Commit Graph
14 Commits
Author SHA1 Message Date
Celine Mercier 837ff1a1ba Taxonomy: fixed an issue related to StopIteration behaviour in new
versions of python
2024-01-10 15:53:15 +13:00
Celine Mercier aeed42456a export: columns are now in alphabetical order when exporting to tab
format
2024-01-10 15:52:28 +13:00
Celine Mercier 8a1f844645 obi import: fixed bug caused by new behaviour of StopIteration
exceptions in Python>=3.7
2023-09-21 17:47:40 +12:00
Celine Mercier 791ccfb92e Fixed include bug in previous version and switch to version 3.0.1b24 2023-05-15 11:35:42 +12:00
Celine Mercier 1c9a906f5b ngsfilter and ecopcr: now check for primers too long for apat library to
handle (31bp max) and switch to version 3.0.1b23
2023-05-12 17:04:21 +12:00
Celine Mercier 55b2679b23 New command obi rm and switch to version 3.0.1b22 2023-05-08 17:48:50 +12:00
Celine Mercier 9ea2124adc Switch to version 3.0.1b21 2023-02-13 11:00:01 +13:00
Celine Mercier 2130a949c7 New command: obi taxonomy to add local taxa (closes #64) 2023-02-13 10:59:20 +13:00
Celine Mercier eeb93afa7d import: now automatically renames scientific_name tag to
`SCIENTIFIC_NAME`, and suggests using `--input-na-string` when a
sequence import fails
2023-02-13 10:40:38 +13:00
Celine Mercier 755ce179ad head: added output format options 2023-02-13 10:31:26 +13:00
Celine Mercier 7e492578b3 Switch to version 3.0.1b20 2022-09-21 11:33:03 +12:00
Celine Mercier 02e9df3ad1 alignpairedend and ngsfilter: ids of original sequences are now kept 2022-09-21 11:32:19 +12:00
Celine Mercier ce2833c04b switch to version v3.0.1b15 2022-02-25 17:48:44 +13:00
Celine Mercier f64b3da30b split command 2022-02-25 17:44:18 +13:00