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340579f6d7
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New version of LCS computation, with abug on alignment length patched patched
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2022-11-15 08:21:46 +01:00 |
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f3ddac0f50
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Small adjustment
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2022-10-27 11:18:44 +02:00 |
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8aa323dad5
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Add a first version of obitag the successor of ecotag
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2022-10-26 13:16:56 +02:00 |
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935fc31982
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Adds the new obicomplement command
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2022-10-05 09:40:09 +02:00 |
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bdf317819b
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Code refactoring
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2022-08-23 11:12:00 +02:00 |
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f1e3a68dc4
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improved performance
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2022-08-21 13:44:09 +02:00 |
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5dd835d3e7
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A first functional version of obiclean
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2022-08-20 18:01:07 +02:00 |
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f14860a486
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Patch header parting and formatiing
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2022-05-27 11:53:29 +03:00 |
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656eda1f73
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A fiirst version of LCS score function
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2022-03-07 16:37:21 +01:00 |
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011898bd9d
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A first version of obigrep. Normally fully functionnal, but not fully tested
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2022-02-25 07:29:52 +01:00 |
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abcf02e488
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Start to use leveled log
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2022-02-24 12:14:52 +01:00 |
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eaf65fbcce
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Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools
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2022-02-24 07:08:40 +01:00 |
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2e7c1834b0
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Big change iin the data model, and a first version of obiuniq
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2022-02-21 19:00:23 +01:00 |
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9737f97084
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before big changes
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2022-02-18 22:53:09 +01:00 |
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3586ecc483
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second version of obidistribute and a first buggy version of obiuniq
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2022-02-15 00:47:02 +01:00 |
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eb32620bb3
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Adds a first version of a new obidistribute command
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2022-02-14 00:01:01 +01:00 |
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38e4655f38
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Correct for a strange bug...
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2022-02-07 11:51:35 +01:00 |
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98a4363d22
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obimultiplex saves unassigned sequence
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2022-02-01 23:25:19 +01:00 |
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8dbda68746
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Adds the command obimultiplex
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2022-02-01 17:31:28 +01:00 |
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251d3be923
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Add automatic garbage collection on ApatPattern
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2022-01-24 17:26:30 +01:00 |
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4551df08b1
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Adds a reader for NGS filter files and change some API for the apat library
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2022-01-18 13:09:32 +01:00 |
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6571296bb2
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Add some documentation
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2022-01-16 19:53:39 +01:00 |
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64676db3f4
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Connect the command line options to the algorithm of obipairing
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2022-01-16 17:30:30 +01:00 |
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576a9f4d2d
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A global version of a Slice pool
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2022-01-16 00:21:42 +01:00 |
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e1b7e1761c
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Change the memory management for thee BuildAlignment function
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2022-01-15 19:10:16 +01:00 |
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e8fff6477b
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Work on iterators and recycling of biosequences
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2022-01-14 23:11:36 +01:00 |
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3848c54184
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Refactoring
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2022-01-14 15:16:41 +01:00 |
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bb63a424e9
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Remove an old test file out of interest
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2022-01-14 14:59:33 +01:00 |
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b9b9c0f179
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Patch module name from oa2 to obitools
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2022-01-13 23:43:01 +01:00 |
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f53bf1b804
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First commit
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2022-01-13 23:27:39 +01:00 |
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