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|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_2" id="__nav_2_label" tabindex="0">
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -212,8 +239,8 @@
|
|||||||
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|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_2_label" aria-expanded="false">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="false">
|
||||||
<label class="md-nav__title" for="__nav_2">
|
<label class="md-nav__title" for="__nav_3">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -363,6 +390,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Central-position SNP distance (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
</ul>
|
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|
||||||
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|
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|
||||||
|
|
||||||
@@ -387,10 +442,10 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
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|
<input class="md-nav__toggle md-toggle " type="checkbox" id="__nav_4" checked>
|
||||||
|
|
||||||
|
|
||||||
<label class="md-nav__link" for="__nav_3" id="__nav_3_label" tabindex="0">
|
<label class="md-nav__link" for="__nav_4" id="__nav_4_label" tabindex="0">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@@ -408,8 +463,8 @@
|
|||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
</label>
|
</label>
|
||||||
|
|
||||||
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_3_label" aria-expanded="true">
|
<nav class="md-nav" data-md-level="1" aria-labelledby="__nav_4_label" aria-expanded="true">
|
||||||
<label class="md-nav__title" for="__nav_3">
|
<label class="md-nav__title" for="__nav_4">
|
||||||
<span class="md-nav__icon md-icon"></span>
|
<span class="md-nav__icon md-icon"></span>
|
||||||
|
|
||||||
|
|
||||||
@@ -773,6 +828,34 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../evidence_elimination/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Evidence elimination (discussion)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
</li>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
<li class="md-nav__item">
|
<li class="md-nav__item">
|
||||||
<a href="../obilayeredmap/" class="md-nav__link">
|
<a href="../obilayeredmap/" class="md-nav__link">
|
||||||
|
|
||||||
@@ -851,6 +934,146 @@
|
|||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<li class="md-nav__item">
|
||||||
|
<a href="../merge/" class="md-nav__link">
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
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|
||||||
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|
||||||
|
|
||||||
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||||||
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||||||
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||||||
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|
||||||
|
|
||||||
|
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|
||||||
|
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|
||||||
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||||||
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|
||||||
|
|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
Merge parallelism & memory
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
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||||||
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||||||
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||||||
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|
||||||
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|
||||||
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||||||
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||||||
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||||||
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||||||
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|
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||||||
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||||||
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||||||
|
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|
||||||
|
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|
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||||||
|
|
||||||
|
<span class="md-ellipsis">
|
||||||
|
|
||||||
|
|
||||||
|
Kmer filtering
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
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|
||||||
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|
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|
||||||
|
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||||||
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|
||||||
|
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|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
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|
||||||
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|
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|
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|
||||||
|
|
||||||
|
obitaxonomy crate
|
||||||
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||||||
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||||||
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Sibling annex (discussion)
|
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||||||
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||||||
|
|
||||||
|
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|
||||||
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|
||||||
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||||||
|
NUMA-aware worker pools
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</span>
|
||||||
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|
||||||
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||||||
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|
||||||
|
<span class="md-ellipsis">
|
||||||
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||||||
|
|
||||||
|
NUMA-aware partition runner
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
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|
||||||
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|
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|
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|
||||||
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|
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|
||||||
|
|
||||||
@@ -1104,7 +1411,9 @@
|
|||||||
<li><strong>error valley</strong> → suggests min_count (typically the local minimum between the error peak and the coverage peak)</li>
|
<li><strong>error valley</strong> → suggests min_count (typically the local minimum between the error peak and the coverage peak)</li>
|
||||||
</ul>
|
</ul>
|
||||||
<h2 id="phase-1-scatter">Phase 1 — Scatter</h2>
|
<h2 id="phase-1-scatter">Phase 1 — Scatter</h2>
|
||||||
<p>Single streaming pass over raw input files (FASTA/FASTQ, gzip). FASTQ quality scores are ignored. For each read:</p>
|
<p>Single streaming pass over raw input files (FASTA/FASTQ, gzip). FASTQ quality scores are ignored.</p>
|
||||||
|
<p>Input files are read via <code>open_nuc_stream</code>, which opens and decompresses the file, auto-detects the format (FASTA / FASTQ / GenBank), and yields a sequence of <code>NucPage</code> buffers. Each <code>NucPage</code> is a flat 64 KB buffer of normalised bytes (<code>ACGT</code> + <code>\x00</code> separators), carrying a k−1 byte overlap from the preceding page so that no k-mer is lost at page boundaries. Per-record identity (sequence id, raw bytes) is not preserved; this is intentional — the scatter phase only needs normalised bases to produce superkmers.</p>
|
||||||
|
<p>For each read fragment within a page:</p>
|
||||||
<ol>
|
<ol>
|
||||||
<li><strong>Ambiguous base filter</strong>: cut at any non-ACGT base; discard fragments shorter than k.</li>
|
<li><strong>Ambiguous base filter</strong>: cut at any non-ACGT base; discard fragments shorter than k.</li>
|
||||||
<li><strong>Entropy filter</strong>: scan each fragment with a sliding window of size k. When the kmer <span class="arithmatex">\(K_i = S[i \mathinner{..} i+k-1]\)</span> ended by nucleotide <span class="arithmatex">\(S[j]\)</span> (with <span class="arithmatex">\(j = i+k-1\)</span>) has entropy below threshold <span class="arithmatex">\(\theta\)</span>, emit the current segment and start a new one (see algorithm below). <span class="arithmatex">\(K_i\)</span> belongs to neither segment, and no valid kmer is lost.</li>
|
<li><strong>Entropy filter</strong>: scan each fragment with a sliding window of size k. When the kmer <span class="arithmatex">\(K_i = S[i \mathinner{..} i+k-1]\)</span> ended by nucleotide <span class="arithmatex">\(S[j]\)</span> (with <span class="arithmatex">\(j = i+k-1\)</span>) has entropy below threshold <span class="arithmatex">\(\theta\)</span>, emit the current segment and start a new one (see algorithm below). <span class="arithmatex">\(K_i\)</span> belongs to neither segment, and no valid kmer is lost.</li>
|
||||||
@@ -1154,8 +1463,13 @@ B ≈ 100 is tunable; RAM needed ≈ partition_size / B.</p>
|
|||||||
for each kmer in sequence:
|
for each kmer in sequence:
|
||||||
kmer_counts[canonical(kmer)] += COUNT
|
kmer_counts[canonical(kmer)] += COUNT
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>Implemented as an external sort or a temporary HashMap, depending on partition size. At the end of this phase, each distinct canonical kmer has its exact total count.</p>
|
<p>Implemented as a three-step pipeline in <code>count_partition()</code>:</p>
|
||||||
<p>Abundance filter applied here: kmers with <code>total_count < q</code> are discarded. <code>q</code> is a collection parameter (0 = keep all, including singletons for ≤1x data).</p>
|
<ol>
|
||||||
|
<li><strong>External sort</strong> (<code>kmer_sort::sort_unique_kmers</code>): read dereplicated superkmers, extract canonical kmer raw <code>u64</code> values, sort in RAM-bounded chunks (adaptive: 40% of available RAM ÷ n_threads, min 1 M kmers/chunk), k-way merge with inline dedup → <code>sorted_unique.bin</code>. f0 is now known exactly.</li>
|
||||||
|
<li><strong>Provisional MPHF</strong> (ptr_hash): built from <code>sorted_unique.bin</code> via <code>new_from_par_iter(f0, ...)</code>. Stored to <code>mphf1.bin</code>; <code>sorted_unique.bin</code> deleted immediately.</li>
|
||||||
|
<li><strong>Accumulation pass</strong>: re-read dereplicated superkmers; for each kmer, <code>slot = mphf.index(kmer.raw())</code>, increment <code>counts1[slot]</code> by the superkmer COUNT. Stored in a <code>PersistentCompactIntVec</code> (<code>counts1.bin</code>).</li>
|
||||||
|
</ol>
|
||||||
|
<p>At the end of this phase, each distinct canonical kmer has its exact total count, and the frequency spectrum (<code>spectrums/{label}.json</code>) is written to the index root.</p>
|
||||||
<p>No pre-filter on super-kmer COUNT is possible at phase 2: a super-kmer with COUNT=1 may contain only high-abundance kmers, each present in many other super-kmers across the partition.</p>
|
<p>No pre-filter on super-kmer COUNT is possible at phase 2: a super-kmer with COUNT=1 may contain only high-abundance kmers, each present in many other super-kmers across the partition.</p>
|
||||||
<h2 id="phase-4-super-kmer-compaction">Phase 4 — Super-kmer compaction</h2>
|
<h2 id="phase-4-super-kmer-compaction">Phase 4 — Super-kmer compaction</h2>
|
||||||
<p>The valid kmer set from phase 3 is used as a mask to rewrite the super-kmer files:</p>
|
<p>The valid kmer set from phase 3 is used as a mask to rewrite the super-kmer files:</p>
|
||||||
@@ -1188,14 +1502,52 @@ branching / dead-end → unitig start or end
|
|||||||
<p>Output: <code>unitigs.bin</code> — the permanent evidence structure for the partition. Each kmer in the partition appears at exactly one (unitig_id, offset) location.</p>
|
<p>Output: <code>unitigs.bin</code> — the permanent evidence structure for the partition. Each kmer in the partition appears at exactly one (unitig_id, offset) location.</p>
|
||||||
<p><strong>Scope of local unitigs:</strong> these are unitigs of the partition's local de Bruijn graph, not global unitigs. A kmer whose k-1 successor or predecessor falls in another partition appears as a dead end locally and terminates the unitig. This does not affect correctness of verification but means partition-local unitigs cannot be directly reused for global assembly.</p>
|
<p><strong>Scope of local unitigs:</strong> these are unitigs of the partition's local de Bruijn graph, not global unitigs. A kmer whose k-1 successor or predecessor falls in another partition appears as a dead end locally and terminates the unitig. This does not affect correctness of verification but means partition-local unitigs cannot be directly reused for global assembly.</p>
|
||||||
<h2 id="phase-6-mphf-construction-and-index-finalisation">Phase 6 — MPHF construction and index finalisation</h2>
|
<h2 id="phase-6-mphf-construction-and-index-finalisation">Phase 6 — MPHF construction and index finalisation</h2>
|
||||||
<p>Built once on the definitive kmer set (all kmers in all unitigs of the partition). See <a href="../obilayeredmap/">obilayeredmap</a> and <a href="../mphf/">MPHF selection</a> for the current implementation.</p>
|
<p><code>build_index_layer</code> is called per partition (in parallel via <code>build_layers</code>) with the following parameters sourced from <code>IndexConfig</code>:</p>
|
||||||
<div class="highlight"><pre><span></span><code>kmers from unitigs → MPHF → mphf.bin
|
<ul>
|
||||||
→ evidence.bin : n × u32, each = (chunk_id: 25 bits | rank: 7 bits)
|
<li><code>block_bits</code> — from <code>IndexConfig::block_bits</code>; controls the <code>.idx</code> block size (2^block_bits unitig chunks per block) for exact evidence</li>
|
||||||
→ payload : counts/ (mode 2) or presence/ (mode 3)
|
<li><code>evidence</code> — <code>EvidenceKind::Exact</code> or <code>EvidenceKind::Approx { b, z }</code>; propagated unchanged from <code>IndexConfig::evidence</code></li>
|
||||||
|
<li><code>min_ab</code> / <code>max_ab</code> — abundance bounds applied before graph construction</li>
|
||||||
|
<li><code>with_counts</code> — whether to store kmer counts alongside set membership</li>
|
||||||
|
</ul>
|
||||||
|
<p><strong>Abundance filtering:</strong> when <code>min_ab > 1</code> or <code>max_ab.is_some()</code>, the provisional <code>mphf1.bin</code> and <code>counts1.bin</code> produced in phase 3 are memory-mapped. Each canonical kmer is accepted only if its count in <code>counts1</code> satisfies the bounds. If either file is absent, filtering is skipped (all kmers accepted).</p>
|
||||||
|
<div class="highlight"><pre><span></span><code>for each kmer in dereplicated super-kmer:
|
||||||
|
ab = counts1[mphf1.index(kmer.raw())]
|
||||||
|
if ab < min_ab || ab > max_ab: skip
|
||||||
|
graph.push(kmer)
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>The MPHF is built in two passes over <code>unitigs.bin</code>: parallel pass for <code>mphf.bin</code>, sequential pass for <code>evidence.bin</code> and payload. The exact kmer count is available from the unitig index (<code>unitigs.bin.idx</code>) before the passes begin.</p>
|
<p><strong>Graph build and unitig write:</strong></p>
|
||||||
<p><strong>Exact verification via unitig evidence:</strong></p>
|
<p>The surviving kmers are fed into <code>GraphDeBruijn</code>, which computes degrees and yields unitigs. Unitigs are written to <code>layer_0/unitigs.bin</code> via a <code>UnitigFileWriter</code>.</p>
|
||||||
<p><code>unitigs.bin</code> serves as the evidence structure. The MPHF maps every input to <code>[0, N)</code> including absent kmers — the unitig read-back (via <code>evidence.bin</code>) is the only correct membership test.</p>
|
<p><strong>MPHF and evidence build:</strong></p>
|
||||||
|
<p><code>Layer::build</code> (membership-only) or <code>Layer::<PersistentCompactIntMatrix>::build</code> (with counts) is called next. Internally, <code>MphfLayer::build</code> performs two passes:</p>
|
||||||
|
<ol>
|
||||||
|
<li><strong>Pass 1 (parallel):</strong> build <code>unitigs.bin.idx</code> (block size = 2^<code>block_bits</code>) then construct the MPHF from all canonical kmers in <code>unitigs.bin</code>; store to <code>mphf.bin</code>.</li>
|
||||||
|
<li><strong>Pass 2 (sequential):</strong> for each kmer in <code>unitigs.bin</code>, compute its slot and write <code>evidence.bin</code> (<code>chunk_id: 25 bits | rank: 7 bits</code> packed into a <code>u32</code>); also invoke the payload callback (<code>fill_slot</code>) to populate <code>counts/</code> if <code>with_counts</code>.</li>
|
||||||
|
</ol>
|
||||||
|
<p>After <code>Layer::build</code> completes, <code>layer_meta.json</code> records <code>EvidenceKind::Exact</code>.</p>
|
||||||
|
<p><strong>Approximate evidence override:</strong></p>
|
||||||
|
<p>If <code>evidence</code> is <code>EvidenceKind::Approx { b, z }</code>, <code>build_approx_evidence</code> is called immediately after <code>Layer::build</code>. It overwrites the exact evidence bundle with <code>fingerprint.bin</code> (b-bit hash per slot) and rewrites <code>layer_meta.json</code> with <code>EvidenceKind::Approx { b, z }</code>. No <code>.idx</code> file is needed at query time in this mode.</p>
|
||||||
|
<div class="highlight"><pre><span></span><code>// Exact path → evidence.bin + unitigs.bin.idx + layer_meta.json(Exact)
|
||||||
|
// Approx path → fingerprint.bin + layer_meta.json(Approx{b,z})
|
||||||
|
// (evidence.bin left on disk but not used)
|
||||||
|
</code></pre></div>
|
||||||
|
<p><strong>Partition metadata:</strong></p>
|
||||||
|
<p>After all layer files are written, <code>PartitionMeta { n_layers: 1 }</code> is serialised to <code>index/meta.json</code> inside the partition directory. This file is required by <code>LayeredMap::open</code> for subsequent merge operations.</p>
|
||||||
|
<p><strong>File layout per partition after phase 6:</strong></p>
|
||||||
|
<div class="highlight"><pre><span></span><code>part_XXXXX/
|
||||||
|
index/
|
||||||
|
meta.json ← PartitionMeta { n_layers: 1 }
|
||||||
|
layer_0/
|
||||||
|
unitigs.bin ← permanent evidence (all modes)
|
||||||
|
unitigs.bin.idx ← block index (exact mode only)
|
||||||
|
mphf.bin ← MPHF
|
||||||
|
evidence.bin ← exact evidence (exact mode)
|
||||||
|
fingerprint.bin ← b-bit fingerprints (approx mode)
|
||||||
|
layer_meta.json ← EvidenceKind tag
|
||||||
|
counts/ ← PersistentCompactIntMatrix (with_counts only)
|
||||||
|
</code></pre></div>
|
||||||
|
<p><strong>Cleanup:</strong> unless <code>--keep-intermediate</code> is set, <code>remove_build_artifacts</code> deletes <code>dereplicated.skmer.zst</code>, <code>mphf1.bin</code>, and <code>counts1.bin</code> after all partitions are indexed.</p>
|
||||||
|
<p>See <a href="../obilayeredmap/">obilayeredmap</a> and <a href="../mphf/">MPHF selection</a> for data structure details.</p>
|
||||||
|
<p><strong>Query path (exact evidence):</strong></p>
|
||||||
<div class="highlight"><pre><span></span><code>query kmer q
|
<div class="highlight"><pre><span></span><code>query kmer q
|
||||||
→ canonical_minimizer(q) → hash → PART → part_XXXXX/
|
→ canonical_minimizer(q) → hash → PART → part_XXXXX/
|
||||||
→ MPHF(q) → slot s
|
→ MPHF(q) → slot s
|
||||||
@@ -1204,7 +1556,13 @@ branching / dead-end → unitig start or end
|
|||||||
→ match : return payload[s] ← exact hit
|
→ match : return payload[s] ← exact hit
|
||||||
→ no match: kmer absent ← MPHF collision on absent kmer
|
→ no match: kmer absent ← MPHF collision on absent kmer
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p><code>superkmers.bin.gz</code> is no longer needed at this point and can be deleted.</p>
|
<p><strong>Query path (approximate evidence):</strong></p>
|
||||||
|
<div class="highlight"><pre><span></span><code>query kmer q
|
||||||
|
→ MPHF(q) → slot s
|
||||||
|
→ fingerprint[s] matches seq_hash(q)?
|
||||||
|
→ yes : probable hit (FP rate = 1/2^b per kmer, 1/2^(b·z) per z-window)
|
||||||
|
→ no : kmer absent
|
||||||
|
</code></pre></div>
|
||||||
<div class="footnote">
|
<div class="footnote">
|
||||||
<hr />
|
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|
||||||
<ol>
|
<ol>
|
||||||
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+361
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|
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||||||
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||||||
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||||||
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|
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|
||||||
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||||||
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|
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|
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Kmer filtering
|
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obitaxonomy crate
|
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|
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|
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|
||||||
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|
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|
||||||
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|
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|
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|
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|
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|
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||||||
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||||||
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|
||||||
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|
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|
|
||||||
|
|
||||||
|
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|
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||||||
@@ -1046,61 +1353,49 @@
|
|||||||
|
|
||||||
<h1 id="superkmer-implementation">SuperKmer — implementation</h1>
|
<h1 id="superkmer-implementation">SuperKmer — implementation</h1>
|
||||||
<h2 id="memory-layout">Memory layout</h2>
|
<h2 id="memory-layout">Memory layout</h2>
|
||||||
<p>A super-kmer is stored as a <strong>32-bit header</strong> followed by a <strong>byte-aligned nucleotide sequence</strong> (2 bits/base, nucleotide 0 at the MSB of the first byte):</p>
|
<p><code>SuperKmer</code> holds two separate fields:</p>
|
||||||
|
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">struct</span><span class="w"> </span><span class="nc">SuperKmer</span><span class="w"> </span><span class="p">{</span>
|
||||||
|
<span class="w"> </span><span class="k">pub</span><span class="p">(</span><span class="k">crate</span><span class="p">)</span><span class="w"> </span><span class="n">count</span><span class="p">:</span><span class="w"> </span><span class="kt">u32</span><span class="p">,</span>
|
||||||
|
<span class="w"> </span><span class="k">pub</span><span class="p">(</span><span class="k">crate</span><span class="p">)</span><span class="w"> </span><span class="n">inner</span><span class="p">:</span><span class="w"> </span><span class="nc">PackedSeq</span><span class="p">,</span>
|
||||||
|
<span class="p">}</span>
|
||||||
|
</code></pre></div>
|
||||||
|
<p><code>PackedSeq</code> stores a 2-bit packed DNA sequence as a heap-allocated <code>Box<[u8]></code> plus a <code>tail: u8</code> field:</p>
|
||||||
<table>
|
<table>
|
||||||
<thead>
|
<thead>
|
||||||
<tr>
|
<tr>
|
||||||
<th>Field</th>
|
<th>Field</th>
|
||||||
<th>Bits</th>
|
<th>Type</th>
|
||||||
<th>Role</th>
|
<th>Role</th>
|
||||||
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|
</tr>
|
||||||
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|
</thead>
|
||||||
<tbody>
|
<tbody>
|
||||||
<tr>
|
<tr>
|
||||||
<td>COUNT</td>
|
<td><code>tail</code></td>
|
||||||
<td>24</td>
|
<td><code>u8</code></td>
|
||||||
<td>Occurrence count (≤ 16 M)</td>
|
<td>Number of valid nucleotides in the last byte: 0 encodes 4, 1–3 are identity</td>
|
||||||
</tr>
|
</tr>
|
||||||
<tr>
|
<tr>
|
||||||
<td>NKMERS</td>
|
<td><code>seq</code></td>
|
||||||
<td>8</td>
|
<td><code>Box<[u8]></code></td>
|
||||||
<td>Number of kmers (= seq_length − k + 1, range 1–255)</td>
|
<td>2-bit packed bytes, nucleotide 0 at bits 7–6 of <code>seq[0]</code></td>
|
||||||
</tr>
|
</tr>
|
||||||
</tbody>
|
</tbody>
|
||||||
</table>
|
</table>
|
||||||
<p>Bit layout (MSB to LSB): <code>[31:8] COUNT [7:0] NKMERS</code></p>
|
<p>Nucleotide length is recovered without storing it explicitly:</p>
|
||||||
<p>NKMERS is stored as a raw <code>u8</code> in <strong>kmer units</strong>, not nucleotides. The nucleotide length is recovered as <code>NKMERS + k − 1</code>. This avoids the awkward wrapping convention (<code>0 = 256</code>) that would be needed if nucleotide length were stored directly, and gains k−1 = 30 units of headroom:</p>
|
<div class="highlight"><pre><span></span><code>seql = (seq.len() - 1) * 4 + tail_count(tail)
|
||||||
<table>
|
</code></pre></div>
|
||||||
<thead>
|
<p>There is no packed header word — <code>count</code> and the sequence live in separate fields.</p>
|
||||||
<tr>
|
<p>The on-disk binary format (produced by <code>write_to_binary</code>) is:</p>
|
||||||
<th>unit</th>
|
<div class="highlight"><pre><span></span><code>[varint(count)] [u8: seql − k] [packed bytes…]
|
||||||
<th>u8 covers</th>
|
</code></pre></div>
|
||||||
<th>max nucleotides</th>
|
<p><code>seql − k</code> fits in a <code>u8</code> when <code>n_kmers = seql − k + 1 ≤ MAX_KMERS_PER_CHUNK (= 256)</code>. If a super-kmer exceeds 256 kmers, <code>write_to_binary</code> splits it into overlapping chunks (k−1 nucleotide overlap, same count per chunk), each a self-contained record readable by <code>read_from_binary</code>.</p>
|
||||||
</tr>
|
<p>The public accessors operate on the struct fields directly:</p>
|
||||||
</thead>
|
<div class="highlight"><pre><span></span><code><span class="k">fn</span><span class="w"> </span><span class="nf">seql</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="kt">usize</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">inner</span><span class="p">.</span><span class="n">seql</span><span class="p">()</span><span class="w"> </span><span class="p">}</span>
|
||||||
<tbody>
|
<span class="k">fn</span><span class="w"> </span><span class="nf">count</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="kt">u32</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">count</span><span class="w"> </span><span class="p">}</span>
|
||||||
<tr>
|
<span class="k">fn</span><span class="w"> </span><span class="nf">increment</span><span class="p">(</span><span class="o">&</span><span class="k">mut</span><span class="w"> </span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">count</span><span class="w"> </span><span class="o">+=</span><span class="w"> </span><span class="mi">1</span><span class="p">;</span><span class="w"> </span><span class="p">}</span>
|
||||||
<td>nucleotides</td>
|
<span class="k">fn</span><span class="w"> </span><span class="nf">add</span><span class="p">(</span><span class="o">&</span><span class="k">mut</span><span class="w"> </span><span class="bp">self</span><span class="p">,</span><span class="w"> </span><span class="n">n</span><span class="p">:</span><span class="w"> </span><span class="kt">u32</span><span class="p">)</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">count</span><span class="w"> </span><span class="o">+=</span><span class="w"> </span><span class="n">n</span><span class="p">;</span><span class="w"> </span><span class="p">}</span>
|
||||||
<td>255 nt</td>
|
<span class="k">fn</span><span class="w"> </span><span class="nf">set_count</span><span class="p">(</span><span class="o">&</span><span class="k">mut</span><span class="w"> </span><span class="bp">self</span><span class="p">,</span><span class="w"> </span><span class="n">n</span><span class="p">:</span><span class="w"> </span><span class="kt">u32</span><span class="p">)</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">count</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">n</span><span class="p">;</span><span class="w"> </span><span class="p">}</span>
|
||||||
<td>225 kmers</td>
|
|
||||||
</tr>
|
|
||||||
<tr>
|
|
||||||
<td><strong>kmers</strong></td>
|
|
||||||
<td><strong>255 kmers</strong></td>
|
|
||||||
<td><strong>285 nt</strong></td>
|
|
||||||
</tr>
|
|
||||||
</tbody>
|
|
||||||
</table>
|
|
||||||
<p>The public accessors:</p>
|
|
||||||
<div class="highlight"><pre><span></span><code><span class="k">fn</span><span class="w"> </span><span class="nf">n_kmers</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="kt">usize</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="p">(</span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0xFF</span><span class="p">)</span><span class="w"> </span><span class="k">as</span><span class="w"> </span><span class="kt">usize</span><span class="w"> </span><span class="p">}</span>
|
|
||||||
<span class="k">fn</span><span class="w"> </span><span class="nf">seql</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="kt">usize</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">n_kmers</span><span class="p">()</span><span class="w"> </span><span class="o">+</span><span class="w"> </span><span class="n">K</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">1</span><span class="w"> </span><span class="p">}</span>
|
|
||||||
<span class="k">fn</span><span class="w"> </span><span class="nf">count</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="kt">u32</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">8</span><span class="w"> </span><span class="p">}</span>
|
|
||||||
<span class="k">fn</span><span class="w"> </span><span class="nf">increment</span><span class="p">(</span><span class="o">&</span><span class="k">mut</span><span class="w"> </span><span class="bp">self</span><span class="p">)</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o">+=</span><span class="w"> </span><span class="mi">1</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">8</span><span class="p">;</span><span class="w"> </span><span class="p">}</span>
|
|
||||||
<span class="k">fn</span><span class="w"> </span><span class="nf">add</span><span class="p">(</span><span class="o">&</span><span class="k">mut</span><span class="w"> </span><span class="bp">self</span><span class="p">,</span><span class="w"> </span><span class="n">n</span><span class="p">:</span><span class="w"> </span><span class="kt">u32</span><span class="p">)</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o">+=</span><span class="w"> </span><span class="n">n</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">8</span><span class="p">;</span><span class="w"> </span><span class="p">}</span>
|
|
||||||
<span class="k">fn</span><span class="w"> </span><span class="nf">set_count</span><span class="p">(</span><span class="o">&</span><span class="k">mut</span><span class="w"> </span><span class="bp">self</span><span class="p">,</span><span class="w"> </span><span class="n">n</span><span class="p">:</span><span class="w"> </span><span class="kt">u32</span><span class="p">)</span><span class="w"> </span><span class="p">{</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="p">(</span><span class="bp">self</span><span class="p">.</span><span class="mi">0</span><span class="w"> </span><span class="o">&</span><span class="w"> </span><span class="mh">0xFF</span><span class="p">)</span><span class="w"> </span><span class="o">|</span><span class="w"> </span><span class="p">(</span><span class="n">n</span><span class="w"> </span><span class="o"><<</span><span class="w"> </span><span class="mi">8</span><span class="p">);</span><span class="w"> </span><span class="p">}</span>
|
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>In practice, observed super-kmer lengths on metagenomic data (k=31) are below 55 nucleotides (≤ 25 kmers) — far from the 255-kmer cap. If a super-kmer ever exceeds 255 kmers, it is split with a k−1 nucleotide overlap, preserving all kmers without duplication (identical mechanism to partition-boundary splits).</p>
|
|
||||||
<p>The sequence is always stored in canonical form (lexicographic minimum of forward and reverse complement), with nucleotide 0 at the MSB of the first byte. The byte array can be hashed directly without any adjustment.</p>
|
|
||||||
<h2 id="ascii-encoding-and-decoding">ASCII encoding and decoding</h2>
|
<h2 id="ascii-encoding-and-decoding">ASCII encoding and decoding</h2>
|
||||||
<p>Two lookup tables handle ASCII ↔ 2-bit conversion:</p>
|
<p>Two lookup tables handle ASCII ↔ 2-bit conversion:</p>
|
||||||
<ul>
|
<ul>
|
||||||
@@ -1125,7 +1420,7 @@
|
|||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p><code>REVCOMP4</code> is 256 bytes (fits in L1 cache), computed at compile time. No endianness dependency — all operations are pure arithmetic on byte values.</p>
|
<p><code>REVCOMP4</code> is 256 bytes (fits in L1 cache), computed at compile time. No endianness dependency — all operations are pure arithmetic on byte values.</p>
|
||||||
<p><strong>Step 2 — realignment.</strong> After step 1, <code>padding = n × 8 − seql × 2</code> spurious bits (complements of the original padding A's) appear at the start of the array. They are flushed left using <code>BitSlice<u8, Msb0>::rotate_left(padding)</code> from the <code>bitvec</code> crate, which is SIMD-accelerated. The trailing <code>padding</code> bits are then zeroed:</p>
|
<p><strong>Step 2 — realignment.</strong> After step 1, <code>padding = n × 8 − seql × 2</code> spurious bits (complements of the original padding A's) appear at the start of the array. They are flushed left using <code>BitSlice<u8, Msb0>::rotate_left(padding)</code> from the <code>bitvec</code> crate, which is SIMD-accelerated. The trailing <code>padding</code> bits are then zeroed:</p>
|
||||||
<div class="highlight"><pre><span></span><code><span class="kd">let</span><span class="w"> </span><span class="n">seql</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">n_kmers</span><span class="p">()</span><span class="w"> </span><span class="o">+</span><span class="w"> </span><span class="n">k</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="mi">1</span><span class="p">;</span>
|
<div class="highlight"><pre><span></span><code><span class="kd">let</span><span class="w"> </span><span class="n">seql</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="bp">self</span><span class="p">.</span><span class="n">seql</span><span class="p">();</span>
|
||||||
<span class="n">shift</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">n</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="mi">8</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="n">seql</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="mi">2</span><span class="w"> </span><span class="c1">// number of padding bits</span>
|
<span class="n">shift</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">n</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="mi">8</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="n">seql</span><span class="w"> </span><span class="o">*</span><span class="w"> </span><span class="mi">2</span><span class="w"> </span><span class="c1">// number of padding bits</span>
|
||||||
<span class="n">bits</span><span class="p">.</span><span class="n">rotate_left</span><span class="p">(</span><span class="n">shift</span><span class="p">)</span>
|
<span class="n">bits</span><span class="p">.</span><span class="n">rotate_left</span><span class="p">(</span><span class="n">shift</span><span class="p">)</span>
|
||||||
<span class="n">bits</span><span class="p">[</span><span class="n">len</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="n">shift</span><span class="o">..</span><span class="p">].</span><span class="n">fill</span><span class="p">(</span><span class="kc">false</span><span class="p">)</span>
|
<span class="n">bits</span><span class="p">[</span><span class="n">len</span><span class="w"> </span><span class="o">-</span><span class="w"> </span><span class="n">shift</span><span class="o">..</span><span class="p">].</span><span class="n">fill</span><span class="p">(</span><span class="kc">false</span><span class="p">)</span>
|
||||||
@@ -1143,7 +1438,7 @@
|
|||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
</div>
|
</div>
|
||||||
<h2 id="minimizer-sliding-window">Minimizer sliding window</h2>
|
<h2 id="minimizer-sliding-window">Minimizer sliding window</h2>
|
||||||
<p>Super-kmers are built by <code>SuperKmerIter</code> (crate <code>obiskbuilder</code>), which maintains the current minimizer with a <strong>monotonic deque</strong> over a sliding window of W = k − m + 1 m-mer positions.</p>
|
<p>Super-kmers are built by <code>SuperKmerIter</code> (crate <code>obiskbuilder</code>), which tracks the current minimizer with a <strong>monotonic deque</strong> (<code>Ring<MmerItem, 32></code>) inside <code>RollingStat</code>, a rolling-window entropy and minimizer tracker.</p>
|
||||||
<p>Each deque entry stores:</p>
|
<p>Each deque entry stores:</p>
|
||||||
<table>
|
<table>
|
||||||
<thead>
|
<thead>
|
||||||
@@ -1167,20 +1462,11 @@
|
|||||||
<tr>
|
<tr>
|
||||||
<td><code>hash</code></td>
|
<td><code>hash</code></td>
|
||||||
<td>u64</td>
|
<td>u64</td>
|
||||||
<td><span class="arithmatex">\(H(\text{canonical})\)</span> — ordering key for random minimizer selection</td>
|
<td><code>hash_kmer(canonical << (64 − 2m))</code> — ordering key for random minimizer selection</td>
|
||||||
</tr>
|
</tr>
|
||||||
</tbody>
|
</tbody>
|
||||||
</table>
|
</table>
|
||||||
<p>The hash <span class="arithmatex">\(H\)</span> is the seeded splitmix64 finalizer (see <a href="../../theory/minimizer/">Minimizer selection</a>):</p>
|
<p>The hash uses the seeded splitmix64 finalizer (<code>mix64(raw ^ 0x9e3779b97f4a7c15)</code>), the same function as <code>kmer::hash_kmer</code>.</p>
|
||||||
<div class="highlight"><pre><span></span><code><span class="k">fn</span><span class="w"> </span><span class="nf">hash_mmer</span><span class="p">(</span><span class="n">canonical</span><span class="p">:</span><span class="w"> </span><span class="kt">u64</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="kt">u64</span><span class="w"> </span><span class="p">{</span>
|
|
||||||
<span class="w"> </span><span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">canonical</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="mh">0x9e3779b97f4a7c15</span><span class="p">;</span><span class="w"> </span><span class="c1">// seed: eliminates fixed point at 0</span>
|
|
||||||
<span class="w"> </span><span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="p">(</span><span class="n">x</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">30</span><span class="p">);</span>
|
|
||||||
<span class="w"> </span><span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">x</span><span class="p">.</span><span class="n">wrapping_mul</span><span class="p">(</span><span class="mh">0xbf58476d1ce4e5b9</span><span class="p">);</span>
|
|
||||||
<span class="w"> </span><span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="p">(</span><span class="n">x</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">27</span><span class="p">);</span>
|
|
||||||
<span class="w"> </span><span class="kd">let</span><span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">=</span><span class="w"> </span><span class="n">x</span><span class="p">.</span><span class="n">wrapping_mul</span><span class="p">(</span><span class="mh">0x94d049bb133111eb</span><span class="p">);</span>
|
|
||||||
<span class="w"> </span><span class="n">x</span><span class="w"> </span><span class="o">^</span><span class="w"> </span><span class="p">(</span><span class="n">x</span><span class="w"> </span><span class="o">>></span><span class="w"> </span><span class="mi">31</span><span class="p">)</span>
|
|
||||||
<span class="p">}</span>
|
|
||||||
</code></pre></div>
|
|
||||||
<p>On each new nucleotide, once the window is full, the deque is updated:</p>
|
<p>On each new nucleotide, once the window is full, the deque is updated:</p>
|
||||||
<div class="admonition abstract">
|
<div class="admonition abstract">
|
||||||
<p class="admonition-title">Algorithm — minimizer deque update</p>
|
<p class="admonition-title">Algorithm — minimizer deque update</p>
|
||||||
@@ -1196,17 +1482,21 @@
|
|||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
</div>
|
</div>
|
||||||
<p>The front of the deque is always the current minimizer. Because the deque is maintained in strictly increasing hash order, each entry is popped at most once — O(1) amortized per nucleotide.</p>
|
<p>The front of the deque is always the current minimizer. Because the deque is maintained in strictly increasing hash order, each entry is popped at most once — O(1) amortized per nucleotide.</p>
|
||||||
<p>A super-kmer boundary is emitted when the minimizer changes: <code>deque.front.hash ≠ prev_hash</code>. The <code>canonical</code> field of the front entry is <strong>not</strong> used for boundary detection — that uses the hash alone. The canonical value is stored so that the partition key <span class="arithmatex">\(H(\text{canonical})\)</span> can be recomputed independently at routing time from the stored <code>minimizer_pos</code>, without inheriting the minimum-order-statistic bias (see <a href="../../theory/minimizer/#partition-key-independence">Minimizer selection — partition key independence</a>).</p>
|
<p>A super-kmer boundary is emitted when the minimizer changes: <code>current_minimizer != prev_minimizer</code>. <code>SuperKmerIter</code> also emits a boundary when:</p>
|
||||||
|
<ul>
|
||||||
|
<li>entropy of the current k-mer falls at or below the threshold θ (cursor retreated by k−1)</li>
|
||||||
|
<li>super-kmer length reaches 256 nucleotides (cursor retreated by k)</li>
|
||||||
|
</ul>
|
||||||
<h2 id="kmer-extraction">Kmer extraction</h2>
|
<h2 id="kmer-extraction">Kmer extraction</h2>
|
||||||
<p>A k-mer is extracted from a super-kmer with <code>SuperKmer::kmer(i, k)</code>, which returns a <code>Kmer</code> — a left-aligned <code>u64</code> newtype (see <a href="../kmer/">Kmer implementation</a>):</p>
|
<p>A k-mer is extracted from a super-kmer with <code>SuperKmer::kmer(i)</code>, which delegates to <code>PackedSeq::extract::<KLen>(i)</code> and returns a <code>Kmer</code> — a left-aligned <code>u64</code> newtype (see <a href="../kmer/">Kmer implementation</a>):</p>
|
||||||
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">kmer</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">,</span><span class="w"> </span><span class="n">i</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">,</span><span class="w"> </span><span class="n">k</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nb">Result</span><span class="o"><</span><span class="n">Kmer</span><span class="p">,</span><span class="w"> </span><span class="n">KmerError</span><span class="o">></span>
|
<div class="highlight"><pre><span></span><code><span class="k">pub</span><span class="w"> </span><span class="k">fn</span><span class="w"> </span><span class="nf">kmer</span><span class="p">(</span><span class="o">&</span><span class="bp">self</span><span class="p">,</span><span class="w"> </span><span class="n">i</span><span class="p">:</span><span class="w"> </span><span class="kt">usize</span><span class="p">)</span><span class="w"> </span><span class="p">-></span><span class="w"> </span><span class="nb">Result</span><span class="o"><</span><span class="n">Kmer</span><span class="p">,</span><span class="w"> </span><span class="n">KmerError</span><span class="o">></span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
<p>The bit slice <code>seq[i*2 .. (i+k)*2]</code> (Msb0 order) is loaded as a big-endian <code>u64</code> via <code>bitvec::load_be</code>, then left-shifted to produce the canonical left-aligned layout. One call — no loop, no allocation.</p>
|
<p>The bit slice <code>seq[i*2 .. (i+k)*2]</code> (Msb0 order) is loaded as a <code>u64</code> via <code>bitvec::load_be</code>, then left-shifted to produce the canonical left-aligned layout. One call — no loop, no allocation.</p>
|
||||||
<hr />
|
<hr />
|
||||||
<div class="admonition abstract">
|
<div class="admonition abstract">
|
||||||
<p class="admonition-title">Algorithm — Super-kmer reverse complement</p>
|
<p class="admonition-title">Algorithm — Super-kmer reverse complement</p>
|
||||||
<div class="highlight"><pre><span></span><code>procedure SuperKmerRevcomp(seq, SEQL):
|
<div class="highlight"><pre><span></span><code>procedure SuperKmerRevcomp(seq, SEQL):
|
||||||
seql ← NKMERS + k − 1 -- nucleotide length
|
seql ← nucleotide length
|
||||||
n ← ⌈seql / 4⌉ -- number of bytes
|
n ← ⌈seql / 4⌉ -- number of bytes
|
||||||
shift ← n × 8 − seql × 2 -- padding bits to flush
|
shift ← n × 8 − seql × 2 -- padding bits to flush
|
||||||
|
|
||||||
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
+1569
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
File diff suppressed because it is too large.
Load diff
@@ -9,7 +9,7 @@
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<h2 id="kmers">Kmers</h2>
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<h2 id="kmers">Kmers</h2>
|
||||||
<p>A <strong>kmer</strong> is a DNA subsequence of fixed length k. Two constraints govern the choice of k:</p>
|
<p>A <strong>kmer</strong> is a DNA subsequence of fixed length k. Two constraints govern the choice of k:</p>
|
||||||
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|
||||||
<li><strong>k ∈ [11, 31]</strong>: the range ensures the kmer is long enough to be specific and short enough to fit in a single machine word.</li>
|
<li><strong>k ∈ [11, 31]</strong>: the range ensures the kmer is long enough to be specific and short enough to fit in a single machine word (u64 at 2 bits/base requires k ≤ 32; k < 11 yields insufficient specificity).</li>
|
||||||
<li><strong>k is odd</strong>: an odd-length sequence cannot equal its own reverse complement (no palindromes). This guarantees that the canonical form <code>min(kmer, revcomp(kmer))</code> is always strictly defined — the two orientations are always distinct — which is required for strand-independent counting.</li>
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<li><strong>k is odd</strong>: an odd-length sequence cannot equal its own reverse complement (no palindromes). This guarantees that the canonical form <code>min(kmer, revcomp(kmer))</code> is always strictly defined — the two orientations are always distinct — which is required for strand-independent counting.</li>
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</ul>
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</ul>
|
||||||
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<p>Both constraints are <strong>enforced at CLI entry</strong> by <code>CommonArgs::validate()</code> in <code>superkmer</code> and <code>index</code>. Passing an invalid k exits immediately with an error message.</p>
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<h2 id="super-kmers">Super-kmers</h2>
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<h2 id="super-kmers">Super-kmers</h2>
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||||||
<p>A <strong>super-kmer</strong> is a maximal run of consecutive kmers from a DNA read, each overlapping the next by k−1 nucleotides. Each kmer of the run carries the same <strong>canonical minimizer</strong>. The <strong>canonical minimizer</strong> of a kmer is the smallest value of <code>min(m-mer, revcomp(m-mer))</code> over all m-mers within the kmer (m < k, m odd), with the constraint that <strong>non-degenerate m-mers are always preferred</strong> over degenerate ones. A degenerate m-mer is one composed of a single repeated nucleotide (all-A, all-C, all-G, or all-T); such m-mers are selected only if no non-degenerate candidate exists in the window.</p>
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<p>A <strong>super-kmer</strong> is a maximal run of consecutive kmers from a DNA read, each overlapping the next by k−1 nucleotides, sharing the same <strong>canonical minimizer</strong>. The <strong>canonical minimizer</strong> of a kmer is the m-mer (m < k) whose canonical hash <code>hash_kmer(min(m-mer, revcomp(m-mer)))</code> is smallest over all m-mers in the kmer window. The hash function is a <code>mix64</code>-based bijection; selection is purely hash-ordered with no degeneracy filter. A super-kmer is capped at 256 nucleotides; a longer run is split at that boundary.</p>
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||||||
<h3 id="canonical-super-kmers">Canonical super-kmers</h3>
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<h3 id="canonical-super-kmers">Canonical super-kmers</h3>
|
||||||
<p>A <strong>canonical super-kmer</strong> is the lexicographic minimum of a super-kmer and its reverse complement:</p>
|
<p>A <strong>canonical super-kmer</strong> is the lexicographic minimum of a super-kmer and its reverse complement:</p>
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||||||
<div class="highlight"><pre><span></span><code>canonical(super-kmer) = min(super-kmer, revcomp(super-kmer))
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<div class="highlight"><pre><span></span><code>canonical(super-kmer) = min(super-kmer, revcomp(super-kmer))
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