Celine Mercier
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1a2d552567
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Abandoned beginning of functions to apply comparisons to whole columns
(not worth it for now as comparisons are already fast enough)
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2016-05-04 13:39:55 +02:00 |
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Celine Mercier
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bc12360490
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Reworked and commented a bit the cython layer for dms, columns and views
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2016-05-02 15:16:06 +02:00 |
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Celine Mercier
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872071b104
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Removed a list of column pointers kept in the OBIView class that was not
really needed
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2016-05-02 14:23:42 +02:00 |
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Celine Mercier
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32cc8968e8
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Adding CeCILL license
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2016-05-02 11:51:59 +02:00 |
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Celine Mercier
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d6481f0db8
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2016-04-29 17:46:59 +02:00 |
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Celine Mercier
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a32920e401
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Relative paths when creating or opening a DMS now work
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2016-04-29 17:46:36 +02:00 |
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Celine Mercier
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31cf27d676
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Added indexer function that returns the name of the indexer
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2016-04-29 16:18:56 +02:00 |
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Celine Mercier
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baba2d742e
|
commenting _obidms.pyx
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2016-04-29 16:07:03 +02:00 |
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Celine Mercier
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5bd12079ae
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Added comments about listing columns and indexers in obidms functions
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2016-04-29 16:06:01 +02:00 |
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Celine Mercier
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072ee5ac03
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Re-re-fixed line breaks in README file
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2016-04-29 15:44:40 +02:00 |
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Celine Mercier
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9fe21316ff
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Refixed line breaks in README file
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2016-04-29 15:39:46 +02:00 |
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Celine Mercier
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3dc3aaa46b
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Fixed line breaks in README file
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2016-04-29 15:36:58 +02:00 |
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Celine Mercier
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b371030edd
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Adding README file
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2016-04-29 15:35:08 +02:00 |
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Celine Mercier
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b3976fa461
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Merge branch 'luke_tests'
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2016-04-28 11:17:24 +02:00 |
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Celine Mercier
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6ea2cfb9ca
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Merging luke_tests branch without the commit turning inline functions in macros
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2016-04-28 11:17:18 +02:00 |
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Celine Mercier
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0eca86107e
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Pseudo obihead for tests
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2016-04-27 14:27:28 +02:00 |
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Celine Mercier
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0de953a3ef
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pseudo obigrep for tests
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2016-04-27 14:19:55 +02:00 |
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Celine Mercier
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f3b20b809d
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Fixed bug with indexer names being defined and generating seg fault if
creating a column not using indexers
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2016-04-27 14:01:36 +02:00 |
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Celine Mercier
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d159b921eb
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Fixed obi import trying to print all lines at the end (source of
segfault?)
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2016-04-27 13:14:19 +02:00 |
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Celine Mercier
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4e4cf46b16
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Added all C files as source files for all cython files to stop having
that kind of problem with linux systems
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2016-04-27 10:44:24 +02:00 |
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Celine Mercier
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6b61533650
|
Added more C source files for _obiseq
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2016-04-27 10:41:00 +02:00 |
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Celine Mercier
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419885485b
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Added files in _obitaxo C sources for cython
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2016-04-27 10:30:16 +02:00 |
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Celine Mercier
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0c8504b6db
|
Commented #ifdef directive for detect_bucket_size function because it
causes errors
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2016-04-27 10:24:40 +02:00 |
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Celine Mercier celine.mercier@ujf-grenoble.fr
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654c34a1a6
|
changed inline functions to macros to make it work on Luke
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2016-04-26 15:40:12 +02:00 |
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Celine Mercier
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2d8c06f7b7
|
Fixed variable initialization for error detection
|
2016-04-26 14:38:46 +02:00 |
|
Celine Mercier
|
a6c8d35491
|
import command a bit modified for tests
|
2016-04-26 14:29:54 +02:00 |
|
Celine Mercier
|
366264828e
|
Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem
|
2016-04-26 14:29:17 +02:00 |
|
Celine Mercier
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d3a6ff6043
|
Removed deprecated code
|
2016-04-26 14:27:16 +02:00 |
|
Celine Mercier
|
5ca84b91dc
|
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2016-04-25 18:35:57 +02:00 |
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Celine Mercier
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87935c6678
|
Fixed all compilation problems with new function names, locations etc
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2016-04-25 18:35:02 +02:00 |
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Celine Mercier
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92980508c0
|
Made the function to clone a column in the context of a view private
|
2016-04-25 18:15:25 +02:00 |
|
Celine Mercier
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65880db422
|
Made function to update the line count of a view private
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2016-04-25 18:11:37 +02:00 |
|
Celine Mercier
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767d9c7804
|
Reordered view functions for better coherence
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2016-04-25 18:07:58 +02:00 |
|
Celine Mercier
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2566377e2a
|
Updated the documentation for utils functions
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2016-04-25 18:02:58 +02:00 |
|
Celine Mercier
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1fbbdd43f9
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Updated obiversion_t declaration
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2016-04-25 17:58:37 +02:00 |
|
Celine Mercier
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8cdfbb379e
|
Documentation for views and reworked the code a little
|
2016-04-25 17:58:12 +02:00 |
|
Celine Mercier
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0a55e26520
|
Reworked obiview code and added more comments
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2016-04-25 11:37:53 +02:00 |
|
Celine Mercier
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68a8509c12
|
Updated documentation in obitypes.h
|
2016-04-25 10:33:01 +02:00 |
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Celine Mercier
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5f98d2ed5c
|
Fixed the calculation of the size of data for OBI_STR and OBI_SEQ
columns
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2016-04-25 10:26:51 +02:00 |
|
|
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ef1be141c1
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Update Licence to english version
|
2016-04-23 18:03:50 +02:00 |
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|
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bbfd40d56d
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Add license
|
2016-04-23 18:03:10 +02:00 |
|
Celine Mercier
|
5d08da46a2
|
Updated the documentation in obidmscolumn.h
|
2016-04-22 17:55:53 +02:00 |
|
Celine Mercier
|
66045acf1d
|
Creating a column now uses the function to create the indexer name if
one was not provided
|
2016-04-22 17:47:00 +02:00 |
|
Celine Mercier
|
6977c4315c
|
Improved function to build an indexer name
|
2016-04-22 17:38:23 +02:00 |
|
Celine Mercier
|
839b3000a8
|
Added a function to build indexer names
|
2016-04-22 17:08:23 +02:00 |
|
Celine Mercier
|
ffa4557928
|
changed MAP_PRIVATE flags to MAP_SHARED when opening a column because it
seems a lot more efficient
|
2016-04-22 16:26:24 +02:00 |
|
Celine Mercier
|
003cd11362
|
Fixed initialization of NA values for OBI_STR and OBI_SEQ columns
|
2016-04-22 16:14:23 +02:00 |
|
Celine Mercier
|
c87227b65a
|
Uncommented an error message that doesn't need to be commented anymore
|
2016-04-22 16:11:56 +02:00 |
|
Celine Mercier
|
c07e75f2ac
|
Updated the documentation for OBI_STR columns
|
2016-04-22 15:59:32 +02:00 |
|
Celine Mercier
|
6b394a5cf7
|
Updated the documentation for OBI_SEQ columns
|
2016-04-22 15:58:20 +02:00 |
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